Archive 3 checkpoints (1-3)
Browse files- paper-releases/pbisc-diffusion/updates/20261002T124820Z-crosscohort-liu-default/diffusion/metadata/NOTE.md +5 -0
- paper-releases/pbisc-diffusion/updates/20261002T124820Z-crosscohort-liu-default/diffusion/metadata/inference_locations.json +1353 -0
- paper-releases/pbisc-diffusion/updates/20261002T124820Z-crosscohort-liu-default/diffusion/metadata/request.json +1655 -0
paper-releases/pbisc-diffusion/updates/20261002T124820Z-crosscohort-liu-default/diffusion/metadata/NOTE.md
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# PBISC-diffusion update 20261002T124820Z-crosscohort-liu-default
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Cross-cohort (LOCO) benchmark update 2026-10-02 (plans/paired_crosscohort_20261002): Liu 2021 (GSE161918, PBMC bulk + unsorted PBMC scRNA, 65 pairs / 44 subjects, 58 usable rows) built with the same QC bundle (processing/liu2021_v1_20261002 -> data/liu2021) and added as a training-only cohort to every training pool (user decision; 14 HTO-negative-heavy rows excluded from training); splits hoL_*, conditions, calibration control, new 45-unit queue (registered as planned). The first no-Liu queue was stopped on user request: its 3 finished K=1000 LoRA r16 runs (held out Giroux, Ji, sepsis) and their scores are included as the no-Liu reference, its other units are registered as stopped. Not uploaded: per-cell count arrays (cells_panel6k / cells_full, sha in MANIFEST/BUILD), fine-tuned checkpoints (sha in RUN.json). SCOPE.json: 45 exact Liu processing paths added to the external-dependency allowlist (same roles as the other cohorts' processing files).
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Payload states are recorded as supplied. Inference locations are pointers, not archived generated outputs.
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paper-releases/pbisc-diffusion/updates/20261002T124820Z-crosscohort-liu-default/diffusion/metadata/inference_locations.json
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|
| 409 |
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| 410 |
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| 424 |
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|
| 425 |
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| 426 |
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|
| 427 |
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|
| 439 |
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| 440 |
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| 442 |
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|
| 454 |
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|
| 455 |
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|
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|
| 457 |
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|
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|
| 469 |
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|
| 470 |
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|
| 471 |
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|
| 472 |
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|
| 473 |
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|
| 474 |
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|
| 475 |
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|
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|
| 484 |
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|
| 485 |
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|
| 486 |
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|
| 487 |
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|
| 499 |
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|
| 500 |
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|
| 502 |
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|
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|
| 514 |
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|
| 515 |
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|
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|
| 517 |
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|
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| 528 |
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|
| 529 |
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|
| 530 |
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|
| 531 |
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|
| 532 |
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|
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},
|
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|
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},
|
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{
|
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|
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|
| 543 |
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|
| 544 |
+
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|
| 545 |
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|
| 546 |
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|
| 547 |
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|
| 548 |
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},
|
| 549 |
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|
| 550 |
