Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw0/cat.csv

@@ -0,0 +1,301 @@
+dataset,design,unit,arm,predictor,celltype,k,k_eff,cat_same_sign,cat_any_sign,chance_same_sign,chance_any_sign,G_both,pred_defined,n_tested_obs,n_tested_pred
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+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@f04c5725,NK cell,200,200,0.16,0.16,0.020521239482864766,0.04104247896572953,4873,True,4891,5469
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@f04c5725,NK cell,500,500,0.152,0.176,0.05130309870716191,0.10260619741432382,4873,True,4891,5469
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,10,10,0.1,0.1,0.012658227848101266,0.02531645569620253,395,True,4635,395
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,20,20,0.05,0.1,0.02531645569620253,0.05063291139240506,395,True,4635,395
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,50,50,0.02,0.06,0.06329113924050633,0.12658227848101267,395,True,4635,395
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,100,100,0.02,0.05,0.12658227848101267,0.25316455696202533,395,True,4635,395
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,200,200,0.05,0.095,0.25316455696202533,0.5063291139240507,395,True,4635,395
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,500,500,0.084,0.136,0.5,1.0,395,True,4635,395
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@f04c5725,DC,10,10,0.0,0.0,0.0010829542993285683,0.0021659085986571367,4617,True,4635,5469
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@f04c5725,DC,20,20,0.05,0.05,0.0021659085986571367,0.004331817197314273,4617,True,4635,5469
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@f04c5725,DC,50,50,0.04,0.04,0.005414771496642842,0.010829542993285684,4617,True,4635,5469
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@f04c5725,DC,100,100,0.06,0.06,0.010829542993285684,0.021659085986571368,4617,True,4635,5469
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@f04c5725,DC,200,200,0.075,0.075,0.021659085986571368,0.043318171973142736,4617,True,4635,5469
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@f04c5725,DC,500,500,0.096,0.122,0.054147714966428416,0.10829542993285683,4617,True,4635,5469

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw0/ceiling.csv

@@ -0,0 +1,51 @@
+dataset,design,unit,predictor,arm,celltype,n_genes,pearson_mean,pearson_sd,spearman_mean,spearman_sd,pearson_s20260926,spearman_s20260926,pearson_s20260927,spearman_s20260927,pearson_s20260928,spearman_s20260928,pearson_s20260929,spearman_s20260929,pearson_s20260930,spearman_s20260930,sb_reliability_pearson,noise_free_ceiling_pearson,sb_reliability_spearman,noise_free_ceiling_spearman,min_n_case_donors_A,min_n_control_donors_A,min_n_case_donors_B,min_n_control_donors_B,mean_n_cells_A,mean_n_cells_B,condition_sha256
+giroux2022,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,T cell,2863.0,0.9561997301710438,0.0014421510109665443,0.9115525071025431,0.002113992903325208,0.9562124707266861,0.9094332255127764,0.9578696611434246,0.9141617656848446,0.9550264390449942,0.9104836878520813,0.9545265865665168,0.9102192182442843,0.9573634933735966,0.9134646382187285,0.9776095103411927,0.9887413768732412,0.9537300217656474,0.9765910207275343,6.0,5.0,6.0,5.0,29520.0,29524.0,
+giroux2022,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,B cell,3005.0,0.7779767445130714,0.00642631151630582,0.6373127763584343,0.011141526653439602,0.7815284808188496,0.6474150639456788,0.7853310897771532,0.6482705483746377,0.7804023632679897,0.6370128127773733,0.7699437896271418,0.6215094124315206,0.7726779990742224,0.6323560442629611,0.8751258945472128,0.9354816377391983,0.7784862923697313,0.882318702266778,6.0,5.0,6.0,5.0,4566.0,4573.0,
+giroux2022,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,Monocyte,3028.0,0.8985680895564027,0.0049383119497243624,0.7289580566778289,0.008125338619962926,0.891715900370757,0.7178429975266093,0.895051713711619,0.7228135580418895,0.9029009836428905,0.7362276316997775,0.9023738561475119,0.7338142883585441,0.9007979939092348,0.7340918077623237,0.9465745205549637,0.9729206136961863,0.8432339394959212,0.9182777028197522,6.0,5.0,6.0,5.0,9688.0,9696.0,
+giroux2022,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,NK cell,2910.0,0.8789064953041645,0.0034339942653977265,0.7785416961661509,0.006317347994010221,0.8797098510395384,0.7811001028684242,0.8815689336270914,0.7824633519087403,0.8774957029294409,0.7759450306549711,0.8820821752290011,0.7844558126297563,0.8736758136957504,0.7687441827688628,0.9355510745220813,0.9672388921678456,0.8754832094680559,0.9356725973694302,6.0,5.0,6.0,5.0,5509.0,5518.0,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,T cell,2863.0,0.16814053418482416,0.005244732375798771,0.02202292967693398,0.006918876676032331,0.16572456115663362,0.01725527226997738,0.16962656202044513,0.02760483338403715,0.17660179757291553,0.031039895812636175,0.16336732574086021,0.01511193321956988,0.16538242443326628,0.019102713698449302,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,B