Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/09ce088243848c5c/manifest.json +623 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/0b2a8a6ec8791fee/support.json +182 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/d45f40def33c35ef/metrics.csv +25 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/e905b8829d145e87/en.csv +25 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/09ce088243848c5c/manifest.json
ADDED
|
@@ -0,0 +1,623 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "imperial_eskd",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-13T00:22:36.405243+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/imperial_eskd/disease/draw0/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0",
|
| 13 |
+
"--action",
|
| 14 |
+
"all",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
+
"C20_1004",
|
| 31 |
+
"C20_1404",
|
| 32 |
+
"C21_1004",
|
| 33 |
+
"C21_1704",
|
| 34 |
+
"C21_2504",
|
| 35 |
+
"C23_2204",
|
| 36 |
+
"C31_1304",
|
| 37 |
+
"C31_2004",
|
| 38 |
+
"C31_2704",
|
| 39 |
+
"C33_1401",
|
| 40 |
+
"C33_1601",
|
| 41 |
+
"C33_1901",
|
| 42 |
+
"C34_1404",
|
| 43 |
+
"C34_2104",
|
| 44 |
+
"C34_2504",
|
| 45 |
+
"C36_1504",
|
| 46 |
+
"C36_1704",
|
| 47 |
+
"C36_2104",
|
| 48 |
+
"C40_1504",
|
| 49 |
+
"C40_2204",
|
| 50 |
+
"C40_0105",
|
| 51 |
+
"C42_1504",
|
| 52 |
+
"C42_2204",
|
| 53 |
+
"C42_2704",
|
| 54 |
+
"C60_2504",
|
| 55 |
+
"C63_1704",
|
| 56 |
+
"C63_2404",
|
| 57 |
+
"C63_2904",
|
| 58 |
+
"C65_1704",
|
| 59 |
+
"C65_2104",
|
| 60 |
+
"C65_2504",
|
| 61 |
+
"C69_1804",
|
| 62 |
+
"C82_2504",
|
| 63 |
+
"C85_2004",
|
| 64 |
+
"C93_2104",
|
| 65 |
+
"C93_2704",
|
| 66 |
+
"C93_0405",
|
| 67 |
+
"C101_0601",
|
| 68 |
+
"C101_1101",
|
| 69 |
+
"C101_1301",
|
| 70 |
+
"C101_1801",
|
| 71 |
+
"C101_2001",
|
| 72 |
+
"C101_2502",
|
| 73 |
+
"C103_2204",
|
| 74 |
+
"C104_2204",
|
| 75 |
+
"C108_2204",
|
| 76 |
+
"C108_1501",
|
| 77 |
+
"C108_1801",
|
| 78 |
+
"C108_2201",
|
| 79 |
+
"C113_0605",
|
| 80 |
+
"C123_2404",
|
| 81 |
+
"C123_2904",
|
| 82 |
+
"C123_0505",
|
| 83 |
+
"C124_2404",
|
| 84 |
+
"C124_2704",
|
| 85 |
+
"C124_0105",
|
| 86 |
+
"C127_2504",
|
| 87 |
+
"C127_0405",
|
| 88 |
+
"C127_1105",
|
| 89 |
+
"C128_2504",
|
| 90 |
+
"C128_0405",
|
| 91 |
+
"C128_1105",
|
| 92 |
+
"C132_2804",
|
| 93 |
+
"C132_0205",
|
| 94 |
+
"C132_1105",
|
| 95 |
+
"C137_3004",
|
| 96 |
+
"C137_2502",
|
| 97 |
+
"C138_3004",
|
| 98 |
+
"C138_2301",
|
| 99 |
+
"C138_3001",
|
| 100 |
+
"C138_0202",
|
| 101 |
+
"C138_0402",
|
| 102 |
+
"C140_3004",
|
| 103 |
+
"C140_2801",
|
| 104 |
+
"C140_3001",
|
| 105 |
+
"C140_0202",
|
| 106 |
+
"C140_0402",
|
| 107 |
+
"C140_0602",
|
| 108 |
+
"C140_0902",
|
| 109 |
+
"C140_1103",
|
| 110 |
+
"C142_3004",
|
| 111 |
+
"C145_3004",
|
| 112 |
+
"C145_0701",
|
| 113 |
+
"C145_1201",
|
| 114 |
+
"C145_1401",
|
| 115 |
+
"C145_1901",
|
