Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw0/cat.csv

@@ -0,0 +1,301 @@
+dataset,design,unit,arm,predictor,celltype,k,k_eff,cat_same_sign,cat_any_sign,chance_same_sign,chance_any_sign,G_both,pred_defined,n_tested_obs,n_tested_pred
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+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,Monocyte,100,100,0.11,0.11,0.008821453775582216,0.017642907551164433,5668,True,5668,5746
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,Monocyte,200,200,0.19,0.19,0.017642907551164433,0.035285815102328866,5668,True,5668,5746
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+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,NK cell,50,50,0.58,0.58,0.0045795933321121085,0.009159186664224217,5459,True,5459,5746
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+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,10,10,0.0,0.0,0.007668711656441718,0.015337423312883436,652,True,5020,654
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+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,50,50,0.14,0.18,0.03834355828220859,0.07668711656441718,652,True,5020,654
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,100,100,0.17,0.2,0.07668711656441718,0.15337423312883436,652,True,5020,654
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,200,200,0.145,0.185,0.15337423312883436,0.3067484662576687,652,True,5020,654
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,500,500,0.162,0.266,0.3834355828220859,0.7668711656441718,652,True,5020,654
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@ca5da7eb,DC,10,10,0.0,0.0,0.0010175010175010174,0.002035002035002035,4914,True,5020,5512
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@ca5da7eb,DC,20,20,0.0,0.0,0.002035002035002035,0.00407000407000407,4914,True,5020,5512
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@ca5da7eb,DC,50,50,0.02,0.02,0.005087505087505087,0.010175010175010175,4914,True,5020,5512
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+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@ca5da7eb,DC,500,500,0.09,0.118,0.05087505087505088,0.10175010175010175,4914,True,5020,5512

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw0/ceiling.csv

@@ -0,0 +1,51 @@
+dataset,design,unit,predictor,arm,celltype,n_genes,pearson_mean,pearson_sd,spearman_mean,spearman_sd,pearson_s20260926,spearman_s20260926,pearson_s20260927,spearman_s20260927,pearson_s20260928,spearman_s20260928,pearson_s20260929,spearman_s20260929,pearson_s20260930,spearman_s20260930,sb_reliability_pearson,noise_free_ceiling_pearson,sb_reliability_spearman,noise_free_ceiling_spearman,min_n_case_donors_A,min_n_control_donors_A,min_n_case_donors_B,min_n_control_donors_B,mean_n_cells_A,mean_n_cells_B,condition_sha256
+ji2025_chili,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,T cell,3038.0,0.9681355190906507,0.0026278586802247037,0.9425173788802631,0.0011746751385197803,0.9705029519790208,0.9438678478200138,0.9689567679262154,0.9435562104187821,0.970419049352477,0.9423417614759507,0.9646390466148007,0.9416707983208756,0.9661597795807397,0.9411502763656935,0.9838098136026365,0.991871873581783,0.9704081818033092,0.9850929812983692,14.0,11.0,14.0,11.0,22419.0,22432.0,
+ji2025_chili,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,B cell,3233.0,0.6862868812200237,0.006433825830795034,0.5317962560552185,0.007016458246817419,0.6814551259032444,0.5256530034635485,0.6849451373994501,0.5436610926600781,0.6853490823869668,0.5278442132925993,0.6822839067426038,0.5301290005623652,0.6974011536678536,0.5316939702975013,0.8139621897829119,0.9021985312462617,0.6943433292162953,0.8332726619878366,14.0,11.0,14.0,11.0,2205.0,2219.0,
+ji2025_chili,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,Monocyte,3193.0,0.945343508622782,0.0022104137354370256,0.8064010920653775,0.008471596872486107,0.9438555742730762,0.799124053657419,0.9431887341733199,0.8125375863654881,0.9472513948389816,0.8164529577496588,0.9481528106757399,0.807223410726692,0.9442690291527929,0.7966674518276301,0.9719039382325273,0.9858518845305958,0.8928261786460348,0.9448947976605834,14.0,11.0,14.0,11.0,11417.0,11430.0,
+ji2025_chili,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,NK cell,3059.0,0.8554223414195331,0.0081299137035208,0.705247646639896,0.0071197261292182635,0.8580593078719545,0.6990159264553506,0.8615195820964576,0.713975908828959,0.8630056947483422,0.7102389499665003,0.8434156127759816,0.7056749396587151,0.851111509604929,0.6973325082899559,0.9220783024150424,0.9602490835273119,0.8271498254573765,0.9094777762306105,14.0,11.0,14.0,11.0,7106.0,7113.0,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,T cell,3038.0,0.20658068927550738,0.0021388980670207346,0.20339920225874458,0.002877825907147333,0.2091565342543135,0.20312306483149373,0.20490402234875266,0.19916356271447552,0.2075983017289192,0.20347117114220198,0.2038930207071818,0.20723921526980402,0.20735156733836962,0.20399899733574764,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,B