cell,3005.0,0.096828885142188,0.008832005621619059,0.031770005902009193,0.004718766123262882,0.10877454215778176,0.038714971255357375,0.09753785305914017,0.03081385835297406,0.08725400263726038,0.02912826334552581,0.08927257168788633,0.026399172447529217,0.10130545616887138,0.03379376410865949,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,Monocyte,3028.0,0.22544419080122763,0.006087350018504048,0.11816475757537456,0.009905223398223533,0.2355011214881284,0.1327559001446251,0.22348828184259953,0.10591635797788215,0.22101680513881017,0.11582306976088787,0.2265148064751626,0.12163161847523522,0.22069993906143748,0.11469684151824251,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,NK cell,2910.0,0.08499346158321669,0.006487124792893628,-0.010470663885051754,0.0061697365597860356,0.09063450445140202,-0.0025968819712162325,0.08635036420347743,-0.010585778731197043,0.07389387832789503,-0.013878429224780853,0.08580812952005079,-0.01852722290482867,0.08828043141325821,-0.0067650065932359634,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,T cell,2863.0,0.5257875560677583,0.0035308911561864284,0.4413003256368072,0.003295808873346951,0.5265536488133239,0.43776037734066275,0.5202706451161787,0.43802110371694175,0.5295055189462714,0.4433380355288139,0.5278021362362791,0.4421775414843016,0.5248058312267381,0.44520457011331616,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,B cell,3005.0,0.2796930803268345,0.007740404576271379,0.2144420188684426,0.0092148681474622,0.2718275059425176,0.20059292909892568,0.27400479511991366,0.21460505853483894,0.276876954212071,0.21180384709310163,0.2892033695099744,0.22455749232378097,0.2865527768496957,0.22065076729156588,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,Monocyte,3028.0,0.20709022693012025,0.011116492948753692,0.153599835448425,0.015990520301026614,0.1895654633637203,0.12655930137655097,0.21591215756395873,0.16513087021160885,0.2036065669363566,0.1520316167418329,0.2097944711892079,0.15986403226446635,0.21657247559735773,0.164413356647666,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,NK cell,2910.0,0.34457860192199724,0.004945653209901806,0.27171034010438067,0.005866204404671812,0.3379317436848744,0.2660863394939459,0.3473817561062318,0.2774128393077905,0.35047713926274787,0.27867973353655145,0.3414422006639964,0.2684016853213782,0.3456601698921358,0.26797110286223713,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_cal,zs_cal,T cell,2863.0,0.1242033974333043,0.001969541420598317,0.012521393097388051,0.0024891363307140042,0.12626066271391,0.01557347282875942,0.12111372826012583,0.010265488002543259,0.12405341882847759,0.009670046419864601,0.12550749464647293,0.013287391395071324,0.12408168271753517,0.01381056684070165,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_cal,zs_cal,B cell,3005.0,0.0760817111707018,0.009743460882813661,0.014187775956602002,0.010314516870068211,0.08126300713645032,0.018194755165926474,0.06737216492104113,0.005626842685188612,0.06506002678371337,0.006933741948812312,0.07837118605555614,0.009750680308273672,0.08834217095674801,0.030432859674808934,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_cal,zs_cal,Monocyte,3028.0,0.17686858381767306,0.0060968108882069804,0.08759698896278045,0.007380619646486451,0.18497568249463897,0.09866838186374467,0.1688376062161001,0.07832727690944265,0.17391134173571968,0.08894555870222749,0.17997753455898363,0.08487945318647944,0.17664075408292276,0.087164274152008,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_cal,zs_cal,NK cell,2910.0,0.06390017166110704,0.00843763240319886,-0.020685568597519122,0.014726468775143917,0.07534004357633235,-0.0011547498430992198,0.05935786457574624,-0.03625519624863115,0.05703032429844059,-0.025578480601740602,0.07044665408770068,-0.009749877581832806,0.05732597176731531,-0.030689538712291846,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:lora5,lora5,T cell,2863.0,0.3907971348576109,0.0025365298575328343,0.24557711428217469,0.003330750039856829,0.3890530357200246,0.24352534700484985,0.3891702249390761,0.2446278919158214,0.393395832001232,0.24794861615764363,0.38863419710250907,0.24180268571452176,0.3937323845252127,0.24998103061803661,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:lora5,lora5,B cell,3005.0,0.16279312716579022,0.008201444553172519,0.1164061580615305,0.010149478226322953,0.1667771354448179,0.12474676100283871,0.15123072318943884,0.10118796183553291,0.17160141469635137,0.12339517419324413,0.16671420468239878,0.12191982385877277,0.1576421578159442,0.110781069417264,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:lora5,lora5,Monocyte,3028.0,0.30381071731051074,0.007962624208276092,0.195844029546558,0.009936327527846473,0.31328986251175556,0.2105623242054931,0.29619972161508284,0.18671479650819106,0.2954963851537303,0.18653632876045775,0.3098558055627031,0.1985411715691122,0.304211811709282,0.19686552668953586,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:lora5,lora5,NK cell,2910.0,0.08781980817741952,0.004560127505203059,0.054072315210076126,0.007093867616589778,0.09233539810873352,0.06167711010204903,0.089870787844693,0.057017340405912845,0.08042852721044123,0.046064616620611336,0.08957582912463474,0.05860777341539891,0.0868884985985951,0.04699473550640849,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,T