| 116 |
+
"C145_2301",
|
| 117 |
+
"C146_3004",
|
| 118 |
+
"C146_1201",
|
| 119 |
+
"C146_1401",
|
| 120 |
+
"C146_1601",
|
| 121 |
+
"C146_1901",
|
| 122 |
+
"C146_2301",
|
| 123 |
+
"C146_2701",
|
| 124 |
+
"C146_2502",
|
| 125 |
+
"C147_3004",
|
| 126 |
+
"C147_1401",
|
| 127 |
+
"C147_1901",
|
| 128 |
+
"C152_0405",
|
| 129 |
+
"C161_1105",
|
| 130 |
+
"C164_1105",
|
| 131 |
+
"C167_1205",
|
| 132 |
+
"C168_1205",
|
| 133 |
+
"C168_2001",
|
| 134 |
+
"C168_2301",
|
| 135 |
+
"C168_3001",
|
| 136 |
+
"C168_0202",
|
| 137 |
+
"C168_0403",
|
| 138 |
+
"C169_1205",
|
| 139 |
+
"C169_2001",
|
| 140 |
+
"C169_2301",
|
| 141 |
+
"C169_0202",
|
| 142 |
+
"C169_0403",
|
| 143 |
+
"C170_1205",
|
| 144 |
+
"C170_2301",
|
| 145 |
+
"C170_0202",
|
| 146 |
+
"C170_0402",
|
| 147 |
+
"C170_0403",
|
| 148 |
+
"C187_2605",
|
| 149 |
+
"C187_1201",
|
| 150 |
+
"C187_1401",
|
| 151 |
+
"C187_1901",
|
| 152 |
+
"C187_2301",
|
| 153 |
+
"C187_2502",
|
| 154 |
+
"C190_2605",
|
| 155 |
+
"C190_2901",
|
| 156 |
+
"C190_0102",
|
| 157 |
+
"C190_0302",
|
| 158 |
+
"C190_0502",
|
| 159 |
+
"C190_0802",
|
| 160 |
+
"C190_1002",
|
| 161 |
+
"C190_0903",
|
| 162 |
+
"C193_2605",
|
| 163 |
+
"C195_2605",
|
| 164 |
+
"C197_2605",
|
| 165 |
+
"C212_2705",
|
| 166 |
+
"C214_2705",
|
| 167 |
+
"C234_2805",
|
| 168 |
+
"C238_2905",
|
| 169 |
+
"C240_2905",
|
| 170 |
+
"C246_2905",
|
| 171 |
+
"C251_2905"
|
| 172 |
+
],
|
| 173 |
+
"n_samples": 142,
|
| 174 |
+
"contrast": {
|
| 175 |
+
"case_groups": [
|
| 176 |
+
"covid_positive"
|
| 177 |
+
],
|
| 178 |
+
"control_groups": [
|
| 179 |
+
"covid_negative"
|
| 180 |
+
],
|
| 181 |
+
"n_case_donors": 102,
|
| 182 |
+
"n_control_donors": 31
|
| 183 |
+
},
|
| 184 |
+
"calls": {
|
| 185 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/score": {
|
| 186 |
+
"arms": [
|
| 187 |
+
"lora",
|
| 188 |
+
"pairedcal",
|
| 189 |
+
"scsemi",
|
| 190 |
+
"raw",
|
| 191 |
+
"refcal"
|
| 192 |
+
],
|
| 193 |
+
"summary_sha256": "d129eeb3ec48f773ce0b2629848507d14e210d7275394cfe33bd32d1b6da9412",
|
| 194 |
+
"contrast_csv_sha256": "4665d01929a44a1d198e05e88d3b380ad582876050ac632976be578142eb838e"
|
| 195 |
+
}
|
| 196 |
+
},
|
| 197 |
+
"notes": {
|
| 198 |
+
"source_tree": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores"
|
| 199 |
+
},
|
| 200 |
+
"reference_sha256": "34b4caa3f8a60b46d5faf58f09cdaa5622bcce19e4c45d9902a711fead96375e",
|
| 201 |
+
"deg_reference": {
|
| 202 |
+
"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/imperial_eskd/deg_reference.npz",
|
| 203 |
+
"sha256": "8fada1ace7530b79bfc5c5201b9cb60399ff77d083dd8b53b13cfbe900cda55c"
|
| 204 |
+
},
|
| 205 |
+
"gene_exclusion": null,
|
| 206 |
+
"n_genes_disease_scores": 5927,
|
| 207 |
+
"genes_per_type": {
|
| 208 |
+
"T cell": 3037,
|
| 209 |
+
"B cell": 3192,
|
| 210 |
+
"Monocyte": 2882,
|
| 211 |
+
"NK cell": 2972
|
| 212 |
+
