Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/scores/imperial_eskd/draw0/contrast.csv

@@ -0,0 +1,27 @@
+arm,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,n_case_donors_obs,n_control_donors_obs,n_case_donors_gen,n_control_donors_gen,n_cells_obs,n_cells_gen,deg_scored,top50_overlap,top50_jaccard,obs_top_list_size,gen_top_list_size,n_sig_obs,n_sig_gen,top50_overlap_broadcast,top50_jaccard_broadcast,broadcast_top_list_size,n_sig_broadcast
+lora5,T cell,mean_cp10k,3037,0.8142843730190665,0.6380552424293308,0.7490324574410632,0.486427497945546,102,31,102,31,230847,111117,,,,,,,,,,,
+lora5,T cell,pseudobulk_log1p_cpm,3037,0.7327554158013161,0.6369550836029715,0.6272764026100071,0.487569541352058,102,31,102,31,230847,111117,,,,,,,,,,,
+lora5,B cell,mean_cp10k,3192,0.7163325618485334,0.6193771360577306,0.6109321680898723,0.4751469693871862,102,31,102,31,45466,13503,,,,,,,,,,,
+lora5,B cell,pseudobulk_log1p_cpm,3192,0.3875559223967441,0.481685993632798,0.29336911549704575,0.29452193321718906,102,31,102,31,45466,13503,,,,,,,,,,,
+lora5,Monocyte,mean_cp10k,2882,0.810939856544121,0.7641972589048694,0.606179659708118,0.6916694944805181,101,31,102,31,68170,35769,,,,,,,,,,,
+lora5,Monocyte,pseudobulk_log1p_cpm,2882,0.7011881389239699,0.7195560908581415,0.4497933892161478,0.6414574939804643,101,31,102,31,68170,35769,,,,,,,,,,,
+lora5,NK cell,mean_cp10k,2972,0.7780336720217669,0.6484527334122577,0.6628434444741691,0.5498942738445963,102,31,102,31,64913,27792,,,,,,,,,,,
+lora5,NK cell,pseudobulk_log1p_cpm,2972,0.5883932268437426,0.5900041444062439,0.4254769721072644,0.48956730947562954,102,31,102,31,64913,27792,,,,,,,,,,,
+lora5,T cell,welch_top50_deg,5927,,,,,102,31,102,31,230847,111117,True,32,0.47058823529411764,50,50,1029,1837,14,0.16279069767441862,50,2247
+lora5,B cell,welch_top50_deg,5927,,,,,102,31,102,31,45466,13503,True,22,0.28205128205128205,50,50,306,659,11,0.12359550561797752,50,2247
+lora5,Monocyte,welch_top50_deg,5927,,,,,101,31,102,31,68170,35769,True,24,0.3157894736842105,50,50,778,839,21,0.26582278481012656,50,2247
+lora5,NK cell,welch_top50_deg,5927,,,,,102,31,102,31,64913,27792,True,22,0.28205128205128205,50,50,411,917,13,0.14942528735632185,50,2247
+lora5,DC,welch_top50_deg,5927,,,,,102,31,102,31,11578,5506,True,16,0.19047619047619047,50,50,489,333,12,0.13636363636363635,50,2247
+lora5_k4000,T cell,mean_cp10k,3037,0.8167249557412583,0.6380552424293308,0.7630304410441084,0.4646541249652605,102,31,102,31,230847,109056,,,,,,,,,,,
+lora5_k4000,T cell,pseudobulk_log1p_cpm,3037,0.7319036341429888,0.6369550836029715,0.6376178380876345,0.4664639502578582,102,31,102,31,230847,109056,,,,,,,,,,,
+lora5_k4000,B cell,mean_cp10k,3192,0.7226741798643261,0.6193771360577306,0.613193292027124,0.4886253824852201,102,31,102,31,45466,14139,,,,,,,,,,,
+lora5_k4000,B cell,pseudobulk_log1p_cpm,3192,0.4000500613180229,0.481685993632798,0.2950260202104733,0.3224396294363045,102,31,102,31,45466,14139,,,,,,,,,,,
+lora5_k4000,Monocyte,mean_cp10k,2882,0.8076279810825882,0.7641972589048694,0.6136516263839175,0.6744297562653132,101,31,102,31,68170,36189,,,,,,,,,,,
+lora5_k4000,Monocyte,pseudobulk_log1p_cpm,2882,0.707142900351508,0.7195560908581415,0.4722405128746476,0.6281195407633348,101,31,102,31,68170,36189,,,,,,,,,,,
+lora5_k4000,NK cell,mean_cp10k,2972,0.7814719173667777,0.6484527334122577,0.6695689448420253,0.5472257881581536,102,31,102,31,64913,28451,,,,,,,,,,,
+lora5_k4000,NK cell,pseudobulk_log1p_cpm,2972,0.5657378999161756,0.5900041444062439,0.4025514966827503,0.47372923746811924,102,31,102,31,64913,28451,,,,,,,,,,,
+lora5_k4000,T cell,welch_top50_deg,5927,,,,,102,31,102,31,230847,109056,True,33,0.4925373134328358,50,50,1029,1858,14,0.16279069767441862,50,2247
+lora5_k4000,B cell,welch_top50_deg,5927,,,,,102,31,102,31,45466,14139,True,23,0.2987012987012987,50,50,306,658,11,0.12359550561797752,50,2247
+lora5_k4000,Monocyte,welch_top50_deg,5927,,,,,101,31,102,31,68170,36189,True,27,0.3698630136986301,50,50,778,790,21,0.26582278481012656,50,2247
+lora5_k4000,NK cell,welch_top50_deg,5927,,,,,102,31,102,31,64913,28451,True,21,0.26582278481012656,50,50,411,917,13,0.14942528735632185,50,2247
+lora5_k4000,DC,welch_top50_deg,5927,,,,,102,31,102,31,11578,5897,True,18,0.21951219512195122,50,50,489,293,12,0.13636363636363635,50,2247