cell,2863.0,0.46290705037392066,0.0032009278308679913,0.40890042431730506,0.0024362984562233255,0.4666058956552183,0.4121639124367796,0.46077923234346607,0.40984405329230544,0.4660978395195517,0.4062717289444338,0.45973364395510063,0.40668895057753135,0.46131864039626674,0.40953347633547543,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,B cell,3005.0,0.24864964084803512,0.005803095413740419,0.14323546164196269,0.007349175272138808,0.24891202245583754,0.1330594378183461,0.25089278802064247,0.14953189742834372,0.2404659784146116,0.13783984138686578,0.2466663544905229,0.14847201565303628,0.2563110608585612,0.1472741159232216,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,Monocyte,3028.0,0.39371925950255504,0.0043946853325583695,0.22810301384593012,0.011094511270700165,0.38651470313680775,0.20854704321505427,0.39445963752236757,0.2353173704450271,0.3933957553037586,0.23362663058009034,0.39620253157966395,0.23294674373910135,0.39802366997017724,0.23007728125037755,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,NK cell,2910.0,0.3405581903201665,0.004656625294818076,0.24511967284197392,0.004572872195515232,0.3429295449166145,0.2446324237355776,0.3438813105919727,0.24554127466411896,0.34066767909184087,0.24792164107025239,0.34281446405922816,0.24973627337485016,0.33249795294117623,0.23776675136507033,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_raw.npz@ac755a41,,T cell,2863.0,0.46404266250800974,0.0019639290131978717,0.33114807321515416,0.006313469637793863,0.4620980830364124,0.321796684835038,0.46514063907812236,0.33803733417459486,0.46689153842461195,0.33293767032606414,0.4626412234873953,0.3282362306179618,0.4634418285135066,0.33473244612211195,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_raw.npz@ac755a41,,B cell,3005.0,0.37304965042025084,0.009376823884780615,0.3125676802530629,0.013353906862959937,0.3832318420508622,0.32488852285834907,0.36916308261389935,0.30114493346922344,0.3626545215095442,0.3038646635555899,0.3674687020486892,0.30372604180473906,0.38273010387825906,0.32921423957741314,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_raw.npz@ac755a41,,Monocyte,3028.0,0.6006502677161835,0.006611202121853081,0.4601921704889286,0.011161351117880376,0.5915478047172074,0.45715363302622347,0.5967687264951067,0.44450997301692546,0.6014269127933757,0.45732619690883325,0.6058058457930434,0.4700026181307449,0.6077020487821841,0.47196843136191585,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_raw.npz@ac755a41,,NK cell,2910.0,0.38937860233925115,0.006379018380571392,0.23883734304632415,0.010670667592824009,0.3953057530347014,0.25186058418594215,0.39112964103734704,0.2349103613595524,0.3785269435632057,0.22656706935398968,0.3919077535937335,0.24800161196952555,0.3900229204672683,0.23284708836261092,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@6400d82f,,T cell,2863.0,0.8184967545693373,0.0018809133521657708,0.8129315384646254,0.002334455346073494,0.8204082935730628,0.8130214236663662,0.820577681526055,0.8165349520067842,0.8172485299480424,0.8133851153984805,0.8164751699583038,0.8108261822326339,0.8177740978412226,0.8108900190188624,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@6400d82f,,B cell,3005.0,0.557059291445759,0.008035800464817958,0.52465573679262,0.009573594418636302,0.5548823117490372,0.5100271488767161,0.55844366611452,0.5221683483311763,0.5454987830926434,0.5250428742759081,0.5586699109853548,0.5312375662985729,0.5678017852872395,0.5348027461807267,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@6400d82f,,Monocyte,3028.0,0.66116832869379,0.011878282250921302,0.5689341394366076,0.017408320378506044,0.6407019986604344,0.5419921832574888,0.67085985231737,0.590263604044582,0.6675993311769136,0.5743360975558198,0.6627133524651911,0.570083459967109,0.6639671088490415,0.5679953523580384,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@6400d82f,,NK cell,2910.0,0.7178648123820178,0.005640452491441625,0.6789617405129874,0.0037134858942653092,0.7137023568344594,0.6755991663231934,0.7182554371907084,0.675799029094278,0.7220717767138601,0.6823004909548931,0.7108653957716886,0.6775863380615387,0.7244290953993724,0.6835236781310341,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@a1c99db4,,T cell,2863.0,0.4903872312738694,0.001656954844251284,0.33868273093552154,0.005315009032265328,0.4905011402163872,0.33119490535217655,0.4912930622080963,0.34479741615064685,0.49247927524280827,0.3402664427520653,0.4881493403862696,0.3356611064518619,0.4895133383157861,0.341493783970857,,,,,,,,,,,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@a1c99db4,,B cell,3005.0,0.3976606781434525,0.008989972503544736,0.31965358496943824,0.01330191933879085,0.408510093065462,0.33000380436907956,0.3938919455604958,0.30619752583031373,0.389726698055763,0.3122194099806396,0.3900856654881124,0.31249864263134325,0.4060889885474293,0.3373485420358151,,,,,,,,,,,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@a1c99db4,,Monocyte,3028.0,0.6062653415807384,0.007306950391705282,0.45738177141579583,0.011602880506601286,0.5968810233151004,0.4559563657888818,0.601487720870731,0.440582425497581,0.606402229616964,0.4536802213704303,0.6118106857585205,0.4680493581200333,0.6147450483423762,0.46864048630205274,,,,,,,,,,,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@a1c99db4,,NK