},
|
| 213 |
+
"arms": {
|
| 214 |
+
"lora": {
|
| 215 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/score",
|
| 216 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/lora.npz",
|
| 217 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/lora.npz",
|
| 218 |
+
"npz_sha256": "ec73f58c1e0e34d6ab10e83f27156145227987e90f158b35ab78cec17069807a",
|
| 219 |
+
"receipt_verified": true,
|
| 220 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw0/test_raw.npz",
|
| 221 |
+
"condition_sha256": "735672055b9222e45379a85fb0de4994028d33943ba220f048c7b6eafca65e0a",
|
| 222 |
+
"condition_label": "test_raw.npz@73567205",
|
| 223 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw0/test_raw.npz",
|
| 224 |
+
"condition_key": "bcast:735672055b9222e4",
|
| 225 |
+
"n_generated_cells": 213000,
|
| 226 |
+
"label": "lora",
|
| 227 |
+
"seconds": 21.4
|
| 228 |
+
},
|
| 229 |
+
"pairedcal": {
|
| 230 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/score",
|
| 231 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/pairedcal.npz",
|
| 232 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/pairedcal.npz",
|
| 233 |
+
"npz_sha256": "308bce8e352f6ea90c3f6247afd8a9f92c306144c951d4cb7e35caac9baef033",
|
| 234 |
+
"receipt_verified": true,
|
| 235 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw0/test_cal.npz",
|
| 236 |
+
"condition_sha256": "e74507e86137aeb8f348ddd7ae4af5b258668af4c08c627d9219d03fc477c8e5",
|
| 237 |
+
"condition_label": "test_cal.npz@e74507e8",
|
| 238 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw0/test_cal.npz",
|
| 239 |
+
"condition_key": "bcast:e74507e86137aeb8",
|
| 240 |
+
"n_generated_cells": 213000,
|
| 241 |
+
"label": "pairedcal",
|
| 242 |
+
"seconds": 22.1
|
| 243 |
+
},
|
| 244 |
+
"scsemi": {
|
| 245 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/score",
|
| 246 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/scsemi.npz",
|
| 247 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/scsemi.npz",
|
| 248 |
+
"npz_sha256": "8ed169cfa035daad67ff6f405bc9b3f8df215ea1fc55a746d33e072d52286220",
|
| 249 |
+
"receipt_verified": true,
|
| 250 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw0/test_raw.npz",
|
| 251 |
+
"condition_sha256": "735672055b9222e45379a85fb0de4994028d33943ba220f048c7b6eafca65e0a",
|
| 252 |
+
"condition_label": "test_raw.npz@73567205",
|
| 253 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw0/test_raw.npz",
|
| 254 |
+
"condition_key": "bcast:735672055b9222e4",
|
| 255 |
+
"n_generated_cells": 213000,
|
| 256 |
+
"label": "scsemi",
|
| 257 |
+
"seconds": 17.2
|
| 258 |
+
},
|
| 259 |
+
"raw": {
|
| 260 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/score",
|
| 261 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 262 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 263 |
+
