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junidude14 commited on
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Archive 4 checkpoints (1-4)

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Files changed (4) hide show
  1. paper-releases/pbisc-diffusion/updates/20261006T033406Z-bulkonly-lora5-k1000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_20261006/logs/run_sampling_20261006T021549.log +51 -0
  2. paper-releases/pbisc-diffusion/updates/20261006T033406Z-bulkonly-lora5-k1000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_20261006/logs/share_r2_20261006T074307.log +14 -0
  3. paper-releases/pbisc-diffusion/updates/20261006T033406Z-bulkonly-lora5-k1000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_20261006/logs/share_r2_20261006T122449.log +14 -0
  4. paper-releases/pbisc-diffusion/updates/20261006T033406Z-bulkonly-lora5-k1000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_20261006/logs/ye2026_sepsis-bulkonly-d0.log +1 -0
paper-releases/pbisc-diffusion/updates/20261006T033406Z-bulkonly-lora5-k1000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_20261006/logs/run_sampling_20261006T021549.log ADDED
@@ -0,0 +1,51 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ 2026-10-06T02:15:49 ye2026_sepsis draw0: done already; skipped
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+ 2026-10-06T02:15:49 ye2026_sepsis draw1: done already; skipped
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+ 2026-10-06T02:15:49 ye2026_sepsis draw2: done already; skipped
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+ 2026-10-06T02:15:49 ye2026_sepsis draw3: done already; skipped
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+ 2026-10-06T02:15:49 ye2026_sepsis draw4: done already; skipped
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+ 2026-10-06T02:15:49 imperial_eskd draw0: sampling with /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/ckpt_tmp/imperial_eskd/draw0/checkpoint_ft.pt (sha c544889e58c7)
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+ 2026-10-06T02:15:50 queue=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/queues/imperial_eskd_draw0.txt ckpt=checkpoint_ft.pt sha=c544889e58c7 steps=50 readout=bernoulli thr=0.0 py=/home/sj_server_1/miniforge3/envs/b2sc-cu130/bin/python
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+ 2026-10-06T02:15:54 --- imperial_eskd_bulkonly_d0_part0 seed=20260927 (ok: 62C; GPU via ml-run flock)
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+ 2026-10-06T02:36:09 imperial_eskd_bulkonly_d0_part0 done: cells ? zero_frac 0.9387 62da7ac688ef
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+ 2026-10-06T02:36:13 --- imperial_eskd_bulkonly_d0_part1 seed=840262485 (ok: 56C; GPU via ml-run flock)
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+ 2026-10-06T02:41:21 imperial_eskd_bulkonly_d0_part1 done: cells ? zero_frac 0.9367 fbf3bf41d620
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+ 2026-10-06T02:41:21 queue finished: ok=2 failed=0
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+ 2026-10-06T02:41:21 imperial_eskd draw0: lora5_bulkonly_part0.npz bulks 82 zero_frac 0.9387 sha 62da7ac688ef
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+ 2026-10-06T02:41:21 imperial_eskd draw0: lora5_bulkonly_part1.npz bulks 82 zero_frac 0.9367 sha fbf3bf41d620
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+ 2026-10-06T02:41:21 imperial_eskd draw1: sampling with /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/ckpt_tmp/imperial_eskd/draw1/checkpoint_ft.pt (sha 66f080b4bb93)
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+ 2026-10-06T02:41:22 queue=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/queues/imperial_eskd_draw1.txt ckpt=checkpoint_ft.pt sha=66f080b4bb93 steps=50 readout=bernoulli thr=0.0 py=/home/sj_server_1/miniforge3/envs/b2sc-cu130/bin/python
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+ 2026-10-06T02:41:26 --- imperial_eskd_bulkonly_d1_part0 seed=20260927 (ok: 56C; GPU via ml-run flock)
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+ 2026-10-06T02:46:33 imperial_eskd_bulkonly_d1_part0 done: cells ? zero_frac 0.9418 1975db3ba6ca
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+ 2026-10-06T02:46:38 --- imperial_eskd_bulkonly_d1_part1 seed=840262485 (ok: 59C; GPU via ml-run flock)
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+ 2026-10-06T02:51:44 imperial_eskd_bulkonly_d1_part1 done: cells ? zero_frac 0.9419 18d80285f5eb
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+ 2026-10-06T02:51:44 queue finished: ok=2 failed=0
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+ 2026-10-06T02:51:44 imperial_eskd draw1: lora5_bulkonly_part0.npz bulks 82 zero_frac 0.9418 sha 1975db3ba6ca
