Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/29efa13f06b520ea/score.json +52 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3c1666c8ad33cbb3/support.json +176 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/6c5b0ed82e79d31b/summary.json +755 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/716ac78bf6be391d/support.json +101 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/29efa13f06b520ea/score.json
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3c1666c8ad33cbb3/support.json
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{
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"schema": "pbisc.paper.strict-support.v1",
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"design": "disease_existing_draw",
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"unit": "draw3_n5",
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"N147_TOL",
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],
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"train_donor_ids": [
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],
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| 24 |
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| 37 |
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| 38 |
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| 39 |
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| 47 |
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| 48 |
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"test_donor_ids": [
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"excluded_sample_ids": [
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| 166 |
+
"sample_id": "N001_FU1",
|
| 167 |
+
"time_value": 1.0,
|
| 168 |
+
"time_raw": "FU1",
|
| 169 |
+
"time_field": "timepoint",
|
| 170 |
+
"group": "FU1"
|
| 171 |
+
}
|
| 172 |
+
]
|
| 173 |
+
}
|
| 174 |
+
],
|
| 175 |
+
"sha256": "2840746ddae5b92028a790a02b15c3ca61256bca7a0cf50f8bbd151aa4d9ea62"
|
| 176 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/6c5b0ed82e79d31b/summary.json
ADDED
|
@@ -0,0 +1,755 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "giroux2022",
|
| 4 |
+
"written_utc": "2026-10-15T06:52:25.110343+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"giroux2022",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/giroux_width_comparison_20261015/draw0/score",
|
| 11 |
+
"--arm",
|
| 12 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/giroux2022/disease/draw0/lora.npz",
|
| 13 |
+
"--condition",
|
| 14 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/giroux2022/disease/draw0/test_raw.npz",
|
| 15 |
+
"--donors",
|
| 16 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/giroux_width_comparison_20261015/draw0/test_samples.txt",
|
| 17 |
+
"--threads",
|
| 18 |
+
"2",
|
| 19 |
+
"--case-groups",
|
| 20 |
+
"severe",
|
| 21 |
+
"--control-groups",
|
| 22 |
+
"mild",
|
| 23 |
+
"--exclude-genes",
|
| 24 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/sex_linked_genes/sex_linked_genes_exclude.csv"
|
| 25 |
+
],
|
| 26 |
+
"arms": [
|
| 27 |
+
"lora"
|
| 28 |
+
],
|
| 29 |
+
"donors": [
|
| 30 |
+
"450905_d0",
|
| 31 |
+
"450905_d14",
|
| 32 |
+
"2AD75E_d0",
|
| 33 |
+
"2AD75E_d7",
|
| 34 |
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|
| 750 |
+
}
|
| 751 |
+
],
|
| 752 |
+
"applies_to": "group contrast (logFC r generated / broadcast / partial: dropped from each type's detected-gene set) and top-50 DEG (observed, generated and broadcast tests: columns dropped before log1p CPM, Welch and BH); all other metrics use every scoring gene"
|
| 753 |
+
},
|
| 754 |
+
"core_reused_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/giroux_width_comparison_20261015/draw0/score"
|
| 755 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/716ac78bf6be391d/support.json
ADDED
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| 1 |
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{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "immicro",
|
| 4 |
+
"design": "healthy_outerfold",
|
| 5 |
+
"unit": "fold2_n20",
|
| 6 |
+
"n_pairs": 20,
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| 7 |
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"train_sample_ids": [
|
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"HS34",
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"HS110",
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"HS101",
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"HS81",
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"HS18",
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"HS11",
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"HS85",
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"HS109"
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],
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"train_donor_ids": [
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"HS34",
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|
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|
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|
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|
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|
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|
| 48 |
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|
| 49 |
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|
| 50 |
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],
|
| 51 |
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"test_sample_ids": [
|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 58 |
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|
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|
| 60 |
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|
| 61 |
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|
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|
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|
| 71 |
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"HS108",
|
| 72 |
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"HS111"
|
| 73 |
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],
|
| 74 |
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"test_donor_ids": [
|
| 75 |
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"HS9",
|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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"HS50",
|
| 85 |
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|
| 86 |
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|
| 87 |
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"HS67",
|
| 88 |
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"HS71",
|
| 89 |
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"HS73",
|
| 90 |
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"HS80",
|
| 91 |
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"HS91",
|
| 92 |
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"HS102",
|
| 93 |
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"HS105",
|
| 94 |
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"HS108",
|
| 95 |
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"HS111"
|
| 96 |
+
],
|
| 97 |
+
"excluded_sample_ids": [],
|
| 98 |
+
"seed": 20261014,
|
| 99 |
+
"selection_audit": [],
|
| 100 |
+
"sha256": "9f6a9cc2d9c261a63f2c81229ca55961fdb44352ddc03c479e260dd238557168"
|
| 101 |
+
}
|