Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/scratch_n5/checkpoint_ft.pt.moved

@@ -0,0 +1,6 @@
+{
+ "moved_to": "spark-0110",
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/scratch_n5/checkpoint_ft.pt",
+ "sha256": "11665f81339df56bbcdd85ab6bd5c0d032f66df8d320bd56c20db98b7c384427",
+ "at": "2026-10-05T15:36:36.594008"
+}

paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fold0_scratch_20261005/arms/scratch_n5__raw/deg_top50_lists.csv

@@ -0,0 +1,261 @@
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+DC,generated,1,ENSG00000179639

paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fold0_scratch_20261005/arms/scratch_n5__raw/generated_cells.parquet

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+size 230164

paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fold0_scratch_20261005/arms/scratch_n5__raw/predict_scanvi.log

@@ -0,0 +1,84 @@
+INFO     File                                                                   
+         /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/pla
+         ns/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_mo
+         del/model.pt already downloaded                                        
+INFO     File                                                                   
+         /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/pla
+         ns/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_mo
+         del/model.pt already downloaded                                        
+INFO     Found 100.0% reference vars in query data.                             
+INFO     File                                                                   
+         /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/pla
+         ns/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_mo
+         del/model.pt already downloaded                                        
+{
+  "method": "scratch_n5__raw",
+  "n_cells": 25500,
+  "n_genes": 1005,
+  "label_counts": {
+    "celltype_l1_pred": {
+      "T cell": 13611,
+      "Monocyte": 6241,
+      "B cell": 2910,
+      "NK cell": 2046,
+      "Other": 644,
+      "DC": 48
+    },
+    "aifi_l1": {
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+      "NK cell": 2046,
+      "Platelet": 449,
+      "Erythrocyte": 152,
+      "DC": 48,
+      "ILC": 28,
+      "Progenitor cell": 15
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+    "aifi_l2": {
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+      "CD14 monocyte": 4075,
+      "Memory CD8 T cell": 2591,
+      "Naive CD4 T cell": 1965,
+      "gdT": 1858,
+      "CD56dim NK cell": 1742,
+      "CD16 monocyte": 1680,
+      "Naive B cell": 1070,
+      "Naive CD8 T cell": 868,
+      "Treg": 732,
+      "Effector B cell": 676,
+      "Memory B cell": 632,
+      "Intermediate monocyte": 486,
+      "Platelet": 449,
+      "Transitional B cell": 376,
+      "CD8aa": 331,
+      "DN T cell": 278,
+      "CD56bright NK cell": 158,
+      "Plasma cell": 156,
+      "Erythrocyte": 152,
+      "Proliferating NK cell": 146,
+      "Proliferating T cell": 135,
+      "MAIT": 109,
+      "cDC2": 36,
+      "ILC": 28,
+      "Progenitor cell": 15,
+      "pDC": 6,
+      "cDC1": 5,
+      "ASDC": 1
+    }
+  },
+  "confidence": {
+    "mean_l2_max_prob": 0.9442637594838937,
+    "mean_l1_mass": 0.98914635181427,
+    "frac_l2_max_prob_ge_0.5": 0.9855294117647059
+  },
+  "timings_s": {
+    "predict": 0.2,
+    "total": 0.5
+  },
+  "subset": false
+}
+-> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fold0_scratch_20261005/arms/scratch_n5__raw/labels/labels.parquet
+
+--- stderr ---
+Seed set to 20260916