Hugging Face's logo

Datasets:
junidude14
/
PBISC-data

Modalities:
Tabular
Text
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
single-cell-rna-seq
bulk-rna-seq
diffusion
Libraries:
Datasets
pandas
Polars
Dataset card Data Studio Files
xet
 Community
1
junidude14 commited on
Commit
8776c2a
·
verified ·
1 Parent(s): 9b56b8a

Archive 4 checkpoints (1-4)

Browse files
Files changed (4) hide show
  1. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/cv4/SPLIT.json +196 -0
  2. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/cv4/state_types.tsv +30 -0
  3. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/cv4_full/SPLIT.json +196 -0
  4. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/cv4_full/state_types.tsv +30 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/cv4/SPLIT.json ADDED
@@ -0,0 +1,196 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "imperial_eskd",
3
+ "kind": "cv",
4
+ "idx": 4,
5
+ "reference": [
6
+ "C21_1004",
7
+ "C21_1704",
8
+ "C21_2504",
9
+ "C23_2204",
10
+ "C34_1404",
11
+ "C34_2104",
12
+ "C34_2504",
13
+ "C42_1504",
14
+ "C42_2204",
15
+ "C42_2704",
16
+ "C60_2504",
17
+ "C63_1704",
18
+ "C63_2404",
19
+ "C63_2904",
20
+ "C65_1704",
21
+ "C65_2104",
22
+ "C65_2504",
23
+ "C85_2004",
24
+ "C101_0601",
25
+ "C101_1101",
26
+ "C101_1301",
27
+ "C101_1801",
28
+ "C101_2001",
29
+ "C101_2502",
30
+ "C104_2204",
31
+ "C106_2204",
32
+ "C108_2204",
33
+ "C108_1501",
34
+ "C108_1801",
35
+ "C108_2201",
36
+ "C113_0605",
37
+ "C123_2404",
38
+ "C123_2904",
39
+ "C123_0505",
40
+ "C124_2404",
41
+ "C124_2704",
42
+ "C124_0105",
43
+ "C126_2504",
44
+ "C126_3004",
45
+ "C126_0605",
46
+ "C127_2504",
47
+ "C127_0405",
48
+ "C127_1105",
49
+ "C128_2504",
50
+ "C128_0405",
51
+ "C128_1105",
52
+ "C132_2804",
53
+ "C132_0205",
54
+ "C132_1105",
55
+ "C137_3004",
56
+ "C137_2502",
57
+ "C138_3004",
58
+ "C138_2301",
59
+ "C138_3001",
60
+ "C138_0202",
61
+ "C138_0402",
62
+ "C140_3004",
63
+ "C140_2801",
64
+ "C140_3001",
65
+ "C140_0202",
66
+ "C140_0402",
67
+ "C140_0602",
68
+ "C140_0902",
69
+ "C140_1103",
70
+ "C141_2001",
71
+ "C141_2201",
72
+ "C141_3001",
73
+ "C141_0202",
74
+ "C146_3004",
75
+ "C146_1201",
76
+ "C146_1401",
77
+ "C146_1601",
78
+ "C146_1901",
79
+ "C146_2301",
80
+ "C146_2701",
81
+ "C146_2502",
82
+ "C147_3004",
83
+ "C147_1401",
84
+ "C147_1901",
85
+ "C152_0405",
86
+ "C161_1105",
87
+ "C164_1105",
88
+ "C167_1205",
89
+ "C168_1205",
90
+ "C168_2001",
91
+ "C168_2301",
92
+ "C168_3001",
93
+ "C168_0202",
94
+ "C168_0403",
95
+ "C170_1205",
96
+ "C170_2301",
97
+ "C170_0202",
98
+ "C170_0402",
99
+ "C170_0403",
100
+ "C190_2605",
101
+ "C190_2901",
102
+ "C190_0102",
103
+ "C190_0302",
104
+ "C190_0502",
105
+ "C190_0802",
106
+ "C190_1002",
107
+ "C190_0903",
108
+ "C193_2605",
109
+ "C195_2605",
110
+ "C197_2605",