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},
|
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|
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|
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|
| 558 |
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|
| 559 |
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|
| 560 |
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|
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|
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|
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|
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|
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|
| 574 |
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|
| 575 |
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"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 576 |
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|
| 577 |
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|
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},
|
| 579 |
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|
| 580 |
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|
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|
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|
| 588 |
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|
| 589 |
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|
| 590 |
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|
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|
| 592 |
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|
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|
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|
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|
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|
| 604 |
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|
| 605 |
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|
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|
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|
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|
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|
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{
|
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|
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|
| 618 |
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|
| 619 |
+
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|
| 620 |
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"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 621 |
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|
| 622 |
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|
| 623 |
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},
|
| 624 |
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|
| 625 |
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|
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{
|
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|
| 632 |
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|
| 633 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 634 |
+
"host": "server_1",
|
| 635 |
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"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 636 |
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|
| 637 |
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|
| 638 |
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|
| 639 |
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|
| 640 |
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|
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|
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|
| 648 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 649 |
+
"host": "server_1",
|
| 650 |
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"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 651 |
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|
| 652 |
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|
| 653 |
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|
| 654 |
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|
| 655 |
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|
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|
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{
|
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|
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|
| 663 |
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|
| 664 |
+
"host": "server_1",
|
| 665 |
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"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 666 |
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|
| 667 |
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|
| 668 |
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|
| 669 |
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|
| 670 |
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| 674 |
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|
| 675 |
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{
|
| 676 |
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|
| 677 |
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|
| 678 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 679 |
+
"host": "server_1",
|
| 680 |
