Add verified PBISC dataset assets (1301-1346)
Browse files- source/metadata/obs_sc.parquet/304_A_Parse_10M_PBMC_12donor_90cytokines__part_004__e834d913e8f5.parquet +3 -0
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- source/metadata/var.parquet +3 -0
- source/source_audit_prebuild.json +0 -0
- topup/manifest.json +149 -0
- topup/shard_offsets.csv +0 -0
- topup/summary.json +119 -0
- topup/topup_cell_ids.npy +3 -0
- topup/topup_recipes.csv +0 -0
- topup/topup_sample_coverage.csv +0 -0
- topup/topup_slot_coverage.csv +17 -0
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|
| 1 |
+
{
|
| 2 |
+
"annotation_fields_read": [],
|
| 3 |
+
"cell_identity": "topup_cell_ids.npy stores global source IDs; shard_offsets.csv maps to shard_id,row_index",
|
| 4 |
+
"coverage_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/full_recipe_allcells_6k_broad_20260909/coverage_v1",
|
| 5 |
+
"coverage_pool_order_sha256": "b44aed91ab628de4fc7505c9ecc13296bc04d8cd78120d46aca3e50ae0267b3f",
|
| 6 |
+
"elapsed_seconds": 0.866,
|
| 7 |
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"max_k": 4000,
|
| 8 |
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"original_recipe_membership_sha256": "b28cef371a2ff5c42b77ec13a0a34cc239ff57ae8127f9e3a4ea81ee945e7fce",
|
| 9 |
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"original_target_exposures": 193644000,
|
| 10 |
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"original_train_recipes": 131072,
|
| 11 |
+
"policy": "unseen-train-explicit-sample-chunks-greedy-slots-v1",
|
| 12 |
+
"pool_policy": "Prime original registered train pools first. Topups use explicit IDs and must not be random-redrawn or require pool reprime.",
|
| 13 |
+
"raw_expression_files_read": [],
|
| 14 |
+
"schedule_slots": 16,
|
| 15 |
+
"schema_version": "pbisc_sdd.allcell_topup.v1",
|
| 16 |
+
"slot_assignment": "greedy lowest topup target-cell total; ties choose lowest slot index",
|
| 17 |
+
"slot_coverage": [
|
| 18 |
+
{
|
| 19 |
+
"schedule_slot": 0,
|
| 20 |
+
"topup_recipes": 242,
|
| 21 |
+
"topup_target_cells": 124512
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"schedule_slot": 1,
|
| 25 |
+
"topup_recipes": 223,
|
| 26 |
+
"topup_target_cells": 124477
|
| 27 |
+
},
|
| 28 |
+
{
|
| 29 |
+
"schedule_slot": 2,
|
| 30 |
+
"topup_recipes": 225,
|
| 31 |
+
"topup_target_cells": 124259
|
| 32 |
+
},
|
| 33 |
+
{
|
| 34 |
+
"schedule_slot": 3,
|
| 35 |
+
"topup_recipes": 208,
|
| 36 |
+
"topup_target_cells": 124247
|
| 37 |
+
},
|
| 38 |
+
{
|
| 39 |
+
"schedule_slot": 4,
|
| 40 |
+
"topup_recipes": 241,
|
| 41 |
+
"topup_target_cells": 124571
|
| 42 |
+
},
|
| 43 |
+
{
|
| 44 |
+
"schedule_slot": 5,
|
| 45 |
+
"topup_recipes": 224,
|
| 46 |
+
"topup_target_cells": 124344
|
| 47 |
+
},
|
| 48 |
+
{
|
| 49 |
+
"schedule_slot": 6,
|
| 50 |
+
"topup_recipes": 233,
|
| 51 |
+
"topup_target_cells": 125938
|
| 52 |
+
},
|
| 53 |
+
{
|
| 54 |
+
