Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/data/behcet/BUILD.json

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+{
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+ "rows": 19,
+ "paired_rows": [
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+  "BDV5",
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+ ],
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+  {
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+   "sc_gsm": "GSM5953769",
+   "bulk_sample": "BDV5",
+   "bulk_gsm": "GSM5951806",
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+   "bulk_gsm": "GSM5951807",
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+ ],
+ "pairs_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_pair_recovery_20261004/out/pairs_recovered.csv",
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+  "BDV5": 3508,
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+ "sc_common_genes": 19293,
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+ "recipe_k": 1000,
+ "depth_anchor": 3869.603120208939,
+ "cells_per_bulk": 5000,
+ "alpha_genes_estimated": 10961,
+ "inputs": {
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+  "prepare_dataset": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/prepare_dataset.py",
+  "prepare_dataset_sha256": "36384262b23cf6260eff645812911c1a44f791ca8e4182765d91f2aabb3ccaef"
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+ "retained_cells_rule": "flag_conservative_review_pass (genes>=200 & UMIs>=500 & mito<=20%)",
+ "files": {
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+  "conditions_cal_fixed.npz": "0992aa40efcb74cb2a4940f152698081ca7191a2e281485d6a4d3c4a0d84d5fb",
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+  "cells_panel6k.npz": "a549628d8e0a3e0eef13e07cc7013e41b0395df337796881502f0f27982f6cf9",
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+ "code_sha256": "88a983d2a26609591000d9b66e9cef45f169e3437f0b4d41a70192b632281b99"
+}

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/data/behcet/cells_obs.parquet

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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/data/behcet/train_donors.txt

@@ -0,0 +1,3 @@
+BDV4
+BDV5
+BDV6

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/runs/lora3/RUN.json

@@ -0,0 +1,87 @@
+{
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+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/data/behcet",
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/data/behcet/conditions_raw_fixed.npz",
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+   "down_blocks.3.input_projection",
+   "down_blocks.3.context_projection.1",
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+   "up_blocks.0.context_projection.1",
+   "up_blocks.1.input_projection",
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+   "up_blocks.2.context_projection.1",
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+ "lr": 0.0005,
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+ "ema_decay": 0.999,
+ "max_steps": 3000,
+ "steps_run": 3000,
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+ "patience": 8,
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+ "train_donors_file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/data/behcet/train_donors.txt",
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+ "selected_step": 3000,
+ "selected_inner_val_loss": NaN,
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+ "train_rows": [
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+ "test_rows_never_loaded_for_training": [
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+}