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"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 681 |
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|
| 682 |
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|
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},
|
| 684 |
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|
| 685 |
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| 686 |
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| 1246 |
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|
| 1247 |
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|
| 1248 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 1249 |
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"host": "server_1",
|
| 1250 |
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"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1251 |
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"observed_output": {
|
| 1252 |
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"presence": "missing_unverified"
|
| 1253 |
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},
|
| 1254 |
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|
| 1255 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/hoL_immicro/K2000_lora64.npz",
|
| 1256 |
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"sha256_basis": "presence_unverified",
|
| 1257 |
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"sha_basis": "presence_unverified",
|
| 1258 |
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"state": "planned"
|
| 1259 |
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},
|
| 1260 |
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{
|
| 1261 |
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"artifact_role": "inference_output",
|
| 1262 |
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"cohort": "imperial_eskd",
|
| 1263 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 1264 |
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"host": "server_1",
|
| 1265 |
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"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1266 |
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"observed_output": {
|
| 1267 |
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"presence": "missing_unverified"
|
| 1268 |
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},
|
| 1269 |
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"observed_receipt": null,
|
| 1270 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/hoL_imperial_eskd/K2000_lora64.npz",
|
| 1271 |
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"sha256_basis": "presence_unverified",
|
| 1272 |
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"sha_basis": "presence_unverified",
|
| 1273 |
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"state": "planned"
|
| 1274 |
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},
|
| 1275 |
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{
|
| 1276 |
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"artifact_role": "inference_output",
|
| 1277 |
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"cohort": "giroux2022",
|
| 1278 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 1279 |
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"host": "server_1",
|
| 1280 |
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"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1281 |
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"observed_output": {
|
| 1282 |
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"presence": "missing_unverified"
|
| 1283 |
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},
|
| 1284 |
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"observed_receipt": null,
|
| 1285 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/giroux2022/hoL_giroux2022/K2000_full.npz",
|
| 1286 |
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"sha256_basis": "presence_unverified",
|
| 1287 |
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"sha_basis": "presence_unverified",
|
| 1288 |
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"state": "planned"
|
| 1289 |
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},
|
| 1290 |
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{
|
| 1291 |
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"artifact_role": "inference_output",
|
| 1292 |
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"cohort": "ji2025_chili",
|
| 1293 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 1294 |
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"host": "server_1",
|
| 1295 |
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"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1296 |
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"observed_output": {
|
| 1297 |
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"presence": "missing_unverified"
|
| 1298 |
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},
|
| 1299 |
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"observed_receipt": null,
|
| 1300 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ji2025_chili/hoL_ji2025_chili/K2000_full.npz",
|
| 1301 |
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"sha256_basis": "presence_unverified",
|
| 1302 |
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"sha_basis": "presence_unverified",
