Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_meta.csv

@@ -0,0 +1,165 @@
+sample_id,donor_id,group,sex,calc_age,ethnicity,WHO_severity,WHO_temp_severity,fatal_disease,time_from_first_symptoms,time_from_first_positive_swab,day_label,wave,waves,diabetes,cause_eskd,ihd,copd,smoking,bulk_sex_call,sex_flag,donor_trained_draw0,donor_trained_draw1,donor_trained_draw2,donor_trained_draw3,donor_trained_draw4
+C10_positive_18,C10,covid_positive,F,84,black,severe,moderate,False,18.0,18.0,18.0,w1,w1,yes.T2,DN (bx or presumed),yes.no.intervention,no,not.current,female,False,False,False,False,False,False
+C10_positive_21,C10,covid_positive,F,84,black,severe,moderate,False,21.0,21.0,21.0,w1,w1,yes.T2,DN (bx or presumed),yes.no.intervention,no,not.current,female,False,False,False,False,False,False
+C10_positive_30,C10,covid_positive,F,84,black,severe,mild,False,30.0,30.0,30.0,w1,w1,yes.T2,DN (bx or presumed),yes.no.intervention,no,not.current,female,False,False,False,False,False,False
+C101_positive_6,C101,covid_positive,M,61,asian,severe,severe,True,2.0,6.0,6.0,w2,w2,yes.T2,DN (bx or presumed),yes.cabg,no,not.current,male,False,False,True,True,False,False
+C101_positive_14,C101,covid_positive,M,61,asian,severe,severe,True,10.0,14.0,14.0,w2,w2,yes.T2,DN (bx or presumed),yes.cabg,no,not.current,male,False,False,True,True,False,False
+C101_negative,C101,covid_negative,M,61,asian,,NEGATIVE,,,,,w1,w1|w2,yes.T2,DN (bx or presumed),yes.cabg,no,not.current,male,False,False,True,True,False,False
+C105_negative,C105,covid_negative,F,75,asian,,NEGATIVE,False,-4.0,-7.0,,w1,w1,yes.T2,DN (bx or presumed),yes.stent,yes,not.current,female,False,False,False,False,False,False
+C108_positive_7,C108,covid_positive,F,79,white,severe,moderate,True,5.0,7.0,7.0,w2,w2,no,GN/Autoimmune,no,bi,not.current,female,False,False,False,False,True,False
+C108_positive_12,C108,covid_positive,F,79,white,severe,severe,True,10.0,12.0,12.0,w2,w2,no,GN/Autoimmune,no,bi,not.current,female,False,False,False,False,True,False
+C108_positive_16,C108,covid_positive,F,79,white,severe,severe,True,14.0,16.0,16.0,w2,w2,no,GN/Autoimmune,no,bi,not.current,female,False,False,False,False,True,False
+C11_positive_13,C11,covid_positive,M,62,white,severe,moderate,False,,13.0,13.0,w1,w1,yes.T2,GN/Autoimmune,no,no,not.current,male,False,False,False,False,False,False
+C11_positive_17,C11,covid_positive,M,62,white,severe,moderate,False,,17.0,17.0,w1,w1,yes.T2,GN/Autoimmune,no,no,not.current,male,False,False,False,False,False,False
+C11_positive_19,C11,covid_positive,M,62,white,severe,moderate,False,,19.0,19.0,w1,w1,yes.T2,GN/Autoimmune,no,no,not.current,male,False,False,False,False,False,False
+C11_positive_21,C11,covid_positive,M,62,white,severe,mild,False,,21.0,21.0,w1,w1,yes.T2,GN/Autoimmune,no,no,not.current,male,False,False,False,False,False,False
+C110_positive_11,C110,covid_positive,M,74,black,moderate,mild,False,11.0,11.0,11.0,w1,w1,no,Unknown,no,no,never,male,False,False,False,False,False,False
+C110_positive_14,C110,covid_positive,M,74,black,moderate,mild,False,14.0,14.0,14.0,w1,w1,no,Unknown,no,no,never,male,False,False,False,False,False,False
+C110_positive_2,C110,covid_positive,M,74,black,moderate,moderate,False,2.0,2.0,2.0,w1,w1,no,Unknown,no,no,never,male,False,False,False,False,False,False
+C110_positive_4,C110,covid_positive,M,74,black,moderate,moderate,False,4.0,4.0,4.0,w1,w1,no,Unknown,no,no,never,male,False,False,False,False,False,False
