Archive 4 checkpoints (1-4)
Browse files- paper-releases/20260928/diffusion/data/cohorts/immicro/fewshot_n5/DRAWS.json +148 -0
- paper-releases/20260928/diffusion/data/cohorts/immicro/fewshot_n5/draw0/alpha.npy +3 -0
- paper-releases/20260928/diffusion/data/cohorts/immicro/fewshot_n5/draw0/test_samples.txt +102 -0
- paper-releases/20260928/diffusion/data/cohorts/immicro/fewshot_n5/draw0/train_donors.txt +5 -0
paper-releases/20260928/diffusion/data/cohorts/immicro/fewshot_n5/DRAWS.json
ADDED
|
@@ -0,0 +1,148 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "immicro",
|
| 3 |
+
"n": 5,
|
| 4 |
+
"draws": 5,
|
| 5 |
+
"seed": 20260928,
|
| 6 |
+
"strata_regex": "",
|
| 7 |
+
"n_usable_rows": 107,
|
| 8 |
+
"n_usable_donors": 107,
|
| 9 |
+
"stratum_sizes": {
|
| 10 |
+
"True": 107
|
| 11 |
+
},
|
| 12 |
+
"files": {
|
| 13 |
+
"all_usable_raw.npz": "2be5717d19e86bdf38e4838d4bd2886a211ba78bfbfe749c458305a3e0ac2dcc",
|
| 14 |
+
"all_usable_pseudo.npz": "99d3ff321a9146e6d88eead9a4b6545099aa6a88b65b17096e7d267daf557734",
|
| 15 |
+
"draw0/test_raw.npz": "25588c979cd104e1b950542b66e04b0b1fdc51aea688691c6402f35011b93062",
|
| 16 |
+
"draw0/test_cal.npz": "328505d70a98f891048921270dac87fd6ad5d4e18094683672f4139e05a3bb27",
|
| 17 |
+
"draw1/test_raw.npz": "01e7e8584abb7828ddc920db70138da255c985ff855e1ab7a1eea1ae119d52fc",
|
| 18 |
+
"draw1/test_cal.npz": "99d7e11f6827b2a8ad00fd7d5b9c6feba589acbd0084248eabe26d61c2f78495",
|
| 19 |
+
"draw2/test_raw.npz": "508da4e48400f0569416a6fa204680f8fadccdec466c7e5543c8951ba7c30094",
|
| 20 |
+
"draw2/test_cal.npz": "8ceef01e3c3a5e3927a2df946e90a4a43617781ebbb920bda755ade0180c561b",
|
| 21 |
+
"draw3/test_raw.npz": "f4e1e15e2e6270128e1d3a1441dd92ac0d24c7df8971b28decddf6add7e6e82e",
|
| 22 |
+
"draw3/test_cal.npz": "a64073b438c88c8be4dceb52f8ef48e5215c9696595bb2dd863051b4c92d7e02",
|
| 23 |
+
"draw4/test_raw.npz": "e864e90de96eaf6cec21e14dda14021922f00e4c7033786a422b6707ce5808f9",
|
| 24 |
+
"draw4/test_cal.npz": "2d360be455b08ac429d0112af50b7738d3ac0b2e589749686d39ff24e186b735"
|
| 25 |
+
},
|
| 26 |
+
"draw": {
|
| 27 |
+
"0": {
|
| 28 |
+
"train_donors": [
|
| 29 |
+
"HS45",
|
| 30 |
+
"HS74",
|
| 31 |
+
"HS27",
|
| 32 |
+
"HS54",
|
| 33 |
+
"HS73"
|
| 34 |
+
],
|
| 35 |
+
"n_train_rows": 5,
|
| 36 |
+
"n_test_rows": 102,
|
| 37 |
+
"allocation": {
|
| 38 |
+
"True": 5