cell,3233.0,-0.048650464515670636,0.005775211671565399,-0.03374229929858591,0.00851583761226018,-0.04333694475279289,-0.018925174787064715,-0.0496758570181471,-0.040608066751939786,-0.04297098940195328,-0.03515963653506283,-0.050303021848003095,-0.03687427757784118,-0.05696550955745682,-0.03714434084102102,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,Monocyte,3193.0,0.22452591958822982,0.0028558823266131277,0.1864051954137251,0.005727389783249315,0.227091342165402,0.19362066139982548,0.22404606886318282,0.18299167995919627,0.21990116429920042,0.17973126014621332,0.2265702751382855,0.19090968722324003,0.22502074747507847,0.18477268834015045,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,NK cell,3059.0,0.026395841503876766,0.004875569302093599,0.004669145820404136,0.00947336306720747,0.019777318173290957,-0.00847433833954701,0.027129420025658376,-4.402268824392397e-05,0.023292177012815735,0.005255145984208654,0.031486566184935415,0.01600004091778201,0.030293726122683363,0.010608903227820949,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,T cell,3038.0,0.3537949240739279,0.005675320593955708,0.41876993338235485,0.0020679228855972876,0.35731558867207486,0.4195484803442604,0.3460157980938736,0.4156808967476324,0.35323608431070663,0.41883377170407227,0.36089461281027446,0.4213814023746823,0.3515125364827097,0.4184051157411271,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,B cell,3233.0,0.04504283808155933,0.009056201614543784,0.0721116066993754,0.011698086706646033,0.057044089261837856,0.08276620021624688,0.03484324427039298,0.06411721551678386,0.03825200144012639,0.06466421201190524,0.050811262604502826,0.08681430487511319,0.04426359283093662,0.062196100876827795,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,Monocyte,3193.0,0.24824362903630215,0.006632716233579388,0.15936702631630364,0.00810105236908987,0.24815164579954746,0.16798535797110292,0.2552736489798646,0.1629248517060277,0.24722631278474144,0.15598086331195873,0.2526310460068434,0.16289277226723317,0.23793549161051383,0.14705128632519568,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,NK cell,3059.0,0.07699134735956134,0.0069169915996535,0.05778354788463467,0.009370158327813679,0.08070917014362322,0.06256074618847475,0.06987473629741033,0.047845133461263276,0.07535736941302384,0.05692819360242232,0.08697688303523303,0.07105766409961896,0.07203857790851624,0.050526002071394,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_cal,zs_cal,T cell,3038.0,0.20991561449746507,0.0024251789266227235,0.20172129186384574,0.004023090426214098,0.21117582175037755,0.19938142693730398,0.20719936129922512,0.1984158418599837,0.20863653559708129,0.1997380564077576,0.20914036092809488,0.20276885010973503,0.2134259929125465,0.20830228400444845,,,,,,,,,,,
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+ji2025_chili,fewshot,fewshot_n5/draw0,generated:lora5,lora5,B cell,3233.0,0.2238761500865319,0.010661212064355453,0.22387470546346364,0.009985215686697212,0.21371553626251025,0.21544603113872002,0.21652095698967425,0.21675861114747438,0.23550967630623795,0.23359029421149144,0.2353222679950955,0.2358929882380383,0.2183123128791415,0.21768560258159403,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:lora5,lora5,Monocyte,3193.0,0.4807043845236884,0.005118512608321915,0.3680538483574905,0.00522119916161278,0.4762614421636394,0.3712713735701815,0.48580223332996025,0.36807553116590264,0.4860665683372846,0.36268345274391395,0.4752246875194823,0.36330658507742875,0.48016699126807544,0.3749322992300254,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:lora5,lora5,NK cell,3059.0,0.3281143816888013,0.008395768011237918,0.29838544025726377,0.010489752738552925,0.32171946769187293,0.28526200640336413,0.3290716879460146,0.30301203608309213,0.3346796885033342,0.31319649316390324,0.3374602550416973,0.29712672714490707,0.31764080926108734,0.293329938491052,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,T cell,3038.0,0.11908469987795309,0.0075788703754716465,0.07833988567080995,0.0031760760451614287,0.12038964861983974,0.07710625933524184,0.12642734549854262,0.07904776257657736,0.12590357916768016,0.08322892153515248,0.10934687452059687,0.07772430544577642,0.11335605158310602,0.07459217946130163,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,B cell,3233.0,-0.08585778710880472,0.0072369512618888935,-0.062231851000432034,0.0038625053865845196,-0.0883909461253147,-0.06816212548066541,-0.08850836928235353,-0.05799346777435811,-0.07858539271985,-0.06168250323834554,-0.07850620942208339,-0.06333229362656823,-0.09529801799442195,-0.05998886488222294,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,Monocyte,3193.0,0.10018056952193719,0.0046069969141268935,0.051355845279099435,0.004707348144018554,0.09967034344131198,0.04831166969967121,0.09405748201807142,0.04761667041554631,0.09803865219733533,0.0480009172124435,0.10314428145897035,0.05525447509879096,0.10599208849399683,0.057595493969045154,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,NK