"npz_sha256": "933d3797441cee599cc8da7a3df0a624edc71e71672f6f5bea877e88cbb53fb3",
|
| 264 |
+
"receipt_verified": true,
|
| 265 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/imperial_eskd/conditions_raw.npz",
|
| 266 |
+
"condition_sha256": "0ac35b61c09fb1d50ca64e314c62b1adb84f3759ae5b5b029a3496c7efade10f",
|
| 267 |
+
"condition_label": "conditions_raw.npz@0ac35b61",
|
| 268 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/imperial_eskd/conditions_raw.npz",
|
| 269 |
+
"condition_key": "bcast:0ac35b61c09fb1d5",
|
| 270 |
+
"n_generated_cells": 213000,
|
| 271 |
+
"label": "raw",
|
| 272 |
+
"seconds": 28.3
|
| 273 |
+
},
|
| 274 |
+
"refcal": {
|
| 275 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/score",
|
| 276 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz",
|
| 277 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz",
|
| 278 |
+
"npz_sha256": "ba80faf1dc9942da1935d4f73e780cc67289eadf6e4a8f51d6a9035de4d3fcff",
|
| 279 |
+
"receipt_verified": true,
|
| 280 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/imperial_eskd/conditions_refcal.npz",
|
| 281 |
+
"condition_sha256": "85e8a48cb6168da565b8e0d953774e29380ed142a9f0afdca93abf157cd8c35e",
|
| 282 |
+
"condition_label": "conditions_refcal.npz@85e8a48c",
|
| 283 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/imperial_eskd/conditions_refcal.npz",
|
| 284 |
+
"condition_key": "bcast:85e8a48cb6168da5",
|
| 285 |
+
"n_generated_cells": 213000,
|
| 286 |
+
"label": "refcal",
|
| 287 |
+
"seconds": 23.5
|
| 288 |
+
}
|
| 289 |
+
},
|
| 290 |
+
"observed_cells": {
|
| 291 |
+
"inputs_sha256": {
|
| 292 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/cells_panel6k.npz": "d648fa1b9efa15f02c5500c85795d33c39cc88857560bf8f0aae41f6d43a3de7",
|
| 293 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/cells_obs.parquet": "58d685b6b9510cd07bcabe61f90a1567b9d483efe3c1c035305fd3525682aa97"
|
| 294 |
+
},
|
| 295 |
+
"labels_sha256": "b7451fb96819132a1b72d739ebe95a78674a764769ee80746975adaed55cf67f",
|
| 296 |
+
"n_cells_4types_scored": 435151
|
| 297 |
+
},
|
| 298 |
+
"params": {
|
| 299 |
+
"split_seeds": [
|
| 300 |
+
20260926,
|
| 301 |
+
20260927,
|
| 302 |
+
20260928,
|
| 303 |
+
20260929,
|
| 304 |
+
20260930
|
| 305 |
+
],
|
| 306 |
+
"split_rule": "per scored sample x contrast type: permutation from default_rng([seed, uint64 LE of sha256('<sample>|<type>')[:8]]) of its cells in canonical order; half A = first floor(n/2) positions, half B = the rest",
|
| 307 |
+
"cat_ks": [
|
| 308 |
+
10,
|
| 309 |
+
20,
|
| 310 |
+
50,
|
| 311 |
+
100,
|
| 312 |
+
200,
|
| 313 |
+
500
|
| 314 |
+
],
|
| 315 |
+
"rbo_p": 0.98,
|
| 316 |
+
"limma_filters": [
|
| 317 |
+
"nonzero",
|
| 318 |
+
"filterByExpr"
|
| 319 |
+
],
|
| 320 |
+
"primary_filter": "nonzero",
|
| 321 |
+
"fdr": 0.05,
|
| 322 |
+
"top_n": 50,
|
| 323 |
+
"min_detect_frac": 0.01,
|
| 324 |
+
"poisson_seed": 20260916,