111
+ "C212_2705",
112
+ "C237_2805",
113
+ "C238_2905",
114
+ "C240_2905",
115
+ "C246_2905",
116
+ "C251_2905",
117
+ "C31_1304",
118
+ "C31_2004",
119
+ "C31_2704",
120
+ "C33_1401",
121
+ "C33_1601",
122
+ "C33_1901",
123
+ "C69_1804",
124
+ "C103_2204",
125
+ "C145_3004",
126
+ "C145_0701",
127
+ "C145_1201",
128
+ "C145_1401",
129
+ "C145_1901",
130
+ "C145_2301"
131
+ ],
132
+ "mixture": [
133
+ "C20_1004",
134
+ "C20_1404",
135
+ "C36_1504",
136
+ "C36_1704",
137
+ "C36_2104",
138
+ "C40_1504",
139
+ "C40_2204",
140
+ "C40_0105",
141
+ "C58_1604",
142
+ "C58_2501",
143
+ "C58_2901",
144
+ "C58_0102",
145
+ "C58_0402",
146
+ "C58_1003",
147
+ "C82_2504",
148
+ "C93_2104",
149
+ "C93_2704",
150
+ "C93_0405",
151
+ "C142_3004",
152
+ "C169_1205",
153
+ "C169_2001",
154
+ "C169_2301",
155
+ "C169_0202",
156
+ "C169_0403",
157
+ "C187_2605",
158
+ "C187_1201",
159
+ "C187_1401",
160
+ "C187_1901",
161
+ "C187_2301",
162
+ "C187_2502",
163
+ "C214_2705",
164
+ "C234_2805"
165
+ ],
166
+ "run_json_check": true,
167
+ "n_train_rows": 111,
168
+ "n_inner_val_rows": 14,
169
+ "n_reference_samples": 125,
170
+ "n_mixture_samples": 32,
171
+ "reference_cells": 387329,
172
+ "states": 29,
173
+ "states_merged_minor": 0,
174
+ "types": [
175
+ "B cell",
176
+ "DC",
177
+ "Monocyte",
178
+ "NK cell",
179
+ "Other",
180
+ "T cell"
181
+ ],
182
+ "missing_types": [],
183
+ "bp_axis_genes": 5911,
184
+ "genes_kept": 5824,
185
+ "genes_dropped_not_bulk_valid": 0,
186
+ "genes_dropped_zero_reference": 87,
187
+ "gene_mode": "score",
188
+ "aggregates_sha256": "80b9c3401d8d4c724088317828a5c5095a5157ebc66d099e8399b6f948e507f8",
189
+ "files": {
190
+ "reference.tsv.gz": "9222df4860113fbd6c41b97ccc7dab14b2b3a856dbcb7ec3daad67ba95cff5c4",
191
+ "state_types.tsv": "24f0aabd5d55c377adc25280e9ef8971a32f01cd88034cff39e13016b630bb3d",
192
+ "mixture.tsv.gz": "d6be98552af6450108f4032160cb4bcd6213e6ed0e2347d64fd5aa5ca3d2169a"
193
+ },
194
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
195
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
196
+ }
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/cv4/state_types.tsv ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 3862
3
+ B cell|Memory B cell B cell 8148
4
+ B cell|Naive B cell B cell 17492
5
+ B cell|Plasma cell B cell 4555
6
+ B cell|Transitional B cell B cell 6961
7
+ DC|ASDC DC 216
8
+ DC|cDC1 DC 550
9
+ DC|cDC2 DC 7736
10
+ DC|pDC DC 2374
11
+ Monocyte|CD14 monocyte Monocyte 27682
12
+ Monocyte|CD16 monocyte Monocyte 20984
13
+ Monocyte|Intermediate monocyte Monocyte 13348
14
+ NK cell|CD56bright NK cell NK cell 7188
15
+ NK cell|CD56dim NK cell NK cell 37979
16
+ NK cell|Proliferating NK cell NK cell 10088
17
+ Other|Erythrocyte Other 1113
18
+ Other|ILC Other 549
19
+ Other|Platelet Other 1805
20
+ Other|Progenitor cell Other 700
21
