Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold1/summary.json

@@ -0,0 +1,1360 @@
+{
+ "schema": "paired_ft_scores.v1",
+ "dataset": "ye2026_sepsis",
+ "written_utc": "2026-10-08T02:06:44.962314+00:00",
+ "command": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+  "--dataset",
+  "ye2026_sepsis",
+  "--out",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold1",
+  "--threads",
+  "8",
+  "--arm",
+  "scsemi_n5__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold1/scsemi_n5__raw.npz",
+  "--arm",
+  "scsemi_n10__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold1/scsemi_n10__raw.npz",
+  "--arm",
+  "scsemi_n20__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold1/scsemi_n20__raw.npz",
+  "--arm",
+  "scsemi_n40__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold1/scsemi_n40__raw.npz",
+  "--case-groups",
+  "adult_sepsis,ped_sepsis",
+  "--control-groups",
+  "adult_HC,adult_ICU_ctrl,ped_HC,ped_ICU_ctrl"
+ ],
+ "arms": [
+  "scsemi_n5__raw",
+  "scsemi_n10__raw",
+  "scsemi_n20__raw",
+  "scsemi_n40__raw"
+ ],
+ "donors": [
+  "Abd-PS07",
+  "Abd-S120",
+  "Abd-S156",
+  "HC05",
+  "HC13",
+  "IC16",
+  "PHC01",
+  "PIC05",
+  "Res-PS12",
+  "Res-PS22",
+  "Res-S10",
+  "Res-S184",
+  "Res-S19",
+  "Skin-S142",
+  "Skin-S46",
+  "Skin-S52",
+  "Uri-S157"
+ ],
+ "n_donors": 17,
+ "reference": {
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+ "contrast_definition": {
+  "enabled": true,
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+  "group_source": "features groups",
+  "case_groups": [
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+   "ped_sepsis"
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+  "control_groups": [
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+   "adult_ICU_ctrl",
+   "ped_HC",
+   "ped_ICU_ctrl"
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+  "n_control_donors": 5,
+  "n_donors_in_neither": 0,
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+   true,
+   true,
+   false,
+   false,
+   false,
+   false,
+   false,
+   true,
+   true,
+   true,
+   true,
+   true,
+   true,
+   true,
+   true,
+   true
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+  "ctrl": [
+   false,
+   false,
+   false,
+   true,
+   true,
+   true,
+   true,
+   true,
+   false,
+   false,
+   false,
+   false,
+   false,
+   false,
+   false,
+   false,
+   false
+  ],
+  "groups": [
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+   "adult_sepsis",
+   "adult_sepsis",
+   "adult_HC",
+   "adult_HC",
+   "adult_ICU_ctrl",
+   "ped_HC",
+   "ped_ICU_ctrl",
+   "ped_sepsis",
+   "ped_sepsis",
+   "adult_sepsis",
+   "adult_sepsis",
+   "adult_sepsis",
+   "adult_sepsis",
+   "adult_sepsis",
+   "adult_sepsis",
+   "adult_sepsis"
+  ]
+ },
+ "deg_definition": {
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+  "score": "top-50 DEG overlap per cell type (benchmark total_top50_overlap, Welch backend)",
+  "source": "/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py",
+  "functions": [
+   "welch_bh_deg",
+   "top_deg_genes",
+   "jaccard"
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+  "fdr": 0.05,
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+   "B cell",
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+   "DC"
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+ },
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