cell,3059.0,0.041429309439172245,0.008857393657789005,0.06870431754362959,0.003009700146287205,0.043807128904671325,0.0735123984302419,0.041211565455768234,0.06915640896201547,0.027148980109409127,0.06605100045299549,0.043569349032926745,0.06628886188336605,0.05140952369308578,0.06851291798952902,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:all_usable_raw.npz@78d8ac58,,T cell,3038.0,0.21076837910424656,0.0016061126741144763,0.14440096778161654,0.0019492139663781964,0.21046365172237425,0.14459508259465653,0.21032986666057432,0.14115418307331104,0.21207225513965658,0.1462297962037018,0.2084661818545992,0.1445005695399313,0.2125099401440284,0.14552520749648212,,,,,,,,,,,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:all_usable_raw.npz@78d8ac58,,B cell,3233.0,0.09253836429742103,0.009371225227389741,0.04255449502948838,0.006165645045835789,0.10333795905977494,0.03881828035095752,0.08339271527546412,0.04534772584777681,0.08296385857629397,0.042539306681355325,0.10023806342569465,0.05109087593777388,0.09275922514987749,0.034976286329578374,,,,,,,,,,,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:all_usable_raw.npz@78d8ac58,,Monocyte,3193.0,0.3714670533618732,0.0012493930030081867,0.2386321627274564,0.00609092522062262,0.37076243116420377,0.24194526894184137,0.372666072468536,0.24189130761685898,0.371444545417481,0.22783823080965343,0.37267989216896674,0.23991278590955453,0.3697823255901785,0.24157322035937365,,,,,,,,,,,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86
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+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@49033eab,,T cell,3038.0,0.7245034302587735,0.007625016964427457,0.7018123908379792,0.003958261837599611,0.7253870681016226,0.7028662018295267,0.7318628330877899,0.6951664412214577,0.731866210480142,0.7015236836305189,0.7157948284932864,0.704844075697724,0.7176062111310267,0.7046615518106684,,,,,,,,,,,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@49033eab,,B cell,3233.0,0.4038309050346173,0.020897644596218717,0.33138201519230936,0.018705333459880267,0.41760973505763016,0.337889028831363,0.37665443442695395,0.3202195713915433,0.4190855885089877,0.34191915454572785,0.41999038837581787,0.3519389058501601,0.385814378803697,0.3049434153427526,,,,,,,,,,,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@49033eab,,Monocyte,3193.0,0.6617804865826079,0.012141970549110892,0.4892649493197762,0.016018609559620322,0.6697634677511256,0.5036606675081505,0.6478413392903069,0.4853759392524519,0.6599395408957547,0.4849652919784845,0.6534746288933939,0.46658757001085965,0.6778834560824584,0.5057352778489342,,,,,,,,,,,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@49033eab,,NK cell,3059.0,0.7176204672000444,0.0071749456118405715,0.6198286071780476,0.008688133915078857,0.715170070135061,0.6117032849989734,0.7094520832700365,0.6098265674590615,0.7247099260962777,0.6299896015205744,0.7131922310418308,0.6231425702868068,0.7255780254570161,0.624481011624822,,,,,,,,,,,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@7141bb69,,T cell,3038.0,0.09782018395396071,0.0032640840276801216,0.03464761549033086,0.0023332823486960663,0.09530518695111195,0.035287872938759665,0.09438649784530699,0.030855358408977587,0.10251536032716947,0.0372616344455814,0.09753281282531896,0.0348538523415375,0.09936106182089617,0.034979359316798166,,,,,,,,,,,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@7141bb69,,B cell,3233.0,0.008945287838791102,0.006897735615903565,-0.02704278604245448,0.006127759824902191,0.015498626570991268,-0.031135091663169974,0.0032600399618205565,-0.0205660850476626,-7.156577112116745e-05,-0.03363797630168512,0.013540206586272967,-0.020513520977559062,0.012499131845991883,-0.02936125622219566,,,,,,,,,,,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@7141bb69,,Monocyte,3193.0,0.3002195590979376,0.0015503499722720534,0.2122770859302594,0.006143852032597372,0.2982798978281666,0.21036725844885878,0.30023762345167665,0.2179572346914349,0.29918354745556314,0.20244404059914733,0.30214818760295287,0.21524118618754767,0.301248539151329,0.21537570972430822,,,,,,,,,,,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@7141bb69,,NK cell,3059.0,0.05497975476246134,0.003033150423512219,-0.004149248091865523,0.007049156453765831,0.055744572275509885,-0.0033876733848519063,0.05929261215094306,0.007485950425788336,0.053626077300587306,-0.005632260002099456,0.05101444910486909,-0.008881501631528845,0.055221062980397355,-0.010330755866635746,,,,,,,,,,,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@ca5da7eb,,T cell,3038.0,0.21076837910424656,0.0016061126741144763,0.14440096778161654,0.0019492139663781964,0.21046365172237425,0.14459508259465653,0.21032986666057432,0.14115418307331104,0.21207225513965658,0.1462297962037018,0.2084661818545992,0.1445005695399313,0.2125099401440284,0.14552520749648212,,,,,,,,,,,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@ca5da7eb,,B