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+ 2026-10-06T02:51:44 imperial_eskd draw1: lora5_bulkonly_part1.npz bulks 82 zero_frac 0.9419 sha 18d80285f5eb
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+ 2026-10-06T02:51:44 imperial_eskd draw2: sampling with /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/ckpt_tmp/imperial_eskd/draw2/checkpoint_ft.pt (sha 219d51165970)
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+ 2026-10-06T02:51:44 queue=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/queues/imperial_eskd_draw2.txt ckpt=checkpoint_ft.pt sha=219d51165970 steps=50 readout=bernoulli thr=0.0 py=/home/sj_server_1/miniforge3/envs/b2sc-cu130/bin/python
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+ 2026-10-06T02:51:48 --- imperial_eskd_bulkonly_d2_part0 seed=20260927 (cooled to 57C (<= 65C resume mark); releasing; GPU via ml-run flock)
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+ 2026-10-06T02:56:53 imperial_eskd_bulkonly_d2_part0 done: cells ? zero_frac 0.9459 6ce5ac65231a
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+ 2026-10-06T02:56:57 --- imperial_eskd_bulkonly_d2_part1 seed=840262485 (ok: 56C; GPU via ml-run flock)
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+ 2026-10-06T03:02:01 imperial_eskd_bulkonly_d2_part1 done: cells ? zero_frac 0.9459 1c04ad758d40
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+ 2026-10-06T03:02:01 queue finished: ok=2 failed=0
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+ 2026-10-06T03:02:01 imperial_eskd draw2: lora5_bulkonly_part0.npz bulks 82 zero_frac 0.9459 sha 6ce5ac65231a
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+ 2026-10-06T03:02:01 imperial_eskd draw2: lora5_bulkonly_part1.npz bulks 82 zero_frac 0.9459 sha 1c04ad758d40
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+ 2026-10-06T03:02:01 imperial_eskd draw3: sampling with /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/ckpt_tmp/imperial_eskd/draw3/checkpoint_ft.pt (sha 583e363cc050)
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+ 2026-10-06T03:02:01 queue=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/queues/imperial_eskd_draw3.txt ckpt=checkpoint_ft.pt sha=583e363cc050 steps=50 readout=bernoulli thr=0.0 py=/home/sj_server_1/miniforge3/envs/b2sc-cu130/bin/python
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+ 2026-10-06T03:02:05 --- imperial_eskd_bulkonly_d3_part0 seed=20260927 (cooled to 56C (<= 65C resume mark); releasing; GPU via ml-run flock)
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+ 2026-10-06T03:07:19 imperial_eskd_bulkonly_d3_part0 done: cells ? zero_frac 0.9339 a6ba10f723a5
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+ 2026-10-06T03:07:24 --- imperial_eskd_bulkonly_d3_part1 seed=840262485 (ok: 59C; GPU via ml-run flock)
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+ 2026-10-06T03:12:35 imperial_eskd_bulkonly_d3_part1 done: cells ? zero_frac 0.9339 90695936fccd
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+ 2026-10-06T03:12:35 queue finished: ok=2 failed=0
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+ 2026-10-06T03:12:35 imperial_eskd draw3: lora5_bulkonly_part0.npz bulks 82 zero_frac 0.9339 sha a6ba10f723a5
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+ 2026-10-06T03:12:35 imperial_eskd draw3: lora5_bulkonly_part1.npz bulks 82 zero_frac 0.9339 sha 90695936fccd
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+ 2026-10-06T03:12:35 imperial_eskd draw4: sampling with /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/ckpt_tmp/imperial_eskd/draw4/checkpoint_ft.pt (sha b10b12316b56)
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+ 2026-10-06T03:12:35 queue=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_20261006/queues/imperial_eskd_draw4.txt ckpt=checkpoint_ft.pt sha=b10b12316b56 steps=50 readout=bernoulli thr=0.0 py=/home/sj_server_1/miniforge3/envs/b2sc-cu130/bin/python
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+ 2026-10-06T03:12:40 --- imperial_eskd_bulkonly_d4_part0 seed=20260927 (ok: 56C; GPU via ml-run flock)
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+ 2026-10-06T03:17:46 imperial_eskd_bulkonly_d4_part0 done: cells ? zero_frac 0.9419 0345718fa65a
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+ 2026-10-06T03:17:51 --- imperial_eskd_bulkonly_d4_part1 seed=840262485 (ok: 58C; GPU via ml-run flock)
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+ 2026-10-06T03:22:56 imperial_eskd_bulkonly_d4_part1 done: cells ? zero_frac 0.9415 39db810534af
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+ 2026-10-06T03:22:56 queue finished: ok=2 failed=0
