Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s04/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+lora3k4_raw_s04,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.21488102066619677,0.1868046066438028,0.8888888888888888,0.7777777777777778,0.0078125,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.18369036087104912,0.06123012029034971,0.09800718944511999,-0.13420727995106915,0.5001802086451842,0.07368411007760184,0.3560779312547917
+lora3k4_raw_s04,BD,ifng_response_log2fc_high_vs_other,-0.9913760628373846,-1.0298820089983025,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.42133242057986586,0.14044414019328863,0.4167155105636773,-1.8121167403274918,-0.35218889964636296,-1.3152408308883017,-0.6675112947864674
+lora3k4_raw_s04,BD,ifng_response_c1q_high_minus_other,0.07971371493810782,0.08419073237655261,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.025270497262239202,0.008423499087413067,0.043928935766190697,0.04587029510560353,0.1139530215965529,0.06028909120964477,0.09913833866657087
+lora3k4_raw_s04,BD,proinflammatory_log2fc_bgcorr_high_vs_other,0.07412035690955177,0.07218737986558037,0.6666666666666666,0.3333333333333333,0.0546875,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.08640361255187663,0.028801204183958876,0.1340709132382894,-0.0176367051029427,0.24947899027910678,0.007704660962483081,0.14053605285662046
+lora3k4_raw_s04,BD,proinflammatory_log2fc_high_vs_other,-0.7934221572522896,-0.8406944188678731,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.1716380927988861,0.057212697599628694,0.21516877717036986,-1.0500589565120795,-0.5218043278043537,-0.9253548745032188,-0.6614894400013603
+lora3k4_raw_s04,BD,proinflammatory_c1q_high_minus_other,0.01323605905351053,0.014916222540032942,0.8888888888888888,0.7777777777777778,0.01953125,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.011603999095515514,0.0038679996985051712,0.020062466402509666,-0.006061724908697219,0.02740252669366247,0.004316435753789139,0.022155682353231922
+lora3k4_raw_s04,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.3285407317506593,0.31497692250155174,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.13672068647317087,0.045573562157723624,0.2122028502579247,0.17519621808538985,0.5686638722045676,0.22344790895896452,0.4336335545423541
+lora3k4_raw_s04,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.6770589583686629,-0.6992433319703213,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.2194362851436359,0.07314542838121196,0.30503200944158315,-0.9865586759720677,-0.35313993270522565,-0.8457326186870179,-0.508385298050308
+lora3k4_raw_s04,BD,phagocytosis_antigen_c1q_high_minus_other,0.11834656424864073,0.1217926348636621,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.0240534983544328,0.008017832784810932,0.03513232023015872,0.08186795047241119,0.16119430881986435,0.09985740869149119,0.1368357198057903
+lora3k4_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.1202992146276196,1.1553868889547518,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.1899782680549351,0.06332608935164503,0.31792013905130256,0.832494373538892,1.372796177410488,0.9742689907164177,1.2663294385388215
+lora3k4_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.4393952358312085,0.4361205542947316,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.21934190983148874,0.07311396994382958,0.2687318041988568,0.102043012884778,0.8303252175805914,0.2707941187995444,0.6079963528628726
+lora3k4_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6746786718734549,0.6915568807050285,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.10115103638305528,0.033717012127685096,0.10838058151904706,0.546012438919361,0.8664770738595753,0.596927102480284,0.7524302412666257
+lora3k4_raw_s04,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.2090259884467195,0.08767853926294267,0.6666666666666666,0.3333333333333333,0.1640625,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.29360884584509667,0.0978696152816989,0.5143257651175839,-0.1788287123223825,0.6070025393526252,-0.01666174910371898,0.43471372599715796
+lora3k4_raw_s04,HC,ifng_response_log2fc_high_vs_other,-1.9080697559378887,-1.889155030996764,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.7360850482125351,0.2453616827375117,1.3799869505964515,-2.9723377391304857,-1.0565801257523377,-2.4738748109512434,-1.342264700924534
