Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/cv2/state_types.tsv +30 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/cv2_full/SPLIT.json +146 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/cv2_full/state_types.tsv +30 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/cv3/SPLIT.json +145 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/cv2/state_types.tsv
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| 1 |
+
state type n_cells
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| 2 |
+
B cell|Effector B cell B cell 1754
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| 3 |
+
B cell|Memory B cell B cell 14393
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| 4 |
+
B cell|Naive B cell B cell 5101
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| 5 |
+
B cell|Plasma cell B cell 428
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| 6 |
+
B cell|Transitional B cell B cell 1409
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| 7 |
+
DC|ASDC DC 190
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| 8 |
+
DC|cDC1 DC 335
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| 9 |
+
DC|cDC2 DC 5352
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| 10 |
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DC|pDC DC 1432
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| 11 |
+
Monocyte|CD14 monocyte Monocyte 40015
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| 12 |
+
Monocyte|CD16 monocyte Monocyte 8535
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| 13 |
+
Monocyte|Intermediate monocyte Monocyte 5512
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| 14 |
+
NK cell|CD56bright NK cell NK cell 6103
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| 15 |
+
NK cell|CD56dim NK cell NK cell 17096
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| 16 |
+
NK cell|Proliferating NK cell NK cell 4692
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| 17 |
+
Other|Erythrocyte Other 303
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| 18 |
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Other|ILC Other 957
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| 19 |
+
Other|Platelet Other 61
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| 20 |
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Other|Progenitor cell Other 471
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| 21 |
+
T cell|CD8aa T cell 11679
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| 22 |
+
T cell|DN T cell T cell 2143
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| 23 |
+
T cell|MAIT T cell 10304
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| 24 |
+
T cell|Memory CD4 T cell T cell 47256
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| 25 |
+
T cell|Memory CD8 T cell T cell 23327
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| 26 |
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T cell|Naive CD4 T cell T cell 51038
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| 27 |
+
T cell|Naive CD8 T cell T cell 30015
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| 28 |
+
T cell|Proliferating T cell T cell 534
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| 29 |
+
T cell|Treg T cell 11691
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| 30 |
+
T cell|gdT T cell 14535
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/cv2_full/SPLIT.json
ADDED
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{
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"dataset": "immicro",
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"kind": "cv",
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"idx": 2,
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| 5 |
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"reference": [
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| 6 |
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"HS1",
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| 7 |
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"HS2",
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| 8 |
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"HS3",
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| 9 |
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"HS6",
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| 10 |
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"HS7",
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"HS8",
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"HS10",
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"HS11",
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"HS12",
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"HS13",
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"HS15",
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"HS16",
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"HS17",
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"HS18",
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| 20 |
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"HS21",
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| 21 |
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"HS23",
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| 22 |
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"HS27",
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| 23 |
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"HS28",
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| 24 |
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"HS29",
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| 25 |
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"HS30",
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| 26 |
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"HS31",
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| 27 |
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"HS34",
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| 28 |
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"HS35",
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| 29 |
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"HS38",
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| 30 |
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"HS39",
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"HS40",
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| 32 |
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"HS41",
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| 33 |
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"HS44",
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| 34 |
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"HS45",
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| 35 |
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"HS47",
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| 36 |
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"HS48",
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| 37 |
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"HS49",
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| 38 |
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"HS51",
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| 39 |
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"HS52",
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| 40 |
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"HS53",
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| 41 |
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"HS54",
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| 42 |
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"HS56",
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| 43 |
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"HS57",
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| 44 |
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"HS58",
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| 45 |
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"HS60",
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| 46 |
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"HS61",
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| 47 |
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"HS63",
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| 48 |
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"HS64",
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| 49 |
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"HS65",