cell,3233.0,0.09253836429742103,0.009371225227389741,0.04255449502948838,0.006165645045835789,0.10333795905977494,0.03881828035095752,0.08339271527546412,0.04534772584777681,0.08296385857629397,0.042539306681355325,0.10023806342569465,0.05109087593777388,0.09275922514987749,0.034976286329578374,,,,,,,,,,,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@ca5da7eb,,Monocyte,3193.0,0.3714670533618732,0.0012493930030081867,0.2386321627274564,0.00609092522062262,0.37076243116420377,0.24194526894184137,0.372666072468536,0.24189130761685898,0.371444545417481,0.22783823080965343,0.37267989216896674,0.23991278590955453,0.3697823255901785,0.24157322035937365,,,,,,,,,,,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@ca5da7eb,,NK cell,3059.0,0.1616853151045657,0.0036169578320649214,0.08442983970019473,0.003015083266108359,0.15809344008855392,0.08574740421536005,0.16400712912450388,0.08886057136820821,0.15749319734937078,0.0840759352610128,0.16529549484332723,0.08213299963543699,0.16353731411707279,0.08133228802095559,,,,,,,,,,,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9
+ji2025_chili,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,mean4,,0.8637970625882474,0.002573154905189082,0.7464905934101889,0.004987927230713891,0.863468240006824,0.7419152078490829,0.8646525553988608,0.7534326995683268,0.8665063053316919,0.7492194706211772,0.8596228442022815,0.746174537317162,0.8647353680015788,0.7417110516951952,0.9229385610082795,0.960042843221488,0.846181878780754,0.9181845542943499,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,mean4,,0.10221299646298583,0.000785789524632607,0.09018281104857198,0.0034800919345975723,0.1031720624600534,0.09233605327617687,0.10160091355486169,0.08537578830837202,0.10195516340974552,0.08832448518439029,0.1029117100455999,0.09431866645824621,0.10142513284466866,0.0905590620156745,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,mean4,,0.18101818463783767,0.0054065968655917064,0.17700802857066716,0.006972717011475351,0.18580512346927086,0.18321519618002124,0.1765018569103854,0.1726420243579268,0.17851794198714957,0.17410176015758963,0.18782845111421342,0.18553653590416191,0.1764375497081691,0.16954462625363614,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:zs_cal,zs_cal,mean4,,0.11227560100789438,0.0025574760007361958,0.1020479014218851,0.005722271645145587,0.11265953094785712,0.10591238469089559,0.1123157308258594,0.09863260061076176,0.11360336069539247,0.10020141702634522,0.10802950287028194,0.09567572041770539,0.11476987970008094,0.10981738436371759,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:lora5,lora5,mean4,,0.37828525709076277,0.004210386348860138,0.3416239900752721,0.0031895301684693495,0.37333013063031284,0.33711380932311125,0.3784332295836901,0.3414904715149249,0.38356840719833174,0.3460854573846764,0.3810729223783508,0.34216873497516737,0.3750215956631285,0.3412614771784808,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,mean4,,0.04370919793256445,0.0005051833859085199,0.03404204937327672,0.0009094592798309831,0.043869043710127086,0.032692050496122387,0.04329700592250718,0.034456843544945256,0.04312645468864366,0.03389958399056148,0.044388573897602646,0.0339838372003413,0.04386491144394167,0.03517793163441321,,,,,,,,,,,
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:all_usable_raw.npz@78d8ac58,,mean4,,0.2091147779670266,0.00230508939596173,0.127504366309689,0.0019462930495695197,0.21066437050872672,0.12777650902570387,0.20759894588226957,0.12931344697653877,0.20599346412070058,0.12517081723893084,0.21166990807314695,0.12940930775567416,0.2096472012502893,0.12585175055159742,,,,,,,,,,,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@49033eab,,mean4,,0.6269338222690107,0.006812976022931234,0.5355719906320281,0.004808226406123967,0.6319825852613599,0.5390297957920034,0.6164526725187718,0.5276471298311286,0.6339003164952906,0.5395994329188264,0.6256130192010823,0.5366282804613876,0.6267205178685495,0.5349553141567943,,,,,,,,,,,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@7141bb69,,mean4,,0.11549119641328769,0.0013797493367858087,0.053933166821567555,0.0033202388823362727,0.11620707090644493,0.05278309158489914,0.11429419335243682,0.05893311461963456,0.11381335482804969,0.05010885968523604,0.11605891402985347,0.05517500397999932,0.1170824489496536,0.05266576423806875,,,,,,,,,,,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013
+ji2025_chili,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@ca5da7eb,,mean4,,0.2091147779670266,0.00230508939596173,0.127504366309689,0.0019462930495695197,0.21066437050872672,0.12777650902570387,0.20759894588226957,0.12931344697653877,0.20599346412070058,0.12517081723893084,0.21166990807314695,0.12940930775567416,0.2096472012502893,0.12585175055159742,,,,,,,,,,,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw0/contrast.csv

@@ -0,0 +1,51 @@