+lora3k4_raw_s04,HC,ifng_response_c1q_high_minus_other,0.09108589427521248,0.09339781727507462,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.03869868356365368,0.012899561187884559,0.05706212192272542,0.02739401574190109,0.14743796963042266,0.06133945283363153,0.12083233571679343
+lora3k4_raw_s04,HC,proinflammatory_log2fc_bgcorr_high_vs_other,0.18749321577376438,0.14252027325110994,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.17947273031756053,0.059824243439186846,0.18095148267907646,0.02038798661628866,0.529803088316189,0.04953826301753883,0.3254481685299899
+lora3k4_raw_s04,HC,proinflammatory_log2fc_high_vs_other,-1.1853779928752104,-1.2813282132601145,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.4219745340297421,0.14065817800991404,0.6288025296410461,-1.8158347522812082,-0.6198473477371327,-1.5097363330163558,-0.861019652734065
+lora3k4_raw_s04,HC,proinflammatory_c1q_high_minus_other,0.014048835208216117,0.009210056465556227,0.7777777777777778,0.5555555555555556,0.09765625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.020181506387532057,0.006727168795844019,0.028333782772269694,-0.018191599040029233,0.039247694383710785,-0.0014640438532166188,0.029561714269648855
+lora3k4_raw_s04,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.4751992278706938,0.48526332509475906,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.21670883947592925,0.07223627982530975,0.3802099847866092,0.11365838401252876,0.7189010356099541,0.3086220678817643,0.6417763878596233
+lora3k4_raw_s04,HC,phagocytosis_antigen_log2fc_high_vs_other,-1.2498796349436028,-1.1709644556954206,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.4161683406694932,0.1387227802231644,0.3543557711519203,-2.113462222015032,-0.6129930523862842,-1.5697749397852385,-0.929984330101967
+lora3k4_raw_s04,HC,phagocytosis_antigen_c1q_high_minus_other,0.11672799217810928,0.10963393573929181,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.050755694291935695,0.016918564763978565,0.04845028811260366,0.028339417282887913,0.21616212506060123,0.07771371187065522,0.15574227248556333
+lora3k4_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.8741651964525508,1.6680564883005582,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.43793884828177404,0.14597961609392468,0.643433870398598,1.422845097481774,2.632658799911172,1.5375355980844438,2.2107947948206577
+lora3k4_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.33403453312203174,0.3947376118252878,0.8888888888888888,0.7777777777777778,0.02734375,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.33538179430275217,0.11179393143425072,0.5716085588192148,-0.26309293191439626,0.7437086944765863,0.07623726494391858,0.5918318013001449
+lora3k4_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.8023326688833636,0.7952942337263922,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.09632665744935179,0.0321088858164506,0.03236037219210197,0.6604888741334609,1.0007395163106905,0.7282894454138301,0.8763758923528971

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s04/rule_C/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+lora3k4_raw_s04,BDU1,BD,generated,795,13,0.016352201257861635,0.34170101550135246,0.24372873697181918,0.09797227852953327,0.17884721170196552,0.15962469688404882,0.019222514817916703,0.5612402738418767,0.4280374242881092,0.1332028495537675,0.44297842134650983,-0.007895288124337175,0.31497692250155174,0.917889926261207,-0.7404583999799041,-0.8709814478122699,-0.6992433319703213,0.25874292663710774,1.918823142405273,1.2140759512701058,0.7047471911351673,-0.6545466598991346
+lora3k4_raw_s04,BDU2,BD,generated,606,10,0.0165016501650165,0.305890612003132,0.26002031689752847,0.04587029510560353,0.1547263722451002,0.1607880971537974,-0.006061724908697219,0.5336184328770632,0.45175048240465204,0.08186795047241119,0.16189306624763442,0.07430158582822517,0.17519621808538985,1.281981161049488,-1.1571739105435814,-0.8406944188678731,-0.8660365096706243,0.5319439674010265,1.844678396661875,1.2417159776637463,0.6029624189981286,-0.7113389335968007
+lora3k4_raw_s04,BDU3,BD,generated,866,16,0.018475750577367205,0.3877702854927185,0.2863112208074437,0.10145906468527482,0.2043049870066658,0.17690246031300333,0.02740252669366247,0.5816316226911409,0.44598154501127724,0.13565007767986365,0.5001802086451842,0.12617562511395222,0.35289095808132787,1.1553868889547518,-0.35218889964636296,-0.5218043278043537,-0.3723257382299538,0.8303252175805914,1.9193116252561433,1.2277547445511148,0.6915568807050285,-0.5021545549896905