|
| 1303 |
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"state": "planned"
|
| 1304 |
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|
| 1305 |
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{
|
| 1306 |
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"artifact_role": "inference_output",
|
| 1307 |
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"cohort": "ye2026_sepsis",
|
| 1308 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 1309 |
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"host": "server_1",
|
| 1310 |
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"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1311 |
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"observed_output": {
|
| 1312 |
+
"presence": "missing_unverified"
|
| 1313 |
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},
|
| 1314 |
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"observed_receipt": null,
|
| 1315 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ye2026_sepsis/hoL_ye2026_sepsis/K2000_full.npz",
|
| 1316 |
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"sha256_basis": "presence_unverified",
|
| 1317 |
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"sha_basis": "presence_unverified",
|
| 1318 |
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"state": "planned"
|
| 1319 |
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},
|
| 1320 |
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{
|
| 1321 |
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"artifact_role": "inference_output",
|
| 1322 |
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"cohort": "immicro",
|
| 1323 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 1324 |
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"host": "server_1",
|
| 1325 |
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"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1326 |
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"observed_output": {
|
| 1327 |
+
"presence": "missing_unverified"
|
| 1328 |
+
},
|
| 1329 |
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"observed_receipt": null,
|
| 1330 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/hoL_immicro/K2000_full.npz",
|
| 1331 |
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"sha256_basis": "presence_unverified",
|
| 1332 |
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"sha_basis": "presence_unverified",
|
| 1333 |
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"state": "planned"
|
| 1334 |
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},
|
| 1335 |
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{
|
| 1336 |
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"artifact_role": "inference_output",
|
| 1337 |
+
"cohort": "imperial_eskd",
|
| 1338 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1339 |
+
"host": "server_1",
|
| 1340 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1341 |
+
"observed_output": {
|
| 1342 |
+
"presence": "missing_unverified"
|
| 1343 |
+
},
|
| 1344 |
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"observed_receipt": null,
|
| 1345 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/hoL_imperial_eskd/K2000_full.npz",
|
| 1346 |
+
"sha256_basis": "presence_unverified",
|
| 1347 |
+
"sha_basis": "presence_unverified",
|
| 1348 |
+
"state": "planned"
|
| 1349 |
+
}
|
| 1350 |
+
],
|
| 1351 |
+
"project_id": "pbisc-diffusion",
|
| 1352 |
+
"update_id": "20261002T124820Z-crosscohort-liu-default"
|
| 1353 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261002T124820Z-crosscohort-liu-default/diffusion/metadata/request.json
ADDED
|
@@ -0,0 +1,1655 @@
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| 920 |
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"experiment": "paired_crosscohort_loco_20261002",
|
| 1053 |
+
"host": "server_1",
|
| 1054 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1055 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/ho_immicro/K1000_full.npz",
|
| 1056 |
+
"state": "stopped"
|
| 1057 |
+
},
|
| 1058 |
+
{
|
| 1059 |
+
"artifact_role": "inference_output",
|
| 1060 |
+
"cohort": "imperial_eskd",
|
| 1061 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1062 |
+
"host": "server_1",
|
| 1063 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1064 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/ho_imperial_eskd/K1000_full.npz",
|
| 1065 |
+
"state": "stopped"
|
| 1066 |
+
},
|
| 1067 |
+
{
|
| 1068 |
+
"artifact_role": "inference_output",
|
| 1069 |
+
"cohort": "giroux2022",
|
| 1070 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1071 |
+
"host": "server_1",
|
| 1072 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1073 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/giroux2022/ho_giroux2022/xcal_K2000.npz",
|
| 1074 |
+
"state": "stopped"
|
| 1075 |
+
},
|
| 1076 |
+
{
|
| 1077 |
+
"artifact_role": "inference_output",
|
| 1078 |
+
"cohort": "ji2025_chili",
|
| 1079 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1080 |
+
"host": "server_1",
|
| 1081 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1082 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ji2025_chili/ho_ji2025_chili/xcal_K2000.npz",
|
| 1083 |
+
"state": "stopped"
|
| 1084 |
+
},