+dataset,design,unit,arm,celltype,statistic,label,n_genes,pearson_r_generated,spearman_r_generated,pearson_r_broadcast,spearman_r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,condition,condition_sha256,pearson_r_generated_scorer,pearson_r_broadcast_scorer,partial_r_generated_given_broadcast_scorer,r_generated_vs_broadcast_scorer
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,T cell,mean_cp10k,"Zero-shot, real bulk",3038.0,0.20700606425622473,0.2049386289797899,0.21197028589936057,0.14305782864545782,0.1646554816321611,0.23954928611121157,all_usable_raw.npz@78d8ac58,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86,0.2070060642562247,0.2119702858993605,0.1646554816321611,0.2395492861112115
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,T cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3038.0,0.13094576678274783,0.13844799584969986,0.3111080127833571,0.23952768638399813,0.09682818330248465,0.12752503568721718,all_usable_raw.npz@78d8ac58,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86,0.1309457667827478,0.3111080127833571,0.0968281833024846,0.1275250356872171
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,B cell,mean_cp10k,"Zero-shot, real bulk",3233.0,-0.05510057787240307,-0.04087753500666296,0.10073938447302222,0.039331745181908656,-0.06750741262567168,0.11530209622120272,all_usable_raw.npz@78d8ac58,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86,-0.055100577872403,0.1007393844730222,-0.0675074126256716,0.1153020962212027
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,B cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3233.0,-0.0859704026801497,-0.08816406431483587,0.012072638770403557,-0.004506376964274817,-0.08695189113897092,0.06536971370680648,all_usable_raw.npz@78d8ac58,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86,-0.0859704026801497,0.0120726387704035,-0.0869518911389709,0.0653697137068064
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,Monocyte,mean_cp10k,"Zero-shot, real bulk",3193.0,0.23039539837612108,0.19633671340053127,0.3732268158395985,0.243948638909352,0.14384691747221268,0.27336156934083833,all_usable_raw.npz@78d8ac58,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86,0.230395398376121,0.3732268158395985,0.1438469174722126,0.2733615693408383
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3193.0,0.14476854370162556,0.16734563155361992,0.3506580485024196,0.25691455917599937,0.10502625876678454,0.13491889021432513,all_usable_raw.npz@78d8ac58,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86,0.1447685437016255,0.3506580485024196,0.1050262587667845,0.1349188902143251
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,NK cell,mean_cp10k,"Zero-shot, real bulk",3059.0,0.02777589401485785,0.0019327288713732016,0.1665379702415652,0.0872560765080752,0.001789373026551742,0.15631990692018563,all_usable_raw.npz@78d8ac58,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86,0.0277758940148578,0.1665379702415652,0.0017893730265517,0.1563199069201856
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,NK cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3059.0,0.023501953375936337,0.019659024458045255,0.15048321474174686,0.0848543558548311,0.011190870484937719,0.0829103065754566,all_usable_raw.npz@78d8ac58,78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86,0.0235019533759363,0.1504832147417468,0.0111908704849377,0.0829103065754566
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,T cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3038.0,0.3575246076034932,0.42442941883970337,0.7329627431284503,0.7095707310672154,0.04790927284222332,0.4480274725543216,all_usable_pseudo.npz@49033eab,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9,0.3575246076034932,0.7329627431284503,0.0479092728422233,0.4480274725543216
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,T cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3038.0,0.355241725633106,0.35747927549450825,0.8279850678350604,0.801625914370199,0.11973973554745257,0.35317621092511864,all_usable_pseudo.npz@49033eab,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9,0.355241725633106,0.8279850678350604,0.1197397355474525,0.3531762109251186
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,B cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3233.0,0.051986389734052015,0.08484969730039403,0.4385862165859495,0.37113382088507113,-0.012346183937400921,0.14356773157059755,all_usable_pseudo.npz@49033eab,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9,0.051986389734052,0.4385862165859495,-0.0123461839374009,0.1435677315705975
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,B cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3233.0,0.001662134178638466,-0.0040798398878394235,0.312886774081883,0.23622484895522383,-0.01772882966224162,0.05903553577241273,all_usable_pseudo.npz@49033eab,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9,0.0016621341786384,0.312886774081883,-0.0177288296622416,0.0590355357724127