+lora3k4_raw_s04,BDV1,BD,generated,921,20,0.021715526601520086,0.35093658715087855,0.2909911483646443,0.05994543878623426,0.17974544761556924,0.17719050477083537,0.0025549428447338707,0.5446073687464279,0.4485019140996509,0.096105454646777,0.15939682327003546,-0.014311612436745447,0.22373129261467722,1.0359224176503403,-0.6926424101986057,-0.6982741480349984,-0.5434482646367425,0.6198948414260887,1.8307154199249709,1.2768099924219256,0.5539054275030453,-0.5225790163791079
+lora3k4_raw_s04,BDV2,BD,generated,800,13,0.01625,0.3632266109602658,0.2790358785837132,0.08419073237655261,0.19086428958550355,0.16824688033826002,0.022617409247243536,0.5641683973806185,0.4490163117733994,0.11515208560721912,0.25740401271515545,0.24947899027910678,0.4292398368979632,0.832494373538892,-1.0298820089983025,-0.6561730893850676,-0.658586093962142,0.102043012884778,1.9492006080499844,1.3026468878817847,0.6465537201681997,-0.6983289159991782
+lora3k4_raw_s04,BDV3,BD,generated,798,8,0.010025062656641603,0.37380071296831546,0.25984769137176256,0.1139530215965529,0.1871460007225208,0.16271277757415498,0.024433223148365824,0.5653697381481596,0.44328655087756663,0.12208318727059297,0.22273941712166906,0.05615153040316818,0.20743358784184532,1.2973939219143542,-1.2821726320732176,-0.9782633744634891,-0.9865586759720677,0.35950973878470355,1.9398663402437621,1.1913164451883502,0.7485498950554119,-0.7768535678471756
+lora3k4_raw_s04,BDV4,BD,generated,677,12,0.01772525849335303,0.3602047999743428,0.25874123746350197,0.10146356251084082,0.17133200988778763,0.1564157873477547,0.014916222540032942,0.615509811495007,0.4543155026751427,0.16119430881986435,0.1367399099568489,-0.0176367051029427,0.21703698664003848,1.2247670428708708,-1.1070283567682249,-0.8713418665554374,-0.7657118040925641,0.5423543338353527,2.151359106741171,1.2848820328815955,0.8664770738595753,-0.6537594166004788
+lora3k4_raw_s04,BDV5,BD,generated,938,15,0.015991471215351813,0.33761670758974077,0.28257779565644675,0.05503891193329402,0.20395315692584973,0.19142391114647705,0.012529245779372672,0.5324635558955383,0.4343930265719295,0.09807052932360877,0.1868046066438028,0.07218737986558037,0.46769691088857257,0.9640610219981854,-0.7487212070007705,-0.6532077858350378,-0.35313993270522565,0.4361205542947316,1.7638644834115689,1.2178520444922079,0.546012438919361,-0.5450347177940795
+lora3k4_raw_s04,BDV6,BD,generated,1035,11,0.010628019323671498,0.301384511707429,0.2438543827883449,0.05753012891908413,0.1658993371574795,0.16438916583851554,0.001510171318963971,0.5224418779078712,0.4006492430442091,0.1217926348636621,-0.13420727995106915,0.1286317063599585,0.5686638722045676,1.372796177410488,-1.8121167403274918,-1.0500589565120795,-0.8484802740783256,0.2736225296364959,1.8299184155349877,1.118575415017812,0.7113430005171757,-0.8680394761573808
+lora3k4_raw_s04,HC1,HC,generated,858,2,0.002331002331002331,0.2544720092475271,0.22707799350562602,0.02739401574190109,0.15986107157225765,0.15065101510670142,0.009210056465556227,0.4396049378084277,0.4112655205255398,0.028339417282887913,-0.1788287123223825,0.02038798661628866,0.2481761699964653,2.39420333069833,-2.9723377391304857,-1.8158347522812082,-2.113462222015032,-0.26309293191439626,1.8328654766879824,1.136402959531986,0.6964625171559964,-1.3825899513366287
+lora3k4_raw_s04,HC10,HC,generated,603,7,0.011608623548922056,0.39450908822708486,0.2470711185966622,0.14743796963042266,0.19020787465291103,0.16016015468053532,0.030047719972375708,0.5686069941078333,0.4266300896875776,0.14197690442025573,0.6070025393526252,0.04870538526299111,0.11365838401252876,1.5046421455243169,-1.2311250179318782,-1.0765315517643272,-1.3352848330050542,0.3947376118252878,1.9607406522994906,1.1659084775084354,0.7948321747910552,-0.9387694463871628
+lora3k4_raw_s04,HC2,HC,generated,667,8,0.01199400299850075,0.3468473133127735,0.23993532950181878,0.10691198381095474,0.162090075196175,0.15876909048995316,0.00332098470622183,0.5065238261421485,0.41299720983449645,0.09352661630765208,0.49621141291024673,0.41680005470365,0.48526332509475906,1.6680564883005582,-1.3101789342796348,-0.8270308597770805,-1.0953667590095681,0.4020410648530478,1.815370109449613,1.1548812353161522,0.6604888741334609,-0.9767791179515595
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s04/rule_D/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s04/rule_D/sample.csv

@@ -0,0 +1,20 @@
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