|
| 325 |
+
"repro_tol": 1e-09
|
| 326 |
+
},
|
| 327 |
+
"limma": {
|
| 328 |
+
"rscript": "/home/sj_server_1/miniforge3/bin/Rscript",
|
| 329 |
+
"versions": [
|
| 330 |
+
"R version 4.5.2 (2025-10-31)",
|
| 331 |
+
"limma 3.66.0",
|
| 332 |
+
"edgeR 4.8.1"
|
| 333 |
+
],
|
| 334 |
+
"n_jobs": 68,
|
| 335 |
+
"n_not_ok": 0,
|
| 336 |
+
"seconds": 24.1,
|
| 337 |
+
"job_matrices": {
|
| 338 |
+
"obs|T cell": {
|
| 339 |
+
"key": "obs|T cell",
|
| 340 |
+
"n_samples": 133,
|
| 341 |
+
"n_case": 102,
|
| 342 |
+
"n_control": 31,
|
| 343 |
+
"n_zero_library_dropped": 0,
|
| 344 |
+
"defined": true
|
| 345 |
+
},
|
| 346 |
+
"obs|B cell": {
|
| 347 |
+
"key": "obs|B cell",
|
| 348 |
+
"n_samples": 133,
|
| 349 |
+
"n_case": 102,
|
| 350 |
+
"n_control": 31,
|
| 351 |
+
"n_zero_library_dropped": 0,
|
| 352 |
+
"defined": true
|
| 353 |
+
},
|
| 354 |
+
"obs|Monocyte": {
|
| 355 |
+
"key": "obs|Monocyte",
|
| 356 |
+
"n_samples": 132,
|
| 357 |
+
"n_case": 101,
|
| 358 |
+
"n_control": 31,
|
| 359 |
+
"n_zero_library_dropped": 0,
|
| 360 |
+
"defined": true
|
| 361 |
+
},
|
| 362 |
+
"obs|NK cell": {
|
| 363 |
+
"key": "obs|NK cell",
|
| 364 |
+
"n_samples": 133,
|
| 365 |
+
"n_case": 102,
|
| 366 |
+
"n_control": 31,
|
| 367 |
+
"n_zero_library_dropped": 0,
|
| 368 |
+
"defined": true
|
| 369 |
+
},
|
| 370 |
+
"obs|DC": {
|
| 371 |
+
"key": "obs|DC",
|
| 372 |
+
"n_samples": 133,
|
| 373 |
+
"n_case": 102,
|
| 374 |
+
"n_control": 31,
|
| 375 |
+
"n_zero_library_dropped": 0,
|
| 376 |
+
"defined": true
|
| 377 |
+
},
|
| 378 |
+
"gen:lora|T cell": {
|
| 379 |
+
"key": "gen:lora|T cell",
|
| 380 |
+
"n_samples": 133,
|
| 381 |
+
"n_case": 102,
|
| 382 |
+
"n_control": 31,
|
| 383 |
+
"n_zero_library_dropped": 0,
|
| 384 |
+
"defined": true
|
| 385 |
+
},
|
| 386 |
+
"gen:lora|B cell": {
|
| 387 |
+
"key": "gen:lora|B cell",
|
| 388 |
+
"n_samples": 133,
|
| 389 |
+
"n_case": 102,
|
| 390 |
+
"n_control": 31,
|
| 391 |
+
"n_zero_library_dropped": 0,
|
| 392 |
+
"defined": true
|
| 393 |
+
},
|
| 394 |
+
"gen:lora|Monocyte": {
|
| 395 |
+
"key": "gen:lora|Monocyte",
|
| 396 |
+
"n_samples": 133,
|
| 397 |
+
"n_case": 102,
|
| 398 |
+
"n_control": 31,
|
| 399 |
+
"n_zero_library_dropped": 0,
|
| 400 |
+
"defined": true
|
| 401 |
+
},
|
| 402 |
+
"gen:lora|NK cell": {
|
| 403 |
+
"key": "gen:lora|NK cell",
|
| 404 |
+
"n_samples": 133,
|
| 405 |
+
"n_case": 102,
|
| 406 |
+
"n_control": 31,
|
| 407 |
+
"n_zero_library_dropped": 0,
|
| 408 |
+
"defined": true
|
| 409 |
+
},
|
| 410 |
+
"gen:lora|DC": {
|
| 411 |
+
"key": "gen:lora|DC",
|
| 412 |
+
"n_samples": 133,
|
| 413 |
+
"n_case": 102,
|
| 414 |
+
"n_control": 31,
|
| 415 |
+
"n_zero_library_dropped": 0,
|
| 416 |
+
"defined": true
|
| 417 |
+
},
|
| 418 |
+
"bcast:735672055b9222e4": {
|
| 419 |
+
"key": "bcast:735672055b9222e4",
|
| 420 |
+
"n_samples": 133,