|
| 39 |
+
},
|
| 40 |
+
"test_groups": {
|
| 41 |
+
"DB1": 16,
|
| 42 |
+
"DB6": 16,
|
| 43 |
+
"DB5": 15,
|
| 44 |
+
"DB2": 14,
|
| 45 |
+
"DB3": 14,
|
| 46 |
+
"DB4": 14,
|
| 47 |
+
"DB7": 13
|
| 48 |
+
},
|
| 49 |
+
"alpha_genes_estimated": 10699
|
| 50 |
+
},
|
| 51 |
+
"1": {
|
| 52 |
+
"train_donors": [
|
| 53 |
+
"HS77",
|
| 54 |
+
"HS13",
|
| 55 |
+
"HS70",
|
| 56 |
+
"HS58",
|
| 57 |
+
"HS16"
|
| 58 |
+
],
|
| 59 |
+
"n_train_rows": 5,
|
| 60 |
+
"n_test_rows": 102,
|
| 61 |
+
"allocation": {
|
| 62 |
+
"True": 5
|
| 63 |
+
},
|
| 64 |
+
"test_groups": {
|
| 65 |
+
"DB1": 16,
|
| 66 |
+
"DB6": 16,
|
| 67 |
+
"DB2": 15,
|
| 68 |
+
"DB3": 15,
|
| 69 |
+
"DB5": 15,
|
| 70 |
+
"DB7": 13,
|
| 71 |
+
"DB4": 12
|
| 72 |
+
},
|
| 73 |
+
"alpha_genes_estimated": 10790
|
| 74 |
+
},
|
| 75 |
+
"2": {
|
| 76 |
+
"train_donors": [
|
| 77 |
+
"HS55",
|
| 78 |
+
"HS48",
|
| 79 |
+
"HS91",
|
| 80 |
+
"HS25",
|
| 81 |
+
"HS44"
|
| 82 |
+
],
|
| 83 |
+
"n_train_rows": 5,
|
| 84 |
+
"n_test_rows": 102,
|
| 85 |
+
"allocation": {
|
| 86 |
+
"True": 5
|
| 87 |
+
},
|
| 88 |
+
"test_groups": {
|
| 89 |
+
"DB2": 16,
|
| 90 |
+
"DB1": 15,
|
| 91 |
+
"DB3": 15,
|
| 92 |
+
"DB4": 14,
|
| 93 |
+
"DB6": 14,
|
| 94 |
+
"DB5": 14,
|
| 95 |
+
"DB7": 14
|
| 96 |
+
},
|
| 97 |
+
"alpha_genes_estimated": 10826
|
| 98 |
+
},
|
| 99 |
+
"3": {
|
| 100 |
+
"train_donors": [
|
| 101 |
+
"HS91",
|
| 102 |
+
"HS88",
|
| 103 |
+
"HS84",
|
| 104 |
+
"HS34",
|
| 105 |
+
"HS105"
|
| 106 |
+
],
|
| 107 |
+
"n_train_rows": 5,
|
| 108 |
+
"n_test_rows": 102,
|
| 109 |
+
"allocation": {
|
| 110 |
+
"True": 5
|
| 111 |
+
},
|
| 112 |
+
"test_groups": {
|
| 113 |
+
"DB1": 16,
|
| 114 |
+
"DB2": 16,
|
| 115 |
+
"DB6": 15,
|
| 116 |
+
"DB5": 15,
|
| 117 |
+
"DB7": 14,
|
| 118 |
+
"DB3": 13,
|
| 119 |
+
"DB4": 13
|
| 120 |
+
},
|
| 121 |
+
"alpha_genes_estimated": 10767
|
| 122 |
+
},
|
| 123 |
+
"4": {
|
| 124 |
+
"train_donors": [
|
| 125 |
+
"HS19",
|
| 126 |
+
"HS76",
|
| 127 |
+
"HS25",
|
| 128 |
+
"HS52",
|
| 129 |
+
"HS84"
|
| 130 |
+
],
|
| 131 |
+
"n_train_rows": 5,
|
| 132 |
+
"n_test_rows": 102,
|
| 133 |
+
"allocation": {
|
| 134 |
+
"True": 5
|
| 135 |
+
},
|
| 136 |
+
"test_groups": {
|
| 137 |
+
"DB2": 16,
|
| 138 |
+
"DB6": 15,
|
| 139 |
+
"DB5": 15,
|
| 140 |
+
"DB1": 14,
|
| 141 |
+
"DB3": 14,
|
| 142 |
+
"DB4": 14,
|