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,Monocyte,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3193.0,0.25021145446052584,0.1625013651086641,0.6750072458954721,0.5134719136584969,0.16751708112995764,0.19094547428466627,all_usable_pseudo.npz@49033eab,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9,0.2502114544605258,0.6750072458954721,0.1675170811299576,0.1909454742846662
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3193.0,0.1648576342157127,0.12780482324999848,0.7377389223336729,0.6088647923552138,0.009022491580737058,0.21540093860168225,all_usable_pseudo.npz@49033eab,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9,0.1648576342157127,0.7377389223336729,0.009022491580737,0.2154009386016822
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,NK cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3059.0,0.07641858789806454,0.05700790547454823,0.7466234747848354,0.6624719182301707,-0.04347939519523527,0.1407072768143403,all_usable_pseudo.npz@49033eab,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9,0.0764185878980645,0.7466234747848354,-0.0434793951952352,0.1407072768143403
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,NK cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3059.0,0.08851491062843564,0.03615621675923113,0.6255816181093404,0.544077656535059,0.01234789761022153,0.1262163536284401,all_usable_pseudo.npz@49033eab,49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9,0.0885149106284356,0.6255816181093404,0.0123478976102215,0.1262163536284401
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,T cell,mean_cp10k,Zero-shot + calibration,3038.0,0.21103582252470668,0.20377239966105848,0.09909972178618053,0.03244262076221721,0.20447628437945822,0.08352201316366294,test_cal.npz@7141bb69,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013,0.2110358225247066,0.0990997217861805,0.2044762843794582,0.0835220131636629
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,T cell,pseudobulk_log1p_cpm,Zero-shot + calibration,3038.0,0.1349921305082588,0.11757973466161117,0.30074220449721156,0.2366361958316666,0.11250923458199692,0.09364489906226658,test_cal.npz@7141bb69,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013,0.1349921305082588,0.3007422044972115,0.1125092345819969,0.0936448990622665
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,B cell,mean_cp10k,Zero-shot + calibration,3233.0,-0.02676403045941734,-0.04978386183724757,0.007584151568926337,-0.039795813178200114,-0.02696119197314011,0.02480084890209615,test_cal.npz@7141bb69,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013,-0.0267640304594173,0.0075841515689263,-0.0269611919731401,0.0248008489020961
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,B cell,pseudobulk_log1p_cpm,Zero-shot + calibration,3233.0,-0.0172168995816496,-0.026507013986214408,0.01553220956943414,-0.006955382556472883,-0.018412666137987598,0.07362621140549021,test_cal.npz@7141bb69,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013,-0.0172168995816496,0.0155322095694341,-0.0184126661379875,0.0736262114054902
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,Monocyte,mean_cp10k,Zero-shot + calibration,3193.0,0.17439529107829402,0.13547615005002,0.302367707418219,0.21788630925336966,0.15178208598608295,0.10071706075901017,test_cal.npz@7141bb69,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013,0.174395291078294,0.302367707418219,0.1517820859860829,0.1007170607590101
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,Monocyte,pseudobulk_log1p_cpm,Zero-shot + calibration,3193.0,0.10539388029752192,0.10793759205208692,0.33755946147136023,0.2573555844615516,0.08252566102700547,0.08288743470877712,test_cal.npz@7141bb69,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013,0.1053938802975219,0.3375594614713602,0.0825256610270054,0.0828874347087771
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,NK cell,mean_cp10k,Zero-shot + calibration,3059.0,0.09559613039876416,0.12377202941382705,0.05659125515418479,-0.006639810991915235,0.09398718362085114,0.03193849960343947,test_cal.npz@7141bb69,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013,0.0955961303987641,0.0565912551541847,0.0939871836208511,0.0319384996034394
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,NK cell,pseudobulk_log1p_cpm,Zero-shot + calibration,3059.0,0.065471531496518,0.06504503179386069,0.149663006024268,0.08239904515223978,0.06561537244209585,0.0039802394189988296,test_cal.npz@7141bb69,7141bb69609b7484cd7d34e903cc1de953f5b33dd0dc5389b9ecfc4c9c9e4013,0.065471531496518,0.149663006024268,0.0656153724420958,0.0039802394189988
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,T cell,mean_cp10k,"LoRA, 5 donors",3038.0,0.48400240471897965,0.4835090297153083,0.21197028589936057,0.14305782864545782,0.4667218250748127,0.15889520607539945,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.4840024047189796,0.2119702858993605,0.4667218250748127,0.1588952060753994