|
| 421 |
+
"n_case": 102,
|
| 422 |
+
"n_control": 31,
|
| 423 |
+
"n_zero_library_dropped": 0,
|
| 424 |
+
"defined": true
|
| 425 |
+
},
|
| 426 |
+
"gen:pairedcal|T cell": {
|
| 427 |
+
"key": "gen:pairedcal|T cell",
|
| 428 |
+
"n_samples": 133,
|
| 429 |
+
"n_case": 102,
|
| 430 |
+
"n_control": 31,
|
| 431 |
+
"n_zero_library_dropped": 0,
|
| 432 |
+
"defined": true
|
| 433 |
+
},
|
| 434 |
+
"gen:pairedcal|B cell": {
|
| 435 |
+
"key": "gen:pairedcal|B cell",
|
| 436 |
+
"n_samples": 133,
|
| 437 |
+
"n_case": 102,
|
| 438 |
+
"n_control": 31,
|
| 439 |
+
"n_zero_library_dropped": 0,
|
| 440 |
+
"defined": true
|
| 441 |
+
},
|
| 442 |
+
"gen:pairedcal|Monocyte": {
|
| 443 |
+
"key": "gen:pairedcal|Monocyte",
|
| 444 |
+
"n_samples": 133,
|
| 445 |
+
"n_case": 102,
|
| 446 |
+
"n_control": 31,
|
| 447 |
+
"n_zero_library_dropped": 0,
|
| 448 |
+
"defined": true
|
| 449 |
+
},
|
| 450 |
+
"gen:pairedcal|NK cell": {
|
| 451 |
+
"key": "gen:pairedcal|NK cell",
|
| 452 |
+
"n_samples": 133,
|
| 453 |
+
"n_case": 102,
|
| 454 |
+
"n_control": 31,
|
| 455 |
+
"n_zero_library_dropped": 0,
|
| 456 |
+
"defined": true
|
| 457 |
+
},
|
| 458 |
+
"gen:pairedcal|DC": {
|
| 459 |
+
"key": "gen:pairedcal|DC",
|
| 460 |
+
"n_samples": 133,
|
| 461 |
+
"n_case": 102,
|
| 462 |
+
"n_control": 31,
|
| 463 |
+
"n_zero_library_dropped": 0,
|
| 464 |
+
"defined": true
|
| 465 |
+
},
|
| 466 |
+
"bcast:e74507e86137aeb8": {
|
| 467 |
+
"key": "bcast:e74507e86137aeb8",
|
| 468 |
+
"n_samples": 133,
|
| 469 |
+
"n_case": 102,
|
| 470 |
+
"n_control": 31,
|
| 471 |
+
"n_zero_library_dropped": 0,
|
| 472 |
+
"defined": true
|
| 473 |
+
},
|
| 474 |
+
"gen:scsemi|T cell": {
|
| 475 |
+
"key": "gen:scsemi|T cell",
|
| 476 |
+
"n_samples": 133,
|
| 477 |
+
"n_case": 102,
|
| 478 |
+
"n_control": 31,
|
| 479 |
+
"n_zero_library_dropped": 0,
|
| 480 |
+
"defined": true
|
| 481 |
+
},
|
| 482 |
+
"gen:scsemi|B cell": {
|
| 483 |
+
"key": "gen:scsemi|B cell",
|
| 484 |
+
"n_samples": 133,
|
| 485 |
+
"n_case": 102,
|
| 486 |
+
"n_control": 31,
|
| 487 |
+
"n_zero_library_dropped": 0,
|
| 488 |
+
"defined": true
|
| 489 |
+
},
|
| 490 |
+
"gen:scsemi|Monocyte": {
|
| 491 |
+
"key": "gen:scsemi|Monocyte",
|
| 492 |
+
"n_samples": 133,
|
| 493 |
+
"n_case": 102,
|
| 494 |
+
"n_control": 31,
|
| 495 |
+
"n_zero_library_dropped": 0,
|
| 496 |
+
"defined": true
|
| 497 |
+
},
|
| 498 |
+
"gen:scsemi|NK cell": {
|
| 499 |
+
"key": "gen:scsemi|NK cell",
|
| 500 |
+
"n_samples": 133,
|
| 501 |
+
"n_case": 102,
|
| 502 |
+
"n_control": 31,
|
| 503 |
+
"n_zero_library_dropped": 0,
|
| 504 |
+
"defined": true
|
| 505 |
+
},
|
| 506 |
+
"gen:scsemi|DC": {
|
| 507 |
+
"key": "gen:scsemi|DC",
|
| 508 |
+
"n_samples": 133,
|
| 509 |
+
"n_case": 102,
|
| 510 |
+
"n_control": 31,
|
| 511 |
+
"n_zero_library_dropped": 0,
|
| 512 |
+
"defined": true
|