+ T cell|CD8aa T cell 8097
22
+ T cell|DN T cell T cell 2393
23
+ T cell|MAIT T cell 2715
24
+ T cell|Memory CD4 T cell T cell 59466
25
+ T cell|Memory CD8 T cell T cell 66772
26
+ T cell|Naive CD4 T cell T cell 29483
27
+ T cell|Naive CD8 T cell T cell 10103
28
+ T cell|Proliferating T cell T cell 1975
29
+ T cell|Treg T cell 10564
30
+ T cell|gdT T cell 22431
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/cv4_full/SPLIT.json ADDED
@@ -0,0 +1,196 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "imperial_eskd",
3
+ "kind": "cv",
4
+ "idx": 4,
5
+ "reference": [
6
+ "C21_1004",
7
+ "C21_1704",
8
+ "C21_2504",
9
+ "C23_2204",
10
+ "C34_1404",
11
+ "C34_2104",
12
+ "C34_2504",
13
+ "C42_1504",
14
+ "C42_2204",
15
+ "C42_2704",
16
+ "C60_2504",
17
+ "C63_1704",
18
+ "C63_2404",
19
+ "C63_2904",
20
+ "C65_1704",
21
+ "C65_2104",
22
+ "C65_2504",
23
+ "C85_2004",
24
+ "C101_0601",
25
+ "C101_1101",
26
+ "C101_1301",
27
+ "C101_1801",
28
+ "C101_2001",
29
+ "C101_2502",
30
+ "C104_2204",
31
+ "C106_2204",
32
+ "C108_2204",
33
+ "C108_1501",
34
+ "C108_1801",
35
+ "C108_2201",
36
+ "C113_0605",
37
+ "C123_2404",
38
+ "C123_2904",
39
+ "C123_0505",
40
+ "C124_2404",
41
+ "C124_2704",
42
+ "C124_0105",
43
+ "C126_2504",
44
+ "C126_3004",
45
+ "C126_0605",
46
+ "C127_2504",
47
+ "C127_0405",
48
+ "C127_1105",
49
+ "C128_2504",
50
+ "C128_0405",
51
+ "C128_1105",
52
+ "C132_2804",
53
+ "C132_0205",
54
+ "C132_1105",
55
+ "C137_3004",
56
+ "C137_2502",
57
+ "C138_3004",
58
+ "C138_2301",
59
+ "C138_3001",
60
+ "C138_0202",
61
+ "C138_0402",
62
+ "C140_3004",
63
+ "C140_2801",
64
+ "C140_3001",
65
+ "C140_0202",
66
+ "C140_0402",
67
+ "C140_0602",
68
+ "C140_0902",
69
+ "C140_1103",
70
+ "C141_2001",
71
+ "C141_2201",
72
+ "C141_3001",
73
+ "C141_0202",
74
+ "C146_3004",
75
+ "C146_1201",
76
+ "C146_1401",
77
+ "C146_1601",
78
+ "C146_1901",
79
+ "C146_2301",
80
+ "C146_2701",
81
+ "C146_2502",
82
+ "C147_3004",
83
+ "C147_1401",
84
+ "C147_1901",
85
+ "C152_0405",
86
+ "C161_1105",
87
+ "C164_1105",
88
+ "C167_1205",
89
+ "C168_1205",
90
+ "C168_2001",
91
+ "C168_2301",
92
+ "C168_3001",
93
+ "C168_0202",
94
+ "C168_0403",
95
+ "C170_1205",
96
+ "C170_2301",
97
+ "C170_0202",
98
+ "C170_0402",
99
+ "C170_0403",
100
+ "C190_2605",
101
+ "C190_2901",
102
+ "C190_0102",
103
+ "C190_0302",
104
+ "C190_0502",
105
+ "C190_0802",
106
+ "C190_1002",
107
+ "C190_0903",
108
+ "C193_2605",
109
+ "C195_2605",
110
+ "C197_2605",
111
+ "C212_2705",
112
+ "C237_2805",
113
+ "C238_2905",
114
+ "C240_2905",
115
+ "C246_2905",
116
+ "C251_2905",
117
+ "C31_1304",
118
+ "C31_2004",
119
+ "C31_2704",
120
+ "C33_1401",
121
+ "C33_1601",
122
+ "C33_1901",
123
+ "C69_1804",
124
+ "C103_2204",
125
+ "C145_3004",
126
+ "C145_0701",
127
+ "C145_1201",
128
+ "C145_1401",
129
+ "C145_1901",
130
+ "C145_2301"