+C113_positive_27,C113,covid_positive,F,61,white,severe,mild,False,27.0,25.0,27.0,w1,w1,yes.T2,DN (bx or presumed),no,no,not.current,female,False,False,False,False,False,False
+C114_positive_13,C114,covid_positive,M,68,asian,severe,moderate,False,13.0,12.0,13.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C114_positive_16,C114,covid_positive,M,68,asian,severe,moderate,False,16.0,15.0,16.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C114_positive_24,C114,covid_positive,M,68,asian,severe,mild,False,24.0,23.0,24.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C114_positive_27,C114,covid_positive,M,68,asian,severe,mild,False,27.0,26.0,27.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C114_positive_31,C114,covid_positive,M,68,asian,severe,mild,False,31.0,30.0,31.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C114_positive_5,C114,covid_positive,M,68,asian,severe,moderate,False,5.0,4.0,5.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C114_positive_9,C114,covid_positive,M,68,asian,severe,severe,False,9.0,8.0,9.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C116_positive_16,C116,covid_positive,M,87,white,critical,moderate,False,16.0,15.0,16.0,w1,w1,no,GN/Autoimmune,yes.no.intervention,no,not.current,male,False,False,False,False,False,False
+C116_positive_26,C116,covid_positive,M,87,white,critical,moderate,False,26.0,25.0,26.0,w1,w1,no,GN/Autoimmune,yes.no.intervention,no,not.current,male,False,False,False,False,False,False
+C12_positive_11,C12,covid_positive,M,58,asian,severe,severe,False,11.0,8.0,11.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C12_positive_17,C12,covid_positive,M,58,asian,severe,moderate,False,17.0,14.0,17.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C12_positive_19,C12,covid_positive,M,58,asian,severe,mild,False,19.0,16.0,19.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C12_positive_22,C12,covid_positive,M,58,asian,severe,mild,False,22.0,19.0,22.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C12_positive_24,C12,covid_positive,M,58,asian,severe,mild,False,24.0,21.0,24.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C123_positive_25,C123,covid_positive,M,66,asian,severe,moderate,False,25.0,22.0,25.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C123_positive_35,C123,covid_positive,M,66,asian,severe,mild,False,35.0,32.0,35.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C123_positive_10,C123,covid_positive,M,66,asian,severe,severe,False,10.0,7.0,10.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C126_positive_9,C126,covid_positive,M,64,asian,mild,mild,False,9.0,9.0,9.0,w1,w1,no,Unknown,no,no,never,male,False,True,False,False,False,False
+C126_positive_11,C126,covid_positive,M,64,asian,mild,mild,False,11.0,11.0,11.0,w1,w1,no,Unknown,no,no,never,male,False,True,False,False,False,False
+C126_positive_5,C126,covid_positive,M,64,asian,mild,mild,False,5.0,5.0,5.0,w1,w1,no,Unknown,no,no,never,male,False,True,False,False,False,False
+C127_positive_11,C127,covid_positive,F,69,other,moderate,moderate,False,11.0,8.0,11.0,w1,w1,yes.T2,DN (bx or presumed),yes.cabg,no,never,female,False,False,False,False,False,False
+C127_positive_16,C127,covid_positive,F,69,other,moderate,moderate,False,16.0,13.0,16.0,w1,w1,yes.T2,DN (bx or presumed),yes.cabg,no,never,female,False,False,False,False,False,False
+C127_positive_23,C127,covid_positive,F,69,other,moderate,mild,False,23.0,20.0,23.0,w1,w1,yes.T2,DN (bx or presumed),yes.cabg,no,never,female,False,False,False,False,False,False