cell,2910.0,0.4235086588751543,0.005297950220635425,0.24863329687424027,0.009962397849656295,0.42805981726245024,0.26043346021106134,0.42389315949806117,0.2431889584083089,0.41453712398963294,0.23634333965412985,0.42434769106521614,0.2570530135837231,0.42670550256041123,0.24614771251397805,,,,,,,,,,,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@f04c5725,,T cell,2863.0,0.46404266250800974,0.0019639290131978717,0.33114807321515416,0.006313469637793863,0.4620980830364124,0.321796684835038,0.46514063907812236,0.33803733417459486,0.46689153842461195,0.33293767032606414,0.4626412234873953,0.3282362306179618,0.4634418285135066,0.33473244612211195,,,,,,,,,,,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@f04c5725,,B cell,3005.0,0.37304965042025084,0.009376823884780615,0.3125676802530629,0.013353906862959937,0.3832318420508622,0.32488852285834907,0.36916308261389935,0.30114493346922344,0.3626545215095442,0.3038646635555899,0.3674687020486892,0.30372604180473906,0.38273010387825906,0.32921423957741314,,,,,,,,,,,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@f04c5725,,Monocyte,3028.0,0.6006502677161835,0.006611202121853081,0.4601921704889286,0.011161351117880376,0.5915478047172074,0.45715363302622347,0.5967687264951067,0.44450997301692546,0.6014269127933757,0.45732619690883325,0.6058058457930434,0.4700026181307449,0.6077020487821841,0.47196843136191585,,,,,,,,,,,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@f04c5725,,NK cell,2910.0,0.38937860233925115,0.006379018380571392,0.23883734304632415,0.010670667592824009,0.3953057530347014,0.25186058418594215,0.39112964103734704,0.2349103613595524,0.3785269435632057,0.22656706935398968,0.3919077535937335,0.24800161196952555,0.3900229204672683,0.23284708836261092,,,,,,,,,,,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9
+giroux2022,fewshot,fewshot_n5/draw0,split_half_A_vs_B,,mean4,,0.8779127648861704,0.0015242575785035046,0.7640912590762394,0.0019360301580990343,0.8772916757389577,0.7639478474633722,0.879955349564822,0.766927306002528,0.8789563722213288,0.7649172907460509,0.8772316018925429,0.7624996829160263,0.8761288250132011,0.762164168253219,0.9337152499913626,0.9660956301191179,0.862733365774839,0.9282150057958737,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_raw,zs_raw,mean4,,0.1438517679278641,0.004002033439185041,0.040371757317316494,0.003857999960759097,0.15015868231348645,0.0465323154246859,0.14425076528141556,0.03843731774592408,0.13969162091922027,0.04052819992356725,0.14124070835598998,0.03615387530937641,0.14391706276920835,0.040207078183028835,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_pseudo,zs_pseudo,mean4,,0.3392873663116775,0.0046476463800760055,0.27026313001451385,0.007090555173930055,0.331469590451109,0.25774973682752134,0.3393923384765707,0.273792467942795,0.3401165448393617,0.271463308225075,0.34206054439986444,0.2737501878484818,0.34339781339148184,0.2745599492286963,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:zs_cal,zs_cal,mean4,,0.11026346602069655,0.005528968814350574,0.023405147354812843,0.006785900531481538,0.11695984898033292,0.03282046500383284,0.10417034099325333,0.014491102837135842,0.10501377791158781,0.01999271661729095,0.11357571733717835,0.024541911826997904,0.11159764488113032,0.025179540488806683,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:lora5,lora5,mean4,,0.23630519687783286,0.003383089039570976,0.1529749042750848,0.004865326800696753,0.2403638579463329,0.16012788557880767,0.23161786439707271,0.14738699766636457,0.23523053976543873,0.1509861839329892,0.2386950091180614,0.1552178636394514,0.23561871316225852,0.15115559055781125,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,generated:scsemi5,scsemi5,mean4,,0.36145853526116933,0.0008916100097523766,0.2563396431617929,0.004154035755658286,0.3612405415411195,0.24960070430143938,0.3625032421196122,0.2600586489574488,0.3601568130824407,0.25641496049541057,0.3613542485211289,0.2594609958361298,0.36203783104154535,0.2561629062185362,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_raw.npz@ac755a41,,mean4,,0.45678029574592377,0.0031678349856878937,0.3356863167508674,0.005542299860001277,0.45804587070979585,0.3389248562263882,0.45555052230611887,0.329650650505074,0.45237497907268437,0.33017390003611924,0.45695588123071534,0.3374916256307428,0.46097422541030453,0.34219055135601295,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:all_usable_pseudo.npz@6400d82f,,mean4,,0.6886472967727262,0.004362602752148566,0.6463707888017101,0.006410649820374867,0.6824237402042485,0.6351599805309411,0.6920341592871634,0.6511914833692052,0.6881046052328649,0.6487661445462753,0.6871809572951346,0.6474333866399636,0.693493021844219,0.6493029489221653,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_cal.npz@a1c99db4,,mean4,,0.47945547746830375,0.0032768500838985452,0.3410878460487489,0.0062051375271010055,0.48098801846484995,0.3443971339302998,0.47764147203434604,0.33369158147171263,0.47578633172629203,0.33562735343931627,0.4785983456745297,0.3433155301967404,0.4842632194415007,0.34840763120567575,,,,,,,,,,,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c
