Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/GENE_PANEL_PREFLIGHT.json

@@ -0,0 +1,11 @@
+{
+  "all_five_paired_panels_equal_current_1x_checkpoint_audit": {
+    "immicro": true,
+    "ye2026_sepsis": true,
+    "imperial_eskd": true,
+    "giroux2022": true,
+    "ji2025_chili": true
+  },
+  "gene_count": 6000,
+  "common_intersection_projection": false
+}

paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/LAUNCH_RECEIPT.json

@@ -0,0 +1,62 @@
+{
+  "observed_at": "2026-10-13T14:39:18.345020+00:00",
+  "selected_host": "server_1",
+  "reason": "server_2 already occupied at launch; server_1 fallback queued without preempting existing work",
+  "controller_unit": "pbisc-f01-trunk4x-campaign-v2-20261013.service",
+  "nas_mount_unit": "pbisc-f01x4-nas-20261013.service",
+  "profile_completed": true,
+  "profile_steps": 128,
+  "profile_cuda_peak_gib": 5.497453689575195,
+  "actual_pretrain_status_snapshot": {
+    "device": "cuda",
+    "epoch": 1,
+    "epochs": 16,
+    "estimated_seconds_remaining_in_epoch": 4789.429985429303,
+    "estimated_steps_in_epoch": 47763,
+    "global_step": 17400,
+    "last_checkpoint": null,
+    "latest_grad_norm": 0.006333124358206987,
+    "latest_loss": 0.24848240613937378,
+    "memory": {
+      "cuda_allocated_gib": 3.7096481323242188,
+      "cuda_free_gib": 1.0601577758789062,
+      "cuda_peak_allocated_gib": 5.497453689575195,
+      "cuda_reserved_gib": 5.75390625,
+      "cuda_total_gib": 121.68767166137695,
+      "system_available_gib": 90.93037796020508
+    },
+    "schema_version": "pbisc_sdd.status.v1",
+    "started_at": "2026-10-13T13:53:14.596818+00:00",
+    "status": "RUNNING",
+    "step_in_epoch": 17400,
+    "steps_per_second": 6.3395853144053,
+    "training_contract": "pbisc_sdd.ladder_training.v1",
+    "updated_at": "2026-10-13T14:39:14.609043+00:00"
+  },
+  "same_gene_context_gpu_verified": {
+    "actual_gpu_profile_gene_ids_match": true,
+    "actual_gpu_profile_gene_positions_match": true,
+    "parameters": 239955168,
+    "model_genes": 6000,
+    "condition_dim": 18006,
+    "cuda_peak_allocated_gib": 5.497453689575195
+  },
+  "full_pretraining_complete": false,
+  "downstream_matrix": {
+    "routes": 105,
+    "new_adaptations": 100,
+    "adapter_aliases": 5,
+    "generation_aliases": 5
+  },
+  "output_storage": {
+    "at": "2026-10-13T13:03:01.200684+00:00",
+    "mounted": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/f01_trunk4x_complete_20261013/payload",
+    "remote_storage": "spark-0110:/home/sj_server_2/nas_fast/PBISC/pbisc-diffusion/f01_trunk4x_complete_20261013",
+    "free_bytes": 3910422380544,
+    "probe_sha256": "4712bf97313b672460348d5685f7030aa2c03292fb5c93d60aa8911fa55b1fe3",
+    "local_readback": true,
+    "remote_readback": true,
+    "source_deletion": false,
+    "intended_payload_budget_gib": 1000
+  }
+}

paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/MATRIX_VERIFIED.json

@@ -0,0 +1,10 @@
+{
+  "status": "PASS",
+  "jobs": 105,
+  "new_adapters": 100,
+  "all_train_validation_test_sets_replayed": true,
+  "donor_overlap_count": 0,
+  "strict_support_manifests_validated": 40,
+  "historical_run_condition_hashes_verified": 65,
+  "python_files_parse": true
+}