+C128_positive_16,C128,covid_positive,M,72,asian,mild,mild,False,16.0,13.0,16.0,w1,w1,yes.T2,DN (bx or presumed),unknown,no,not.current,male,False,False,False,False,False,False
+C128_positive_23,C128,covid_positive,M,72,asian,mild,mild,False,23.0,20.0,23.0,w1,w1,yes.T2,DN (bx or presumed),unknown,no,not.current,male,False,False,False,False,False,False
+C129_positive_13,C129,covid_positive,M,77,other,mild,mild,False,13.0,12.0,13.0,w1,w1,yes.T2,Other,yes.no.intervention,no,not.current,male,False,False,False,False,False,False
+C129_positive_3,C129,covid_positive,M,77,other,mild,mild,False,3.0,2.0,3.0,w1,w1,yes.T2,Other,yes.no.intervention,no,not.current,male,False,False,False,False,False,False
+C129_positive_6,C129,covid_positive,M,77,other,mild,mild,False,6.0,5.0,6.0,w1,w1,yes.T2,Other,yes.no.intervention,no,not.current,male,False,False,False,False,False,False
+C129_positive_8,C129,covid_positive,M,77,other,mild,mild,False,8.0,7.0,8.0,w1,w1,yes.T2,Other,yes.no.intervention,no,not.current,male,False,False,False,False,False,False
+C130_negative,C130,covid_negative,M,71,other,,NEGATIVE,,,,,w1,w1,no,Unknown,no,yes,not.current,male,False,False,False,False,False,False
+C132_positive_12,C132,covid_positive,F,77,asian,moderate,mild,False,12.0,11.0,12.0,w1,w1,yes.T2,DN (bx or presumed),yes.cabg,no,not.current,female,False,False,False,False,False,False
+C132_positive_14,C132,covid_positive,F,77,asian,moderate,mild,False,14.0,13.0,14.0,w1,w1,yes.T2,DN (bx or presumed),yes.cabg,no,not.current,female,False,False,False,False,False,False
+C132_positive_8,C132,covid_positive,F,77,asian,moderate,moderate,False,8.0,7.0,8.0,w1,w1,yes.T2,DN (bx or presumed),yes.cabg,no,not.current,female,False,False,False,False,False,False
+C105_positive_5,C105,covid_positive,F,75,asian,mild,mild,False,5.0,2.0,5.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,yes,not.current,female,False,False,False,False,False,False
+C105_positive_8,C105,covid_positive,F,75,asian,mild,mild,False,8.0,5.0,8.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,yes,not.current,female,False,False,False,False,False,False
+C105_positive_10,C105,covid_positive,F,75,asian,mild,mild,False,10.0,7.0,10.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,yes,not.current,female,False,False,False,False,False,False
+C105_positive_15,C105,covid_positive,F,75,asian,mild,mild,False,15.0,12.0,15.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,yes,not.current,female,False,False,False,False,False,False
+C105_positive_17,C105,covid_positive,F,75,asian,mild,mild,False,17.0,14.0,17.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,yes,not.current,female,False,False,False,False,False,False
+C105_positive_3,C105,covid_positive,F,75,asian,mild,mild,False,3.0,0.0,3.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,yes,not.current,female,False,False,False,False,False,False
+C137_positive_2,C137,covid_positive,F,60,asian,mild,mild,False,-5.0,2.0,2.0,w2,w2,yes.T2,DN (bx or presumed),no,no,not.current,ambiguous,True,False,False,False,False,True
+C137_positive_9,C137,covid_positive,F,60,asian,mild,mild,False,2.0,9.0,9.0,w2,w2,yes.T2,DN (bx or presumed),no,no,not.current,female,False,False,False,False,False,True
+C137_positive_12,C137,covid_positive,F,60,asian,mild,mild,False,5.0,12.0,12.0,w2,w2,yes.T2,DN (bx or presumed),no,no,not.current,female,False,False,False,False,False,True