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| 50 |
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"HS66",
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| 51 |
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"HS68",
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| 52 |
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"HS69",
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| 53 |
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"HS70",
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| 54 |
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"HS72",
|
| 55 |
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"HS74",
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| 56 |
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"HS75",
|
| 57 |
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"HS76",
|
| 58 |
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"HS77",
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| 59 |
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"HS78",
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| 60 |
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"HS79",
|
| 61 |
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"HS81",
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| 62 |
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"HS83",
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| 63 |
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"HS84",
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| 64 |
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"HS85",
|
| 65 |
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"HS86",
|
| 66 |
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"HS87",
|
| 67 |
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"HS88",
|
| 68 |
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"HS89",
|
| 69 |
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"HS90",
|
| 70 |
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"HS92",
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| 71 |
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"HS93",
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| 72 |
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"HS94",
|
| 73 |
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"HS95",
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| 74 |
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"HS96",
|
| 75 |
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"HS97",
|
| 76 |
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"HS98",
|
| 77 |
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"HS100",
|
| 78 |
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"HS101",
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| 79 |
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"HS103",
|
| 80 |
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"HS104",
|
| 81 |
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"HS106",
|
| 82 |
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"HS107",
|
| 83 |
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"HS109",
|
| 84 |
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"HS110",
|
| 85 |
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"HS4",
|
| 86 |
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"HS20",
|
| 87 |
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"HS36",
|
| 88 |
+
"HS37",
|
| 89 |
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"HS46",
|
| 90 |
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"HS62",
|
| 91 |
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"HS82"
|
| 92 |
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],
|
| 93 |
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"mixture": [
|
| 94 |
+
"HS9",
|
| 95 |
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"HS14",
|
| 96 |
+
"HS19",
|
| 97 |
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"HS24",
|
| 98 |
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"HS25",
|
| 99 |
+
"HS26",
|
| 100 |
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"HS32",
|
| 101 |
+
"HS42",
|
| 102 |
+
"HS43",
|
| 103 |
+
"HS50",
|
| 104 |
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"HS55",
|
| 105 |
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"HS59",
|
| 106 |
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"HS67",
|
| 107 |
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"HS71",
|
| 108 |
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"HS73",
|
| 109 |
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"HS80",
|
| 110 |
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"HS91",
|
| 111 |
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"HS102",
|
| 112 |
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"HS105",
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| 113 |
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"HS108",
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| 114 |
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"HS111"
|
| 115 |
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],
|
| 116 |
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"run_json_check": true,
|
| 117 |
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"n_train_rows": 79,
|
| 118 |
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"n_inner_val_rows": 7,
|
| 119 |
+
"n_reference_samples": 86,
|
| 120 |
+
"n_mixture_samples": 21,
|
| 121 |
+
"reference_cells": 316661,
|
| 122 |
+
"states": 29,
|
| 123 |
+
"states_merged_minor": 0,
|
| 124 |
+
"types": [
|
| 125 |
+
"B cell",
|
| 126 |
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"DC",
|
| 127 |
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"Monocyte",
|
| 128 |
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"NK cell",
|
| 129 |
+
"Other",
|
| 130 |
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"T cell"
|
| 131 |
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],
|
| 132 |
+
"missing_types": [],
|
| 133 |
+
"bp_axis_genes": 15404,
|
| 134 |
+
"genes_kept": 15226,
|
| 135 |
+
"genes_dropped_not_bulk_valid": 17,
|
| 136 |
+
"genes_dropped_zero_reference": 161,
|
| 137 |
+
"gene_mode": "full",
|
| 138 |
+
"aggregates_sha256": "4215e1c95c8ff835ea4867157ac47c5ae1b7cc8c51c4f4b5457e4c2e537b9aca",
|
| 139 |
+
"files": {
|
| 140 |
+
"reference.tsv.gz": "708c74597d1c04d668c5cbde34a4a8293328ad6409271b7bc81397b810cd5c85",
|
| 141 |
+
"state_types.tsv": "658b340020eaea5503b732abcc177aaf69f07722db040fc8e81ffa90b7cc060e",
|
| 142 |
+
"mixture.tsv.gz": "399e2282c1863e37cf4334d5b8e74725e860e57d9309f463779dd4967953f38b"
|
| 143 |
+
},
|
| 144 |
+
"tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
|
| 145 |
+
"common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
|
| 146 |
+
}
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/cv2_full/state_types.tsv
ADDED
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| 1 |
+
state type n_cells
|
| 2 |
+
B cell|Effector B cell B cell 1754
|
| 3 |
+
B cell|Memory B cell B cell 14393
|
| 4 |
+
B cell|Naive B cell B cell 5101
|
| 5 |
+
B cell|Plasma cell B cell 428
|
| 6 |
+
B cell|Transitional B cell B cell 1409
|
| 7 |
+
DC|ASDC DC 190
|
| 8 |
+
DC|cDC1 DC 335
|
| 9 |
+
DC|cDC2 DC 5352
|
| 10 |
+
DC|pDC DC 1432
|
| 11 |
+
Monocyte|CD14 monocyte Monocyte 40015
|
| 12 |
+
Monocyte|CD16 monocyte Monocyte 8535
|
| 13 |
+
Monocyte|Intermediate monocyte Monocyte 5512
|
| 14 |
+
NK cell|CD56bright NK cell NK cell 6103
|
| 15 |
+
NK cell|CD56dim NK cell NK cell 17096
|
| 16 |
+
NK cell|Proliferating NK cell NK cell 4692
|
| 17 |
+
Other|Erythrocyte Other 303
|
| 18 |
+
Other|ILC Other 957
|
| 19 |
+
Other|Platelet Other 61
|
| 20 |
+
Other|Progenitor cell Other 471
|
| 21 |
+
T cell|CD8aa T cell 11679
|
| 22 |
+
T cell|DN T cell T cell 2143
|
| 23 |
+
T cell|MAIT T cell 10304
|
| 24 |
+
T cell|Memory CD4 T cell T cell 47256
|
| 25 |
+
T cell|Memory CD8 T cell T cell 23327
|
| 26 |
+
T cell|Naive CD4 T cell T cell 51038
|
| 27 |
+
T cell|Naive CD8 T cell T cell 30015
|
| 28 |
+
T cell|Proliferating T cell T cell 534
|
| 29 |
+
T cell|Treg T cell 11691
|
| 30 |
+
T cell|gdT T cell 14535
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/cv3/SPLIT.json
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| 1 |
+
{
|
| 2 |
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"dataset": "immicro",
|
| 3 |
+
"kind": "cv",
|
| 4 |
+
"idx": 3,
|
| 5 |
+
"reference": [
|
| 6 |
+
"HS2",
|
| 7 |
+
"HS6",
|
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