131
+ ],
132
+ "mixture": [
133
+ "C20_1004",
134
+ "C20_1404",
135
+ "C36_1504",
136
+ "C36_1704",
137
+ "C36_2104",
138
+ "C40_1504",
139
+ "C40_2204",
140
+ "C40_0105",
141
+ "C58_1604",
142
+ "C58_2501",
143
+ "C58_2901",
144
+ "C58_0102",
145
+ "C58_0402",
146
+ "C58_1003",
147
+ "C82_2504",
148
+ "C93_2104",
149
+ "C93_2704",
150
+ "C93_0405",
151
+ "C142_3004",
152
+ "C169_1205",
153
+ "C169_2001",
154
+ "C169_2301",
155
+ "C169_0202",
156
+ "C169_0403",
157
+ "C187_2605",
158
+ "C187_1201",
159
+ "C187_1401",
160
+ "C187_1901",
161
+ "C187_2301",
162
+ "C187_2502",
163
+ "C214_2705",
164
+ "C234_2805"
165
+ ],
166
+ "run_json_check": true,
167
+ "n_train_rows": 111,
168
+ "n_inner_val_rows": 14,
169
+ "n_reference_samples": 125,
170
+ "n_mixture_samples": 32,
171
+ "reference_cells": 387329,
172
+ "states": 29,
173
+ "states_merged_minor": 0,
174
+ "types": [
175
+ "B cell",
176
+ "DC",
177
+ "Monocyte",
178
+ "NK cell",
179
+ "Other",
180
+ "T cell"
181
+ ],
182
+ "missing_types": [],
183
+ "bp_axis_genes": 18599,
184
+ "genes_kept": 17064,
185
+ "genes_dropped_not_bulk_valid": 0,
186
+ "genes_dropped_zero_reference": 1535,
187
+ "gene_mode": "full",
188
+ "aggregates_sha256": "681a49cc9eb86b0d8b313bc417eef9b11c122894922181cf17a62765612ad1d4",
189
+ "files": {
190
+ "reference.tsv.gz": "1122e29e16bd05722679bfb0d072f68a7ab11ddf684a784e215a0012f35c6a87",
191
+ "state_types.tsv": "24f0aabd5d55c377adc25280e9ef8971a32f01cd88034cff39e13016b630bb3d",
192
+ "mixture.tsv.gz": "6cb47315dbee59c309b2369f17ac6c16a8d105da83124c70ea7647d272e0b968"
193
+ },
194
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
195
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
196
+ }
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/cv4_full/state_types.tsv ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 3862
3
+ B cell|Memory B cell B cell 8148
4
+ B cell|Naive B cell B cell 17492
5
+ B cell|Plasma cell B cell 4555
6
+ B cell|Transitional B cell B cell 6961
7
+ DC|ASDC DC 216
8
+ DC|cDC1 DC 550
9
+ DC|cDC2 DC 7736
10
+ DC|pDC DC 2374
11
+ Monocyte|CD14 monocyte Monocyte 27682
12
+ Monocyte|CD16 monocyte Monocyte 20984
13
+ Monocyte|Intermediate monocyte Monocyte 13348
14
+ NK cell|CD56bright NK cell NK cell 7188
15
+ NK cell|CD56dim NK cell NK cell 37979
16
+ NK cell|Proliferating NK cell NK cell 10088
17
+ Other|Erythrocyte Other 1113
18
+ Other|ILC Other 549
19
+ Other|Platelet Other 1805
20
+ Other|Progenitor cell Other 700
21
+ T cell|CD8aa T cell 8097
22
+ T cell|DN T cell T cell 2393
23
+ T cell|MAIT T cell 2715
24
+ T cell|Memory CD4 T cell T cell 59466
25
+ T cell|Memory CD8 T cell T cell 66772
26
+ T cell|Naive CD4 T cell T cell 29483
27
+ T cell|Naive CD8 T cell T cell 10103
28
+ T cell|Proliferating T cell T cell 1975
29
+ T cell|Treg T cell 10564
30
+ T cell|gdT T cell 22431