+C137_positive_16,C137,covid_positive,F,60,asian,mild,mild,False,9.0,16.0,16.0,w2,w2,yes.T2,DN (bx or presumed),no,no,not.current,female,False,False,False,False,False,True
+C138_recovery,C138,recovery,F,77,asian,moderate,,False,42.0,47.0,,w2,w2,yes.T2,DN (bx or presumed),no,no,not.current,female,False,False,False,False,False,False
+C139_recovery,C139,recovery,M,85,white,severe,,False,55.0,54.0,,w2,w2,no,Unknown,no,no,not.current,male,False,False,False,False,False,False
+C141_negative,C141,covid_negative,M,85,black,,NEGATIVE,,,,,w1,w1|w2,no,Unknown,yes.stent,no,not.current,male,False,True,False,False,False,False
+C145_positive_11,C145,covid_positive,F,65,asian,severe,moderate,True,11.0,11.0,11.0,w2,w2,yes.T2,DN (bx or presumed),no,no,not.current,female,False,False,False,False,False,False
+C147_positive_8,C147,covid_positive,M,53,asian,critical,severe,True,6.0,8.0,8.0,w2,w2,yes.T2,DN (bx or presumed),yes.stent,no,unknown,male,False,False,False,False,False,False
+C149_positive_14,C149,covid_positive,M,76,white,mild,mild,False,14.0,14.0,14.0,w1,w1,no,Other,no,no,not.current,male,False,False,False,False,False,False
+C149_positive_3,C149,covid_positive,M,76,white,mild,mild,False,3.0,3.0,3.0,w1,w1,no,Other,no,no,not.current,male,False,False,False,False,False,False
+C153_negative,C153,covid_negative,M,50,asian,,NEGATIVE,,,,,w1,w1,yes.T2,DN (bx or presumed),no,no,not.current,male,False,False,False,False,False,False
+C162_negative,C162,covid_negative,M,62,white,,NEGATIVE,,,,,w1,w1,no,DN (bx or presumed),no,no,not.current,male,False,False,False,False,False,False
+C163_negative,C163,covid_negative,M,69,asian,,NEGATIVE,,,,,w1,w1,no,GN/Autoimmune,no,no,not.current,male,False,False,False,False,False,False
+C166_negative,C166,covid_negative,M,78,white,,NEGATIVE,,,,,w1,w1,no,Other,no,no,not.current,male,False,False,False,False,False,False
+C168_positive_12,C168,covid_positive,M,75,asian,mild,mild,False,,12.0,12.0,w2,w2,yes.T2,DN (bx or presumed),no,no,not.current,male,False,False,False,False,False,False
+C169_positive_12,C169,covid_positive,F,73,asian,mild,mild,False,,12.0,12.0,w2,w2,no,Unknown,yes.no.intervention,no,not.current,female,False,False,False,False,False,False
+C173_negative,C173,covid_negative,M,56,black,,NEGATIVE,,,,,w1,w1,no,GN/Autoimmune,no,no,not.current,male,False,False,False,False,False,False
+C18_positive_14,C18,covid_positive,M,64,asian,severe,moderate,False,9.0,14.0,14.0,w1,w1,no,Unknown,no,no,not.current,male,False,False,False,False,False,False
+C18_positive_15,C18,covid_positive,M,64,asian,severe,moderate,False,10.0,15.0,15.0,w1,w1,no,Unknown,no,no,not.current,male,False,False,False,False,False,False
+C18_positive_17,C18,covid_positive,M,64,asian,severe,mild,False,12.0,17.0,17.0,w1,w1,no,Unknown,no,no,not.current,male,False,False,False,False,False,False
+C18_positive_19,C18,covid_positive,M,64,asian,severe,mild,False,14.0,19.0,19.0,w1,w1,no,Unknown,no,no,not.current,male,False,False,False,False,False,False
+C180_negative,C180,covid_negative,M,48,asian,,NEGATIVE,,,,,w1,w1,no,GN/Autoimmune,yes.cabg,no,not.current,male,False,False,False,False,False,False
+C187_positive_9,C187,covid_positive,M,70,other,mild,mild,False,5.0,9.0,9.0,w2,w2,yes.T2,DN (bx or presumed),no,copd,not.current,male,False,False,False,True,False,False
+C189_negative,C189,covid_negative,M,55,black,,NEGATIVE,,,,,w1,w1,no,HTN/vascular,no,no,ex,male,False,False,False,False,False,False