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+ 2026-10-06T03:22:56 imperial_eskd draw4: lora5_bulkonly_part0.npz bulks 82 zero_frac 0.9419 sha 0345718fa65a
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+ 2026-10-06T03:22:56 imperial_eskd draw4: lora5_bulkonly_part1.npz bulks 82 zero_frac 0.9415 sha 39db810534af
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+ 2026-10-06T03:22:56 all sets attempted; failed=0
paper-releases/pbisc-diffusion/updates/20261006T033406Z-bulkonly-lora5-k1000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_20261006/logs/share_r2_20261006T074307.log ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ 2026-10-06T07:43:16 staged analysis: 275M
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+ 2026-10-06T07:43:50 sha256 of 51 objects -> SHA256SUMS
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+ 2026-10-06T07:43:50 uploading share/
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+ 2026/10/06 07:44:14 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006: 0 differences found
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+ 2026/10/06 07:44:14 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006: 15 matching files
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+ 2026-10-06T07:44:14 uploading analysis/
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+ 2026/10/06 07:44:24 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006/analysis: 0 differences found
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+ 2026/10/06 07:44:24 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006/analysis: 7 matching files
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+ 2026-10-06T07:44:24 uploading raw NPZs
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+ 2026/10/06 08:00:04 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006/raw_npz: 0 differences found
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+ 2026/10/06 08:00:04 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006/raw_npz: 30 matching files
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+ 2026-10-06T08:00:04 all uploads checked (sizes)
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+ 2026-10-06T08:00:04 making presigned links (expire 168h)
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+ 2026-10-06T08:00:31 index uploaded; HTTP 200; 52 files linked; links valid until 2026-10-13 08:00 KST
paper-releases/pbisc-diffusion/updates/20261006T033406Z-bulkonly-lora5-k1000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_20261006/logs/share_r2_20261006T122449.log ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ 2026-10-06T12:25:06 staged analysis: 510M
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+ 2026-10-06T12:25:44 sha256 of 54 objects -> SHA256SUMS
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+ 2026-10-06T12:25:44 uploading share/
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+ 2026/10/06 12:25:46 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006: 0 differences found
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+ 2026/10/06 12:25:46 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006: 15 matching files
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+ 2026-10-06T12:25:46 uploading analysis/
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+ 2026/10/06 12:25:59 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006/analysis: 0 differences found
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+ 2026/10/06 12:25:59 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006/analysis: 9 matching files
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+ 2026-10-06T12:25:59 uploading raw NPZs
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+ 2026/10/06 12:26:01 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006/raw_npz: 0 differences found
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+ 2026/10/06 12:26:01 NOTICE: S3 bucket pbisc-data-private path shares/bulkonly_lora5_20261006/raw_npz: 30 matching files
12
+ 2026-10-06T12:26:01 all uploads checked (sizes)
13
+ 2026-10-06T12:26:01 making presigned links (expire 168h)
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+ 2026-10-06T12:26:30 index uploaded; HTTP 200; 54 files linked; links valid until 2026-10-13 12:26 KST
paper-releases/pbisc-diffusion/updates/20261006T033406Z-bulkonly-lora5-k1000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_20261006/logs/ye2026_sepsis-bulkonly-d0.log ADDED
@@ -0,0 +1 @@
 
 
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+ {"dataset": "ye2026_sepsis", "draw": 0, "cells": 183000, "samples": 122, "seconds": 38.8, "labels_l1": {"T cell": 98947, "Monocyte": 31455, "B cell": 25955, "NK cell": 18115, "Other": 7583, "DC": 945}}