+giroux2022,fewshot,fewshot_n5/draw0,broadcast:test_raw.npz@f04c5725,,mean4,,0.45678029574592377,0.0031678349856878937,0.3356863167508674,0.005542299860001277,0.45804587070979585,0.3389248562263882,0.45555052230611887,0.329650650505074,0.45237497907268437,0.33017390003611924,0.45695588123071534,0.3374916256307428,0.46097422541030453,0.34219055135601295,,,,,,,,,,,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw0/contrast.csv

@@ -0,0 +1,51 @@
+dataset,design,unit,arm,celltype,statistic,label,n_genes,pearson_r_generated,spearman_r_generated,pearson_r_broadcast,spearman_r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,condition,condition_sha256,pearson_r_generated_scorer,pearson_r_broadcast_scorer,partial_r_generated_given_broadcast_scorer,r_generated_vs_broadcast_scorer
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,T cell,mean_cp10k,"Zero-shot, real bulk",2863.0,0.16990664648197784,0.021152225353112213,0.4659672798536223,0.3346093603712192,-0.03959913492516847,0.43243102217563006,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.1699066464819778,0.4659672798536223,-0.0395991349251684,0.43243102217563
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,T cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",2863.0,0.11202549489469353,0.07727797997104029,0.5669062142141347,0.45026811154276264,-0.05973705563406185,0.2809180924410987,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.1120254948946935,0.5669062142141347,-0.0597370556340618,0.2809180924410987
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,B cell,mean_cp10k,"Zero-shot, real bulk",3005.0,0.10254434319676727,0.03062793879992141,0.3989038406365887,0.3450269468440968,-0.003999130066051559,0.26592742910264594,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.1025443431967672,0.3989038406365887,-0.0039991300660515,0.2659274291026459
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,B cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3005.0,0.055264888530697755,0.06042503950591723,0.4804240789506083,0.39586093780609893,-0.026577274875380936,0.16290349029101553,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.0552648885306977,0.4804240789506083,-0.0265772748753809,0.1629034902910155
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,Monocyte,mean_cp10k,"Zero-shot, real bulk",3028.0,0.22617416468176402,0.11643269279598117,0.6141260231172326,0.49132453949126886,0.0539667724320661,0.3021760836969932,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.226174164681764,0.6141260231172326,0.0539667724320661,0.3021760836969932
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3028.0,0.16808130268993487,0.15458934832189564,0.6247044807439144,0.5523826067757145,0.06341434792897722,0.19125454337550904,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.1680813026899348,0.6247044807439144,0.0634143479289772,0.191254543375509
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,NK cell,mean_cp10k,"Zero-shot, real bulk",2910.0,0.08704983197120215,-0.01636889587299676,0.40486451543783863,0.252243211476151,-0.01466462271259097,0.24710241587993592,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.0870498319712021,0.4048645154378386,-0.0146646227125909,0.2471024158799359
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,NK cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",2910.0,0.07730289058254076,0.03778399837949931,0.47190028654240307,0.3679751473971836,0.012167893935491983,0.14130673376920472,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.0773028905825407,0.471900286542403,0.0121678939354919,0.1413067337692047
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,T cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",2863.0,0.5310933989766661,0.4493388541962743,0.8261046749021539,0.8306689278265876,0.11827443443663634,0.5769939871241817,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.5310933989766661,0.8261046749021539,0.1182744344366363,0.5769939871241817
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,T cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",2863.0,0.3612307297710682,0.3739921939961071,0.89163883242594,0.8851293414286642,0.08334837746482165,0.36574162828572876,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.3612307297710682,0.89163883242594,0.0833483774648216,0.3657416282857287
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,B cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3005.0,0.28602707671471655,0.22576154791223557,0.5828215163461693,0.56109289559779,0.12459783382860475,0.32656628417042155,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.2860270767147165,0.5828215163461693,0.1245978338286047,0.3265662841704215