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,T cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",3038.0,0.14228265604623228,0.14089720772874673,0.3111080127833571,0.23952768638399813,0.13183123856568463,0.05523768962475472,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.1422826560462322,0.3111080127833571,0.1318312385656846,0.0552376896247547
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,B cell,mean_cp10k,"LoRA, 5 donors",3233.0,0.2430463928505339,0.255283479978312,0.10073938447302222,0.039331745181908656,0.23581636808135392,0.09398718390766352,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.2430463928505339,0.1007393844730222,0.2358163680813539,0.0939871839076635
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,B cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",3233.0,0.05489432785796095,0.057357525860574896,0.012072638770403557,-0.004506376964274817,0.054436355713236184,0.04229858193153189,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.0548943278579609,0.0120726387704035,0.0544363557132361,0.0422985819315318
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,Monocyte,mean_cp10k,"LoRA, 5 donors",3193.0,0.484824585125675,0.38052631026734,0.3732268158395985,0.243948638909352,0.44396110216521617,0.22330927548496296,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.484824585125675,0.3732268158395985,0.4439611021652161,0.2233092754849629
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,Monocyte,pseudobulk_log1p_cpm,"LoRA, 5 donors",3193.0,0.37933898433845087,0.34631636104085156,0.3506580485024196,0.25691455917599937,0.34876836846030407,0.16275443714545934,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.3793389843384508,0.3506580485024196,0.348768368460304,0.1627544371454593
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,NK cell,mean_cp10k,"LoRA, 5 donors",3059.0,0.3360460463808009,0.31543803416223576,0.1665379702415652,0.0872560765080752,0.3170568289398621,0.16695902301814625,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.3360460463808009,0.1665379702415652,0.3170568289398621,0.1669590230181462
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,NK cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",3059.0,0.08217013148288332,0.11238927898554123,0.15048321474174686,0.0848543558548311,0.07916487718515988,0.02613899797694177,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.0821701314828833,0.1504832147417468,0.0791648771851598,0.0261389979769417
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,T cell,mean_cp10k,"scSemiProfiler, 5 donors",3038.0,0.12071862682604313,0.07636053587153238,0.21197028589936057,0.14305782864545782,0.046332322511921674,0.37115290639135995,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.1207186268260431,0.2119702858993605,0.0463323225119216,0.3711529063913599
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,T cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3038.0,0.1258078512669937,0.06860546808994801,0.3111080127833571,0.23952768638399813,0.03852524777451896,0.2918218616120582,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.1258078512669937,0.3111080127833571,0.0385252477745189,0.2918218616120582
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,B cell,mean_cp10k,"scSemiProfiler, 5 donors",3233.0,-0.08782246146086153,-0.0653280282608282,0.10073938447302222,0.039331745181908656,-0.11228066488184886,0.21192855365730812,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,-0.0878224614608615,0.1007393844730222,-0.1122806648818488,0.2119285536573081
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,B cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3233.0,-0.07099484995030764,-0.045975845817385834,0.012072638770403557,-0.004506376964274817,-0.07496758218647784,0.20139260278809937,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,-0.0709948499503076,0.0120726387704035,-0.0749675821864778,0.2013926027880993
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,Monocyte,mean_cp10k,"scSemiProfiler, 5 donors",3193.0,0.0986237931800939,0.049704105250876825,0.3732268158395985,0.243948638909352,-0.01118738135543224,0.2908528139457831,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.0986237931800939,0.3732268158395985,-0.0111873813554322,0.2908528139457831
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,Monocyte,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3193.0,0.1285980415344258,0.07784881456561336,0.3506580485024196,0.25691455917599937,0.06281523688389672,0.20244637805674737,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.1285980415344258,0.3506580485024196,0.0628152368838967,0.2024463780567473
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,NK cell,mean_cp10k,"scSemiProfiler, 5 donors",3059.0,0.0410919656508414,0.07286437626389877,0.1665379702415652,0.0872560765080752,-0.011252495239542817,0.3100820076669728,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.0410919656508414,0.1665379702415652,-0.0112524952395428,0.3100820076669728