|
| 1085 |
+
{
|
| 1086 |
+
"artifact_role": "inference_output",
|
| 1087 |
+
"cohort": "ye2026_sepsis",
|
| 1088 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1089 |
+
"host": "server_1",
|
| 1090 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1091 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ye2026_sepsis/ho_ye2026_sepsis/xcal_K2000.npz",
|
| 1092 |
+
"state": "stopped"
|
| 1093 |
+
},
|
| 1094 |
+
{
|
| 1095 |
+
"artifact_role": "inference_output",
|
| 1096 |
+
"cohort": "immicro",
|
| 1097 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1098 |
+
"host": "server_1",
|
| 1099 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1100 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/ho_immicro/xcal_K2000.npz",
|
| 1101 |
+
"state": "stopped"
|
| 1102 |
+
},
|
| 1103 |
+
{
|
| 1104 |
+
"artifact_role": "inference_output",
|
| 1105 |
+
"cohort": "imperial_eskd",
|
| 1106 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1107 |
+
"host": "server_1",
|
| 1108 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1109 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/ho_imperial_eskd/xcal_K2000.npz",
|
| 1110 |
+
"state": "stopped"
|
| 1111 |
+
},
|
| 1112 |
+
{
|
| 1113 |
+
"artifact_role": "inference_output",
|
| 1114 |
+
"cohort": "giroux2022",
|
| 1115 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1116 |
+
"host": "server_1",
|
| 1117 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1118 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/giroux2022/ho_giroux2022/K2000_lora16.npz",
|
| 1119 |
+
"state": "stopped"
|
| 1120 |
+
},
|
| 1121 |
+
{
|
| 1122 |
+
"artifact_role": "inference_output",
|
| 1123 |
+
"cohort": "ji2025_chili",
|
| 1124 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1125 |
+
"host": "server_1",
|
| 1126 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1127 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ji2025_chili/ho_ji2025_chili/K2000_lora16.npz",
|
| 1128 |
+
"state": "stopped"
|
| 1129 |
+
},
|
| 1130 |
+
{
|
| 1131 |
+
"artifact_role": "inference_output",
|
| 1132 |
+
"cohort": "ye2026_sepsis",
|
| 1133 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1134 |
+
"host": "server_1",
|
| 1135 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1136 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ye2026_sepsis/ho_ye2026_sepsis/K2000_lora16.npz",
|
| 1137 |
+
"state": "stopped"
|
| 1138 |
+
},
|
| 1139 |
+
{
|
| 1140 |
+
"artifact_role": "inference_output",
|
| 1141 |
+
"cohort": "immicro",
|
| 1142 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1143 |
+
"host": "server_1",
|
| 1144 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1145 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/ho_immicro/K2000_lora16.npz",
|
| 1146 |
+
"state": "stopped"
|
| 1147 |
+
},
|
| 1148 |
+
{
|
| 1149 |
+
"artifact_role": "inference_output",
|
| 1150 |
+
"cohort": "imperial_eskd",
|
| 1151 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1152 |
+
"host": "server_1",
|
| 1153 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1154 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/ho_imperial_eskd/K2000_lora16.npz",
|
| 1155 |
+
"state": "stopped"
|
| 1156 |
+
},
|
| 1157 |
+
{
|
| 1158 |
+
"artifact_role": "inference_output",
|
| 1159 |
+
"cohort": "giroux2022",
|
| 1160 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1161 |
+
"host": "server_1",
|
| 1162 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1163 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/giroux2022/ho_giroux2022/K2000_lora64.npz",
|
| 1164 |
+
"state": "stopped"
|
| 1165 |
+
},
|
| 1166 |
+
{
|
| 1167 |
+
"artifact_role": "inference_output",
|
| 1168 |
+
"cohort": "ji2025_chili",
|
| 1169 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1170 |
+
"host": "server_1",
|
| 1171 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1172 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ji2025_chili/ho_ji2025_chili/K2000_lora64.npz",
|
| 1173 |
+
"state": "stopped"
|
| 1174 |
+
},
|
| 1175 |
+
{
|
| 1176 |
+
"artifact_role": "inference_output",
|
| 1177 |
+
"cohort": "ye2026_sepsis",
|
| 1178 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1179 |
+
"host": "server_1",
|
| 1180 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1181 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ye2026_sepsis/ho_ye2026_sepsis/K2000_lora64.npz",
|
| 1182 |
+
"state": "stopped"
|
| 1183 |
+
},
|
| 1184 |
+
{
|
| 1185 |
+
"artifact_role": "inference_output",
|
| 1186 |
+
"cohort": "immicro",
|
| 1187 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1188 |
+
"host": "server_1",
|
| 1189 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1190 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/ho_immicro/K2000_lora64.npz",
|
| 1191 |
+
"state": "stopped"
|
| 1192 |
+
},
|
| 1193 |
+
{
|
| 1194 |
+
"artifact_role": "inference_output",
|
| 1195 |
+
"cohort": "imperial_eskd",
|
| 1196 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1197 |
+
"host": "server_1",
|
| 1198 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1199 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/ho_imperial_eskd/K2000_lora64.npz",
|
| 1200 |
+
"state": "stopped"
|
| 1201 |
+
},
|
| 1202 |
+
{
|
| 1203 |
+
"artifact_role": "inference_output",
|
| 1204 |
+