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,B cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3005.0,0.1444729405240163,0.16765809381979696,0.6752564483538035,0.6397965087304028,0.04880688635751875,0.16133934681225412,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.1444729405240163,0.6752564483538035,0.0488068863575187,0.1613393468122541
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,Monocyte,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3028.0,0.21407906203751048,0.16910170345246586,0.6751596007604104,0.6078409684156353,0.03610242090542673,0.2792027460838384,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.2140790620375104,0.6751596007604104,0.0361024209054267,0.2792027460838384
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3028.0,0.1881826815650642,0.19203525061517807,0.7921926305164546,0.7567825877182365,0.03478082040593482,0.21135827675056526,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.1881826815650642,0.7921926305164546,0.0347808204059348,0.2113582767505652
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,NK cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",2910.0,0.35963874954005165,0.28377468218403995,0.7411215696850915,0.7164374696869459,0.13561844337384868,0.37118499752284245,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.3596387495400516,0.7411215696850915,0.1356184433738486,0.3711849975228424
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,NK cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",2910.0,0.16800084887371888,0.19748741720294824,0.7782137886163856,0.7672662576176754,0.02782656386820071,0.19385067213979973,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.1680008488737188,0.7782137886163856,0.0278265638682007,0.1938506721397997
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,T cell,mean_cp10k,Zero-shot + calibration,2863.0,0.12575339062314342,0.011342388670797617,0.4930114840441739,0.34225562262977494,-0.006365086042275678,0.2659001025392269,test_cal.npz@a1c99db4,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c,0.1257533906231434,0.4930114840441739,-0.0063650860422756,0.2659001025392269
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,T cell,pseudobulk_log1p_cpm,Zero-shot + calibration,2863.0,0.15328500809578968,0.09061479955052952,0.5674717549567319,0.4506511363509731,0.053970271654550456,0.19328587706206338,test_cal.npz@a1c99db4,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c,0.1532850080957896,0.5674717549567319,0.0539702716545504,0.1932858770620633
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,B cell,mean_cp10k,Zero-shot + calibration,3005.0,0.07638084453215692,0.0043279582331917435,0.4260613729844554,0.3502252419373231,0.0033943971362508318,0.17217193452011334,test_cal.npz@a1c99db4,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c,0.0763808445321569,0.4260613729844554,0.0033943971362508,0.1721719345201133
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,B cell,pseudobulk_log1p_cpm,Zero-shot + calibration,3005.0,0.07526204283437682,0.04977334514982026,0.4829349404273398,0.39582703559605137,0.011327521439308859,0.13549340348365285,test_cal.npz@a1c99db4,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c,0.0752620428343768,0.4829349404273398,0.0113275214393088,0.1354934034836528
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,Monocyte,mean_cp10k,Zero-shot + calibration,3028.0,0.17767181148206185,0.08434753624311639,0.6185425746828103,0.4873376772164364,0.06039548938159281,0.21226903665648467,test_cal.npz@a1c99db4,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c,0.1776718114820618,0.6185425746828103,0.0603954893815928,0.2122690366564846
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,Monocyte,pseudobulk_log1p_cpm,Zero-shot + calibration,3028.0,0.09630673274937251,0.06959630590575076,0.6233115169371072,0.5513534817205625,0.04323390594694888,0.10054406846683941,test_cal.npz@a1c99db4,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c,0.0963067327493725,0.6233115169371072,0.0432339059469488,0.1005440684668394
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,NK cell,mean_cp10k,Zero-shot + calibration,2910.0,0.06823839650562213,-0.02286561330286028,0.4389954144831218,0.2610713806223052,-0.011224323481044476,0.17804785584282115,test_cal.npz@a1c99db4,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c,0.0682383965056221,0.4389954144831218,-0.0112243234810444,0.1780478558428211
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,NK cell,pseudobulk_log1p_cpm,Zero-shot + calibration,2910.0,0.11614717491966099,0.057645861229171334,0.47098636660658005,0.36736006272011756,0.057711888665223414,0.1395698070638672,test_cal.npz@a1c99db4,a1c99db4c3a3cf821f76061ceee697863adf3a2ca2a4462c8504241e39f0758c,0.1161471749196609,0.47098636660658,0.0577118886652234,0.1395698070638672
+giroux2022,fewshot,fewshot_n5/draw0,lora5,T cell,mean_cp10k,"LoRA, 5 donors",2863.0,0.39777463289585,0.25336069804650524,0.4659672798536223,0.3346093603712192,0.27907713479543056,0.359067951427801,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.39777463289585,0.4659672798536223,0.2790771347954305,0.359067951427801