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/scores/imperial_eskd/draw0/summary.json

@@ -0,0 +1,1288 @@
+{
+ "schema": "paired_ft_scores.v1",
+ "dataset": "imperial_eskd",
+ "written_utc": "2026-10-06T01:38:56.954672+00:00",
+ "command": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+  "--dataset",
+  "imperial_eskd",
+  "--out",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/scores/imperial_eskd/draw0",
+  "--threads",
+  "6",
+  "--donors",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/fewshot_n5/draw0/test_samples.txt",
+  "--case-groups",
+  "covid_positive",
+  "--control-groups",
+  "covid_negative",
+  "--arm",
+  "lora5=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/ref_k1000/imperial_eskd/draw0/lora__raw.npz",
+  "--arm",
+  "lora5_k4000=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/paired_test_K4000.npz"
+ ],
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+ },
+ "code_sha256": {
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+ },
+ "seconds": 93.2
+}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/scores/imperial_eskd/draw1/contrast.csv

@@ -0,0 +1,27 @@
+arm,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,n_case_donors_obs,n_control_donors_obs,n_case_donors_gen,n_control_donors_gen,n_cells_obs,n_cells_gen,deg_scored,top50_overlap,top50_jaccard,obs_top_list_size,gen_top_list_size,n_sig_obs,n_sig_gen,top50_overlap_broadcast,top50_jaccard_broadcast,broadcast_top_list_size,n_sig_broadcast
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+lora5,DC,welch_top50_deg,5927,,,,,102,32,102,32,12644,6688,True,20,0.25,50,50,242,169,15,0.17647058823529413,50,1949
+lora5_k4000,T cell,mean_cp10k,3031,0.8389627774390673,0.6393101171199623,0.7718725859479431,0.5183772459724714,102,32,102,32,239681,121823,,,,,,,,,,,
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+lora5_k4000,B cell,mean_cp10k,3188,0.6818466522887147,0.6236351264700181,0.5405683543895207,0.5108267880656961,102,32,102,32,44946,23926,,,,,,,,,,,
+lora5_k4000,B cell,pseudobulk_log1p_cpm,3188,0.46159231284221924,0.4862172069397853,0.2937439651597999,0.4887962778334763,102,32,102,32,44946,23926,,,,,,,,,,,
+lora5_k4000,Monocyte,mean_cp10k,2883,0.7334089459284993,0.7132449085093915,0.4986930373984236,0.6601696415919864,101,32,102,32,76538,31593,,,,,,,,,,,
+lora5_k4000,Monocyte,pseudobulk_log1p_cpm,2883,0.6259636039125287,0.7072577030580933,0.37454140101812977,0.5801090087459164,101,32,102,32,76538,31593,,,,,,,,,,,
+lora5_k4000,NK cell,mean_cp10k,2966,0.7672816070209326,0.6685247181490744,0.6270001605580359,0.5790702467380723,102,32,102,32,68326,14082,,,,,,,,,,,
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+lora5_k4000,T cell,welch_top50_deg,5927,,,,,102,32,102,32,239681,121823,True,36,0.5625,50,50,827,1287,17,0.20481927710843373,50,1949
+lora5_k4000,B cell,welch_top50_deg,5927,,,,,102,32,102,32,44946,23926,True,18,0.21951219512195122,50,50,255,543,13,0.14942528735632185,50,1949
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