"cohort": "giroux2022",
|
| 1205 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1206 |
+
"host": "server_1",
|
| 1207 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1208 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/giroux2022/ho_giroux2022/K2000_full.npz",
|
| 1209 |
+
"state": "stopped"
|
| 1210 |
+
},
|
| 1211 |
+
{
|
| 1212 |
+
"artifact_role": "inference_output",
|
| 1213 |
+
"cohort": "ji2025_chili",
|
| 1214 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1215 |
+
"host": "server_1",
|
| 1216 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1217 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ji2025_chili/ho_ji2025_chili/K2000_full.npz",
|
| 1218 |
+
"state": "stopped"
|
| 1219 |
+
},
|
| 1220 |
+
{
|
| 1221 |
+
"artifact_role": "inference_output",
|
| 1222 |
+
"cohort": "ye2026_sepsis",
|
| 1223 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1224 |
+
"host": "server_1",
|
| 1225 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1226 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ye2026_sepsis/ho_ye2026_sepsis/K2000_full.npz",
|
| 1227 |
+
"state": "stopped"
|
| 1228 |
+
},
|
| 1229 |
+
{
|
| 1230 |
+
"artifact_role": "inference_output",
|
| 1231 |
+
"cohort": "immicro",
|
| 1232 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1233 |
+
"host": "server_1",
|
| 1234 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1235 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/ho_immicro/K2000_full.npz",
|
| 1236 |
+
"state": "stopped"
|
| 1237 |
+
},
|
| 1238 |
+
{
|
| 1239 |
+
"artifact_role": "inference_output",
|
| 1240 |
+
"cohort": "imperial_eskd",
|
| 1241 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1242 |
+
"host": "server_1",
|
| 1243 |
+
"note": "first (no-Liu) queue stopped on user request 2026-10-02 21:30 before this unit finished; superseded by the Liu-default queue (splits hoL_*); not run",
|
| 1244 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/ho_imperial_eskd/K2000_full.npz",
|
| 1245 |
+
"state": "stopped"
|
| 1246 |
+
},
|
| 1247 |
+
{
|
| 1248 |
+
"artifact_role": "inference_output",
|
| 1249 |
+
"cohort": "giroux2022",
|
| 1250 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1251 |
+
"host": "server_1",
|
| 1252 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1253 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/giroux2022/hoL_giroux2022/K1000_lora16.npz",
|
| 1254 |
+
"state": "planned"
|
| 1255 |
+
},
|
| 1256 |
+
{
|
| 1257 |
+
"artifact_role": "inference_output",
|
| 1258 |
+
"cohort": "ji2025_chili",
|
| 1259 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1260 |
+
"host": "server_1",
|
| 1261 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1262 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ji2025_chili/hoL_ji2025_chili/K1000_lora16.npz",
|
| 1263 |
+
"state": "planned"
|
| 1264 |
+
},
|
| 1265 |
+
{
|
| 1266 |
+
"artifact_role": "inference_output",
|
| 1267 |
+
"cohort": "ye2026_sepsis",
|
| 1268 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1269 |
+
"host": "server_1",
|
| 1270 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1271 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ye2026_sepsis/hoL_ye2026_sepsis/K1000_lora16.npz",
|
| 1272 |
+
"state": "planned"
|
| 1273 |
+
},
|
| 1274 |
+
{
|
| 1275 |
+
"artifact_role": "inference_output",
|
| 1276 |
+
"cohort": "immicro",
|
| 1277 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1278 |
+
"host": "server_1",
|
| 1279 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1280 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/hoL_immicro/K1000_lora16.npz",
|
| 1281 |
+
"state": "planned"
|
| 1282 |
+
},
|
| 1283 |
+
{
|
| 1284 |
+
"artifact_role": "inference_output",
|
| 1285 |
+
"cohort": "imperial_eskd",
|
| 1286 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1287 |
+
"host": "server_1",
|
| 1288 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1289 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/hoL_imperial_eskd/K1000_lora16.npz",
|
| 1290 |
+
"state": "planned"
|
| 1291 |
+
},
|
| 1292 |
+
{
|
| 1293 |
+
"artifact_role": "inference_output",
|
| 1294 |
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| 1537 |
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"cohort": "ye2026_sepsis",
|
| 1538 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1539 |
+
"host": "server_1",
|
| 1540 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1541 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ye2026_sepsis/hoL_ye2026_sepsis/K2000_lora16.npz",
|
| 1542 |
+
"state": "planned"
|
| 1543 |
+
},
|
| 1544 |
+
{
|
| 1545 |
+
"artifact_role": "inference_output",
|
| 1546 |
+
"cohort": "immicro",
|
| 1547 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1548 |
+
"host": "server_1",
|
| 1549 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1550 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/hoL_immicro/K2000_lora16.npz",
|
| 1551 |
+
"state": "planned"
|
| 1552 |
+
},
|
| 1553 |
+
{
|
| 1554 |
+
"artifact_role": "inference_output",
|
| 1555 |
+
"cohort": "imperial_eskd",
|
| 1556 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1557 |
+
"host": "server_1",
|
| 1558 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1559 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/hoL_imperial_eskd/K2000_lora16.npz",