+giroux2022,fewshot,fewshot_n5/draw0,lora5,T cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",2863.0,0.22545224405213732,0.2194072845183006,0.5669062142141347,0.45026811154276264,0.11685929098107141,0.23253306051480502,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.2254522440521373,0.5669062142141347,0.1168592909810714,0.232533060514805
+giroux2022,fewshot,fewshot_n5/draw0,lora5,B cell,mean_cp10k,"LoRA, 5 donors",3005.0,0.17412522136156192,0.12473923367696844,0.3989038406365887,0.3450269468440968,0.1191611998815517,0.1664028113065237,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.1741252213615619,0.3989038406365887,0.1191611998815517,0.1664028113065237
+giroux2022,fewshot,fewshot_n5/draw0,lora5,B cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",3005.0,0.045088324132888824,0.041858143703996785,0.4804240789506083,0.39586093780609893,0.027978046377795288,0.0428227290476081,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.0450883241328888,0.4804240789506083,0.0279780463777952,0.0428227290476081
+giroux2022,fewshot,fewshot_n5/draw0,lora5,Monocyte,mean_cp10k,"LoRA, 5 donors",3028.0,0.31275995647975996,0.20894458272636707,0.6141260231172326,0.49132453949126886,0.17597830215402158,0.29305740267751995,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.3127599564797599,0.6141260231172326,0.1759783021540215,0.2930574026775199
+giroux2022,fewshot,fewshot_n5/draw0,lora5,Monocyte,pseudobulk_log1p_cpm,"LoRA, 5 donors",3028.0,0.16005138105975206,0.161456400724594,0.6247044807439144,0.5523826067757145,0.06888276034772148,0.17137583893235642,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.160051381059752,0.6247044807439144,0.0688827603477214,0.1713758389323564
+giroux2022,fewshot,fewshot_n5/draw0,lora5,NK cell,mean_cp10k,"LoRA, 5 donors",2910.0,0.08890903998972409,0.05377316309401085,0.40486451543783863,0.252243211476151,0.0272221359445175,0.1589025787933349,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.088909039989724,0.4048645154378386,0.0272221359445175,0.1589025787933349
+giroux2022,fewshot,fewshot_n5/draw0,lora5,NK cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",2910.0,0.01681102070261924,0.020290343730708184,0.47190028654240307,0.3679751473971836,-0.006293716900898378,0.047369454986509546,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.0168110207026192,0.471900286542403,-0.0062937169008983,0.0473694549865095
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,T cell,mean_cp10k,"scSemiProfiler, 5 donors",2863.0,0.46735463296644486,0.4138810948829288,0.4659672798536223,0.3346093603712192,0.34749614888937036,0.39750552400857864,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.4673546329664448,0.4659672798536223,0.3474961488893703,0.3975055240085786
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,T cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",2863.0,0.34827344497085433,0.3461083817531385,0.5669062142141347,0.45026811154276264,0.19601272711974263,0.3472330645074141,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.3482734449708543,0.5669062142141347,0.1960127271197426,0.3472330645074141
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,B cell,mean_cp10k,"scSemiProfiler, 5 donors",3005.0,0.2587002395956989,0.14804582896741428,0.3989038406365887,0.3450269468440968,0.16121144308346963,0.2943566948184918,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.2587002395956989,0.3989038406365887,0.1612114430834696,0.2943566948184918
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,B cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3005.0,0.1386183341444636,0.12058718852370945,0.4804240789506083,0.39586093780609893,0.04085321481118087,0.2157096315216823,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.1386183341444636,0.4804240789506083,0.0408532148111808,0.2157096315216823
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,Monocyte,mean_cp10k,"scSemiProfiler, 5 donors",3028.0,0.4061475264700938,0.24176200072862647,0.6141260231172326,0.49132453949126886,0.2138540965167711,0.410777253752026,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.4061475264700938,0.6141260231172326,0.2138540965167711,0.410777253752026
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,Monocyte,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3028.0,0.22501588355075625,0.19366594124339503,0.6247044807439144,0.5523826067757145,0.07285201583142532,0.27258125574448294,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.2250158835507562,0.6247044807439144,0.0728520158314253,0.2725812557444829
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,NK cell,mean_cp10k,"scSemiProfiler, 5 donors",2910.0,0.3531914377274489,0.24894544039253683,0.40486451543783863,0.252243211476151,0.22542350431277358,0.4074279854053754,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.3531914377274489,0.4048645154378386,0.2254235043127735,0.4074279854053754
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,NK cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",2910.0,0.1877620025634945,0.16770594113635115,0.47190028654240307,0.3679751473971836,0.05796168097057235,0.29439398310011444,test_raw.npz@f04c5725,f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9,0.1877620025634945,0.471900286542403,0.0579616809705723,0.2943939831001144