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,NK cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3059.0,0.04905875790565527,0.04425258282453337,0.15048321474174686,0.0848543558548311,0.01372140863740505,0.2384647355703685,test_raw.npz@ca5da7eb,ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9,0.0490587579056552,0.1504832147417468,0.013721408637405,0.2384647355703685
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,mean4,mean_cp10k,"Zero-shot, real bulk",,0.10251919469370015,0.09058263406125786,0.21311861411338662,0.12839857231119842,0.06069608987631346,0.19613321464835956,,,0.10251919469370013,0.21311861411338662,0.06069608987631345,0.1961332146483595
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,mean4,pseudobulk_log1p_cpm,"Zero-shot, real bulk",,0.05331146529504,0.059322146886632295,0.2060804786994818,0.14419755611263846,0.03152335535380899,0.10268098654595136,,,0.05331146529503998,0.20608047869948176,0.03152335535380898,0.10268098654595131
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,mean4,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",,0.1840352599240339,0.18219709668082743,0.6482949200986768,0.5641620959602385,0.03990019370988619,0.23081198880598142,,,0.18403525992403386,0.6482949200986768,0.039900193709886206,0.23081198880598142
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,mean4,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",,0.1525691011639732,0.1293401189039746,0.6260480955899892,0.5476983030539239,0.030845323769042386,0.18845725973191343,,,0.15256910116397318,0.6260480955899892,0.030845323769042348,0.18845725973191338
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,mean4,mean_cp10k,Zero-shot + calibration,,0.11356580338558689,0.1033091793219145,0.11641070898187766,0.05097332646136788,0.10582109050331304,0.06024460560705218,,,0.11356580338558686,0.11641070898187764,0.10582109050331304,0.060244605607052124
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_cal,mean4,pseudobulk_log1p_cpm,Zero-shot + calibration,,0.07216016068016229,0.0660138361303361,0.2008742203905685,0.1423588607222463,0.06055940047827767,0.06353469614888319,,,0.07216016068016229,0.20087422039056843,0.06055940047827765,0.06353469614888314
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,mean4,mean_cp10k,"LoRA, 5 donors",,0.38697985726899736,0.358689213530799,0.21311861411338662,0.12839857231119842,0.36588903106531123,0.16078767212154305,,,0.3869798572689973,0.21311861411338662,0.36588903106531123,0.160787672121543
+ji2025_chili,fewshot,fewshot_n5/draw0,lora5,mean4,pseudobulk_log1p_cpm,"LoRA, 5 donors",,0.16467152493138185,0.1642400934039286,0.2060804786994818,0.14419755611263846,0.1535502099810962,0.07160742666967193,,,0.16467152493138182,0.20608047869948176,0.15355020998109614,0.07160742666967188
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,mean4,mean_cp10k,"scSemiProfiler, 5 donors",,0.04315298104902922,0.03340024728136994,0.21311861411338662,0.12839857231119842,-0.02209705474122556,0.296004070415356,,,0.04315298104902922,0.21311861411338662,-0.02209705474122555,0.296004070415356
+ji2025_chili,fewshot,fewshot_n5/draw0,scsemi5,mean4,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",,0.05811745018919179,0.036182754915677226,0.2060804786994818,0.14419755611263846,0.010023577777335722,0.23353139450681837,,,0.05811745018919178,0.20608047869948176,0.010023577777335702,0.23353139450681834

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw0/deg_limma.csv

@@ -0,0 +1,76 @@
+dataset,design,unit,arm,celltype,method,deg_scored,pred_defined,overlap,overlap_scorer,obs_list_size,gen_list_size,n_sig_obs,n_sig_gen,n_tested_obs,n_tested_gen,G_both,chance_overlap,broadcast_overlap,broadcast_overlap_scorer,broadcast_list_size,n_sig_broadcast,n_tested_broadcast,G_both_broadcast,broadcast_chance_overlap,condition
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,T cell,welch,True,True,0,0.0,50,0,1831,0,5660,4226,4211,0.0,0,0.0,4,4,5512,5442,0.036751194413818446,all_usable_raw.npz@78d8ac58
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,B cell,welch,True,True,0,0.0,9,3,9,3,5271,3134,3117,0.008662175168431183,0,0.0,4,4,5512,5119,0.007032623559288923,all_usable_raw.npz@78d8ac58
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,Monocyte,welch,True,True,0,0.0,10,0,10,0,5668,4261,4254,0.0,0,0.0,4,4,5512,5453,0.007335411699981661,all_usable_raw.npz@78d8ac58
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,NK cell,welch,True,True,0,0.0,50,0,358,0,5459,2837,2835,0.0,0,0.0,4,4,5512,5277,0.0379003221527383,all_usable_raw.npz@78d8ac58
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_raw,DC,welch,True,True,0,0.0,6,0,6,0,5020,2134,2133,0.0,0,0.0,4,4,5512,4914,0.004884004884004884,all_usable_raw.npz@78d8ac58
+ji2025_chili,fewshot,fewshot_n5/draw0,zs_pseudo,T cell,welch,True,True,0,0.0,50,3,1831,3,5660,4217,4215,0.03558718861209965,12,12.0,50,858,5746,5660,0.4416961130742049,all_usable_pseudo.npz@49033eab
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