|
| 1560 |
+
"state": "planned"
|
| 1561 |
+
},
|
| 1562 |
+
{
|
| 1563 |
+
"artifact_role": "inference_output",
|
| 1564 |
+
"cohort": "giroux2022",
|
| 1565 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1566 |
+
"host": "server_1",
|
| 1567 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1568 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/giroux2022/hoL_giroux2022/K2000_lora64.npz",
|
| 1569 |
+
"state": "planned"
|
| 1570 |
+
},
|
| 1571 |
+
{
|
| 1572 |
+
"artifact_role": "inference_output",
|
| 1573 |
+
"cohort": "ji2025_chili",
|
| 1574 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1575 |
+
"host": "server_1",
|
| 1576 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1577 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ji2025_chili/hoL_ji2025_chili/K2000_lora64.npz",
|
| 1578 |
+
"state": "planned"
|
| 1579 |
+
},
|
| 1580 |
+
{
|
| 1581 |
+
"artifact_role": "inference_output",
|
| 1582 |
+
"cohort": "ye2026_sepsis",
|
| 1583 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1584 |
+
"host": "server_1",
|
| 1585 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1586 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ye2026_sepsis/hoL_ye2026_sepsis/K2000_lora64.npz",
|
| 1587 |
+
"state": "planned"
|
| 1588 |
+
},
|
| 1589 |
+
{
|
| 1590 |
+
"artifact_role": "inference_output",
|
| 1591 |
+
"cohort": "immicro",
|
| 1592 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1593 |
+
"host": "server_1",
|
| 1594 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1595 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/hoL_immicro/K2000_lora64.npz",
|
| 1596 |
+
"state": "planned"
|
| 1597 |
+
},
|
| 1598 |
+
{
|
| 1599 |
+
"artifact_role": "inference_output",
|
| 1600 |
+
"cohort": "imperial_eskd",
|
| 1601 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1602 |
+
"host": "server_1",
|
| 1603 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1604 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/hoL_imperial_eskd/K2000_lora64.npz",
|
| 1605 |
+
"state": "planned"
|
| 1606 |
+
},
|
| 1607 |
+
{
|
| 1608 |
+
"artifact_role": "inference_output",
|
| 1609 |
+
"cohort": "giroux2022",
|
| 1610 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1611 |
+
"host": "server_1",
|
| 1612 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1613 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/giroux2022/hoL_giroux2022/K2000_full.npz",
|
| 1614 |
+
"state": "planned"
|
| 1615 |
+
},
|
| 1616 |
+
{
|
| 1617 |
+
"artifact_role": "inference_output",
|
| 1618 |
+
"cohort": "ji2025_chili",
|
| 1619 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1620 |
+
"host": "server_1",
|
| 1621 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1622 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ji2025_chili/hoL_ji2025_chili/K2000_full.npz",
|
| 1623 |
+
"state": "planned"
|
| 1624 |
+
},
|
| 1625 |
+
{
|
| 1626 |
+
"artifact_role": "inference_output",
|
| 1627 |
+
"cohort": "ye2026_sepsis",
|
| 1628 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1629 |
+
"host": "server_1",
|
| 1630 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1631 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/ye2026_sepsis/hoL_ye2026_sepsis/K2000_full.npz",
|
| 1632 |
+
"state": "planned"
|
| 1633 |
+
},
|
| 1634 |
+
{
|
| 1635 |
+
"artifact_role": "inference_output",
|
| 1636 |
+
"cohort": "immicro",
|
| 1637 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1638 |
+
"host": "server_1",
|
| 1639 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1640 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/immicro/hoL_immicro/K2000_full.npz",
|
| 1641 |
+
"state": "planned"
|
| 1642 |
+
},
|
| 1643 |
+
{
|
| 1644 |
+
"artifact_role": "inference_output",
|
| 1645 |
+
"cohort": "imperial_eskd",
|
| 1646 |
+
"experiment": "paired_crosscohort_loco_20261002",
|
| 1647 |
+
"host": "server_1",
|
| 1648 |
+
"note": "Liu-default queue (loco_liu_20261002.txt) queued or running on server_1 / server_2 at request time; server_2 outputs are copied back to this path",
|
| 1649 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/generated/imperial_eskd/hoL_imperial_eskd/K2000_full.npz",
|
| 1650 |
+
"state": "planned"
|
| 1651 |
+
}
|
| 1652 |
+
],
|
| 1653 |
+
"project_id": "pbisc-diffusion",
|
| 1654 |
+
"summary": "Cross-cohort (LOCO) benchmark update 2026-10-02 (plans/paired_crosscohort_20261002): Liu 2021 (GSE161918, PBMC bulk + unsorted PBMC scRNA, 65 pairs / 44 subjects, 58 usable rows) built with the same QC bundle (processing/liu2021_v1_20261002 -> data/liu2021) and added as a training-only cohort to every training pool (user decision; 14 HTO-negative-heavy rows excluded from training); splits hoL_*, conditions, calibration control, new 45-unit queue (registered as planned). The first no-Liu queue was stopped on user request: its 3 finished K=1000 LoRA r16 runs (held out Giroux, Ji, sepsis) and their scores are included as the no-Liu reference, its other units are registered as stopped. Not uploaded: per-cell count arrays (cells_panel6k / cells_full, sha in MANIFEST/BUILD), fine-tuned checkpoints (sha in RUN.json). SCOPE.json: 45 exact Liu processing paths added to the external-dependency allowlist (same roles as the other cohorts' processing files)."
|
| 1655 |
+
}
|