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,mean4,mean_cp10k,"Zero-shot, real bulk",,0.14641874658292783,0.03796099026900451,0.4709654147613206,0.35580101454568397,-0.0010740288179362238,0.3119092377138013,,,0.14641874658292778,0.47096541476132053,-0.0010740288179361753,0.31190923771380125
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,mean4,pseudobulk_log1p_cpm,"Zero-shot, real bulk",,0.10316864417446674,0.08251909154458811,0.5359837651127651,0.44162170088043995,-0.002683022161243395,0.19409571496920702,,,0.10316864417446667,0.5359837651127651,-0.002683022161243402,0.19409571496920697
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,mean4,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",,0.34770957181723616,0.28199419693625394,0.7063018404234562,0.6790100653817397,0.10364828313612912,0.388487003725321,,,0.34770957181723616,0.7063018404234562,0.10364828313612907,0.38848700372532097
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,mean4,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",,0.2154718001834669,0.2327932389085076,0.784325424978146,0.7622436738737447,0.04869066202411898,0.233072480997087,,,0.21547180018346687,0.784325424978146,0.04869066202411895,0.2330724809970869
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,mean4,mean_cp10k,Zero-shot + calibration,,0.11201111078574608,0.01928806746106137,0.4941527115486404,0.36022248060145995,0.011550119248630872,0.20709723238966152,,,0.11201111078574605,0.4941527115486404,0.0115501192486309,0.2070972323896615
+giroux2022,fewshot,fewshot_n5/draw0,zs_cal,mean4,pseudobulk_log1p_cpm,Zero-shot + calibration,,0.11025023964979999,0.06690757795881797,0.5361761447319398,0.4412979290969261,0.041560896926507905,0.14222328901910572,,,0.11025023964979996,0.5361761447319398,0.04156089692650785,0.14222328901910566
+giroux2022,fewshot,fewshot_n5/draw0,lora5,mean4,mean_cp10k,"LoRA, 5 donors",,0.243392212681724,0.1602044193859629,0.4709654147613206,0.35580101454568397,0.15035969319388034,0.24435768605129488,,,0.24339221268172392,0.47096541476132053,0.15035969319388032,0.24435768605129488
+giroux2022,fewshot,fewshot_n5/draw0,lora5,mean4,pseudobulk_log1p_cpm,"LoRA, 5 donors",,0.11185074248684936,0.11075304316939989,0.5359837651127651,0.44162170088043995,0.05185659520142245,0.12352527087031978,,,0.11185074248684931,0.5359837651127651,0.05185659520142242,0.12352527087031974
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,mean4,mean_cp10k,"scSemiProfiler, 5 donors",,0.37134845918992154,0.2631585912428766,0.4709654147613206,0.35580101454568397,0.23699629820059617,0.377516864496118,,,0.37134845918992154,0.47096541476132053,0.23699629820059612,0.377516864496118
+giroux2022,fewshot,fewshot_n5/draw0,scsemi5,mean4,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",,0.22491741630739215,0.20701686316414855,0.5359837651127651,0.44162170088043995,0.0919199096832303,0.28247948371842346,,,0.22491741630739215,0.5359837651127651,0.09191990968323026,0.2824794837184234

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw0/deg_limma.csv

@@ -0,0 +1,76 @@
+dataset,design,unit,arm,celltype,method,deg_scored,pred_defined,overlap,overlap_scorer,obs_list_size,gen_list_size,n_sig_obs,n_sig_gen,n_tested_obs,n_tested_gen,G_both,chance_overlap,broadcast_overlap,broadcast_overlap_scorer,broadcast_list_size,n_sig_broadcast,n_tested_broadcast,G_both_broadcast,broadcast_chance_overlap,condition
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,T cell,welch,True,True,0,0.0,1,0,1,0,5216,3980,3965,0.0,0,0.0,0,0,5469,5194,0.0,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,B cell,welch,True,True,0,0.0,2,0,2,0,4912,3525,3506,0.0,0,0.0,0,0,5469,4893,0.0,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,Monocyte,welch,True,True,0,0.0,0,0,0,0,5113,3798,3780,0.0,0,0.0,0,0,5469,5091,0.0,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,NK cell,welch,True,True,0,0.0,0,0,0,0,4891,3390,3380,0.0,0,0.0,0,0,5469,4873,0.0,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw0,zs_raw,DC,welch,True,True,0,0.0,0,0,0,0,4635,3278,3263,0.0,0,0.0,0,0,5469,4617,0.0,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,T cell,welch,True,True,0,0.0,1,0,1,0,5216,3540,3535,0.0,1,1.0,7,7,5335,5216,0.0013420245398773007,all_usable_pseudo.npz@6400d82f
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,B cell,welch,True,True,0,0.0,2,0,2,0,4912,2727,2723,0.0,0,0.0,7,7,5335,4912,0.0028501628664495114,all_usable_pseudo.npz@6400d82f
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,Monocyte,welch,True,True,0,0.0,0,0,0,0,5113,2955,2952,0.0,0,0.0,7,7,5335,5113,0.0,all_usable_pseudo.npz@6400d82f
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,NK cell,welch,True,True,0,0.0,0,0,0,0,4891,2656,2654,0.0,0,0.0,7,7,5335,4891,0.0,all_usable_pseudo.npz@6400d82f
+giroux2022,fewshot,fewshot_n5/draw0,zs_pseudo,DC,welch,True,True,0,0.0,0,1,0,1,4635,2061,2059,0.0,0,0.0,7,7,5335,4635,0.0,all_usable_pseudo.npz@6400d82f
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