"schedule_slot": 7,
|
| 55 |
+
"topup_recipes": 243,
|
| 56 |
+
"topup_target_cells": 124399
|
| 57 |
+
},
|
| 58 |
+
{
|
| 59 |
+
"schedule_slot": 8,
|
| 60 |
+
"topup_recipes": 202,
|
| 61 |
+
"topup_target_cells": 124310
|
| 62 |
+
},
|
| 63 |
+
{
|
| 64 |
+
"schedule_slot": 9,
|
| 65 |
+
"topup_recipes": 232,
|
| 66 |
+
"topup_target_cells": 127329
|
| 67 |
+
},
|
| 68 |
+
{
|
| 69 |
+
"schedule_slot": 10,
|
| 70 |
+
"topup_recipes": 237,
|
| 71 |
+
"topup_target_cells": 124626
|
| 72 |
+
},
|
| 73 |
+
{
|
| 74 |
+
"schedule_slot": 11,
|
| 75 |
+
"topup_recipes": 196,
|
| 76 |
+
"topup_target_cells": 124340
|
| 77 |
+
},
|
| 78 |
+
{
|
| 79 |
+
"schedule_slot": 12,
|
| 80 |
+
"topup_recipes": 255,
|
| 81 |
+
"topup_target_cells": 124158
|
| 82 |
+
},
|
| 83 |
+
{
|
| 84 |
+
"schedule_slot": 13,
|
| 85 |
+
"topup_recipes": 283,
|
| 86 |
+
"topup_target_cells": 124820
|
| 87 |
+
},
|
| 88 |
+
{
|
| 89 |
+
"schedule_slot": 14,
|
| 90 |
+
"topup_recipes": 197,
|
| 91 |
+
"topup_target_cells": 124263
|
| 92 |
+
},
|
| 93 |
+
{
|
| 94 |
+
"schedule_slot": 15,
|
| 95 |
+
"topup_recipes": 217,
|
| 96 |
+
"topup_target_cells": 125337
|
| 97 |
+
}
|
| 98 |
+
],
|
| 99 |
+
"status": "PASS",
|
| 100 |
+
"tail_policy": "actual K without duplicate padding, including K below original 250 minimum",
|
| 101 |
+
"topup_recipes": 3658,
|
| 102 |
+
"topup_samples": 3599,
|
| 103 |
+
"topup_target_cells": 1995930,
|
| 104 |
+
"total_target_exposures_with_topup": 195639930,
|
| 105 |
+
"total_train_recipes_with_topup": 134730,
|
| 106 |
+
"train_cell_coverage_after_topup": 1.0,
|
| 107 |
+
"train_cells_covered_after_topup": 33141380,
|
| 108 |
+
"train_universe_cells": 33141380,
|
| 109 |
+
"validation": {
|
| 110 |
+
"duplicate_cells": 0,
|
| 111 |
+
"each_unseen_train_cell_exactly_once": true,
|
| 112 |
+
"nontrain_cells": 0,
|
| 113 |
+
"previously_seen_cells": 0,
|
| 114 |
+
"sample_boundary_violations": 0,
|
| 115 |
+
"status": "PASS",
|
| 116 |
+
"unique_topup_cells": 1995930,
|
| 117 |
+
"unseen_train_set_equality": true
|
| 118 |
+
}
|
| 119 |
+
}
|
topup/topup_cell_ids.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:733d738f37f5b3bb098da9a61cbde95f71cb2fc271af04392b9b0525f09c0c20
|
| 3 |
+
size 15967568
|
topup/topup_recipes.csv
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
topup/topup_sample_coverage.csv
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
topup/topup_slot_coverage.csv
ADDED
|
@@ -0,0 +1,17 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
schedule_slot,topup_recipes,topup_target_cells
|
| 2 |
+
0,242,124512
|
| 3 |
+
1,223,124477
|
| 4 |
+
2,225,124259
|
| 5 |
+
3,208,124247
|
| 6 |
+
4,241,124571
|
| 7 |
+
5,224,124344
|
| 8 |
+
6,233,125938
|
| 9 |
+
7,243,124399
|
| 10 |
+
8,202,124310
|
| 11 |
+
9,232,127329
|
| 12 |
+
10,237,124626
|
| 13 |
+
11,196,124340
|
| 14 |
+
12,255,124158
|
| 15 |
+
13,283,124820
|
| 16 |
+
14,197,124263
|
| 17 |
+
15,217,125337
|