| 143 |
+
"DB7": 14
|
| 144 |
+
},
|
| 145 |
+
"alpha_genes_estimated": 10781
|
| 146 |
+
}
|
| 147 |
+
}
|
| 148 |
+
}
|
paper-releases/20260928/diffusion/data/cohorts/immicro/fewshot_n5/draw0/alpha.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5c554c280b7c3a47ffad0f47c2aa39d5d1ab6d7334d895b47acd2153810fd590
|
| 3 |
+
size 160904
|
paper-releases/20260928/diffusion/data/cohorts/immicro/fewshot_n5/draw0/test_samples.txt
ADDED
|
@@ -0,0 +1,102 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
HS1
|
| 2 |
+
HS2
|
| 3 |
+
HS3
|
| 4 |
+
HS4
|
| 5 |
+
HS6
|
| 6 |
+
HS7
|
| 7 |
+
HS8
|
| 8 |
+
HS9
|
| 9 |
+
HS10
|
| 10 |
+
HS11
|
| 11 |
+
HS12
|
| 12 |
+
HS13
|
| 13 |
+
HS14
|
| 14 |
+
HS15
|
| 15 |
+
HS16
|
| 16 |
+
HS17
|
| 17 |
+
HS18
|
| 18 |
+
HS19
|
| 19 |
+
HS20
|
| 20 |
+
HS21
|
| 21 |
+
HS23
|
| 22 |
+
HS24
|
| 23 |
+
HS25
|
| 24 |
+
HS26
|
| 25 |
+
HS28
|
| 26 |
+
HS29
|
| 27 |
+
HS30
|
| 28 |
+
HS31
|
| 29 |
+
HS32
|
| 30 |
+
HS34
|
| 31 |
+
HS35
|
| 32 |
+
HS36
|
| 33 |
+
HS37
|
| 34 |
+
HS38
|
| 35 |
+
HS39
|
| 36 |
+
HS40
|
| 37 |
+
HS41
|
| 38 |
+
HS42
|
| 39 |
+
HS43
|
| 40 |
+
HS44
|
| 41 |
+
HS46
|
| 42 |
+
HS47
|
| 43 |
+
HS48
|
| 44 |
+
HS49
|
| 45 |
+
HS50
|
| 46 |
+
HS51
|
| 47 |
+
HS52
|
| 48 |
+
HS53
|
| 49 |
+
HS55
|
| 50 |
+
HS56
|
| 51 |
+
HS57
|
| 52 |
+
HS58
|
| 53 |
+
HS59
|
| 54 |
+
HS60
|
| 55 |
+
HS61
|
| 56 |
+
HS62
|
| 57 |
+
HS63
|
| 58 |
+
HS64
|
| 59 |
+
HS65
|
| 60 |
+
HS66
|
| 61 |
+
HS67
|
| 62 |
+
HS68
|
| 63 |
+
HS69
|
| 64 |
+
HS70
|
| 65 |
+
HS71
|
| 66 |
+
HS72
|
| 67 |
+
HS75
|
| 68 |
+
HS76
|
| 69 |
+
HS77
|
| 70 |
+
HS78
|
| 71 |
+
HS79
|
| 72 |
+
HS80
|
| 73 |
+
HS81
|
| 74 |
+
HS82
|
| 75 |
+
HS83
|
| 76 |
+
HS84
|
| 77 |
+
HS85
|
| 78 |
+
HS86
|
| 79 |
+
HS87
|
| 80 |
+
HS88
|
| 81 |
+
HS89
|
| 82 |
+
HS90
|
| 83 |
+
HS91
|
| 84 |
+
HS92
|
| 85 |
+
HS93
|
| 86 |
+
HS94
|
| 87 |
+
HS95
|
| 88 |
+
HS96
|
| 89 |
+
HS97
|
| 90 |
+
HS98
|
| 91 |
+
HS100
|
| 92 |
+
HS101
|
| 93 |
+
HS102
|
| 94 |
+
HS103
|
| 95 |
+
HS104
|
| 96 |
+
HS105
|
| 97 |
+
HS106
|
| 98 |
+
HS107
|
| 99 |
+
HS108
|
| 100 |
+
HS109
|
| 101 |
+
HS110
|
| 102 |
+
HS111
|
paper-releases/20260928/diffusion/data/cohorts/immicro/fewshot_n5/draw0/train_donors.txt
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
HS45
|
| 2 |
+
HS74
|
| 3 |
+
HS27
|
| 4 |
+
HS54
|
| 5 |
+
HS73
|