+C20_positive_16,C20,covid_positive,M,62,asian,severe,mild,False,16.0,15.0,16.0,w1,w1,yes.T2,DN (bx or presumed),yes.stent,no,not.current,male,False,False,False,False,False,False
+C201_negative,C201,covid_negative,M,56,black,,NEGATIVE,,,,,w1,w1,no,HTN/vascular,no,no,not.current,male,False,False,False,False,False,False
+C21_positive_26,C21,covid_positive,M,80,white,critical,critical,True,26.0,25.0,26.0,w1,w1,no,Other,yes.stent,no,not.current,male,False,False,False,False,False,False
+C21_positive_10,C21,covid_positive,M,80,white,critical,severe,True,10.0,9.0,10.0,w1,w1,no,Other,yes.stent,no,not.current,male,False,False,False,False,False,False
+C21_positive_16,C21,covid_positive,M,80,white,critical,critical,True,16.0,15.0,16.0,w1,w1,no,Other,yes.stent,no,not.current,male,False,False,False,False,False,False
+C22_positive_8,C22,covid_positive,M,65,asian,mild,mild,False,8.0,8.0,8.0,w1,w1,yes.T2,DN (bx or presumed),yes.no.intervention,no,not.current,male,False,False,False,False,False,False
+C22_positive_11,C22,covid_positive,M,65,asian,mild,mild,False,11.0,11.0,11.0,w1,w1,yes.T2,DN (bx or presumed),yes.no.intervention,no,not.current,male,False,False,False,False,False,False
+C22_positive_13,C22,covid_positive,M,65,asian,mild,mild,False,13.0,13.0,13.0,w1,w1,yes.T2,DN (bx or presumed),yes.no.intervention,no,not.current,male,False,False,False,False,False,False
+C24_positive_8,C24,covid_positive,F,75,white,mild,mild,False,,8.0,8.0,w1,w1,no,HTN/vascular,yes.no.intervention,no,not.current,female,False,False,False,False,False,False
+C24_positive_11,C24,covid_positive,F,75,white,mild,mild,False,,11.0,11.0,w1,w1,no,HTN/vascular,yes.no.intervention,no,not.current,female,False,False,False,False,False,False
+C24_positive_13,C24,covid_positive,F,75,white,mild,mild,False,,13.0,13.0,w1,w1,no,HTN/vascular,yes.no.intervention,no,not.current,female,False,False,False,False,False,False
+C241_negative,C241,covid_negative,M,65,black,,NEGATIVE,,,,,w1,w1,no,HTN/vascular,no,no,not.current,male,False,False,False,False,False,False
+C242_negative,C242,covid_negative,M,59,other,,NEGATIVE,,,,,w1,w1,no,GN/Autoimmune,no,no,not.current,male,False,False,False,False,False,False
+C245_negative,C245,covid_negative,M,62,asian,,NEGATIVE,,,,,w1,w1,no,HTN/vascular,no,no,not.current,male,False,False,False,False,False,False
+C25_positive_14,C25,covid_positive,M,38,black,moderate,mild,False,14.0,14.0,14.0,w1,w1,yes.T1,DN,no,no,unknown,male,False,False,False,False,False,False
+C25_positive_16,C25,covid_positive,M,38,black,moderate,mild,False,16.0,16.0,16.0,w1,w1,yes.T1,DN,no,no,unknown,male,False,False,False,False,False,False
+C25_positive_18,C25,covid_positive,M,38,black,moderate,mild,False,18.0,18.0,18.0,w1,w1,yes.T1,DN,no,no,unknown,male,False,False,False,False,False,False
+C257_negative,C257,covid_negative,F,68,asian,,NEGATIVE,,,,,w1,w1,no,HTN/vascular,no,no,not.current,female,False,False,False,False,False,False
+C27_positive_6,C27,covid_positive,M,85,asian,mild,mild,False,6.0,5.0,6.0,w1,w1,no,HTN/vascular,no,no,never,male,False,False,False,False,False,False
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paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000.PARTS.json

@@ -0,0 +1,122 @@
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paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw0_test_raw_K4000.PARTS.json

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paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw1_test_raw_K4000.PARTS.json

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