| 513 |
+
},
|
| 514 |
+
"gen:raw|T cell": {
|
| 515 |
+
"key": "gen:raw|T cell",
|
| 516 |
+
"n_samples": 133,
|
| 517 |
+
"n_case": 102,
|
| 518 |
+
"n_control": 31,
|
| 519 |
+
"n_zero_library_dropped": 0,
|
| 520 |
+
"defined": true
|
| 521 |
+
},
|
| 522 |
+
"gen:raw|B cell": {
|
| 523 |
+
"key": "gen:raw|B cell",
|
| 524 |
+
"n_samples": 133,
|
| 525 |
+
"n_case": 102,
|
| 526 |
+
"n_control": 31,
|
| 527 |
+
"n_zero_library_dropped": 0,
|
| 528 |
+
"defined": true
|
| 529 |
+
},
|
| 530 |
+
"gen:raw|Monocyte": {
|
| 531 |
+
"key": "gen:raw|Monocyte",
|
| 532 |
+
"n_samples": 133,
|
| 533 |
+
"n_case": 102,
|
| 534 |
+
"n_control": 31,
|
| 535 |
+
"n_zero_library_dropped": 0,
|
| 536 |
+
"defined": true
|
| 537 |
+
},
|
| 538 |
+
"gen:raw|NK cell": {
|
| 539 |
+
"key": "gen:raw|NK cell",
|
| 540 |
+
"n_samples": 133,
|
| 541 |
+
"n_case": 102,
|
| 542 |
+
"n_control": 31,
|
| 543 |
+
"n_zero_library_dropped": 0,
|
| 544 |
+
"defined": true
|
| 545 |
+
},
|
| 546 |
+
"gen:raw|DC": {
|
| 547 |
+
"key": "gen:raw|DC",
|
| 548 |
+
"n_samples": 133,
|
| 549 |
+
"n_case": 102,
|
| 550 |
+
"n_control": 31,
|
| 551 |
+
"n_zero_library_dropped": 0,
|
| 552 |
+
"defined": true
|
| 553 |
+
},
|
| 554 |
+
"bcast:0ac35b61c09fb1d5": {
|
| 555 |
+
"key": "bcast:0ac35b61c09fb1d5",
|
| 556 |
+
"n_samples": 133,
|
| 557 |
+
"n_case": 102,
|
| 558 |
+
"n_control": 31,
|
| 559 |
+
"n_zero_library_dropped": 0,
|
| 560 |
+
"defined": true
|
| 561 |
+
},
|
| 562 |
+
"gen:refcal|T cell": {
|
| 563 |
+
"key": "gen:refcal|T cell",
|
| 564 |
+
"n_samples": 133,
|
| 565 |
+
"n_case": 102,
|
| 566 |
+
"n_control": 31,
|
| 567 |
+
"n_zero_library_dropped": 0,
|
| 568 |
+
"defined": true
|
| 569 |
+
},
|
| 570 |
+
"gen:refcal|B cell": {
|
| 571 |
+
"key": "gen:refcal|B cell",
|
| 572 |
+
"n_samples": 133,
|
| 573 |
+
"n_case": 102,
|
| 574 |
+
"n_control": 31,
|
| 575 |
+
"n_zero_library_dropped": 0,
|
| 576 |
+
"defined": true
|
| 577 |
+
},
|
| 578 |
+
"gen:refcal|Monocyte": {
|
| 579 |
+
"key": "gen:refcal|Monocyte",
|
| 580 |
+
"n_samples": 133,
|
| 581 |
+
"n_case": 102,
|
| 582 |
+
"n_control": 31,
|
| 583 |
+
"n_zero_library_dropped": 0,
|
| 584 |
+
"defined": true
|
| 585 |
+
},
|
| 586 |
+
"gen:refcal|NK cell": {
|
| 587 |
+
"key": "gen:refcal|NK cell",
|
| 588 |
+
"n_samples": 133,
|
| 589 |
+
"n_case": 102,
|
| 590 |
+
"n_control": 31,
|
| 591 |
+
"n_zero_library_dropped": 0,
|
| 592 |
+
"defined": true
|
| 593 |
+
},
|
| 594 |
+
"gen:refcal|DC": {
|
| 595 |
+
"key": "gen:refcal|DC",
|
| 596 |
+
"n_samples": 133,
|
| 597 |
+
"n_case": 102,
|
| 598 |
+
"n_control": 31,
|
| 599 |
+
"n_zero_library_dropped": 0,
|
| 600 |
+
"defined": true
|
| 601 |
+
},
|
| 602 |
+
"bcast:85e8a48cb6168da5": {
|
| 603 |
+
"key": "bcast:85e8a48cb6168da5",
|
| 604 |
+
"n_samples": 133,
|
| 605 |
+
"n_case": 102,
|
| 606 |
+
"n_control": 31,
|
| 607 |
+
"n_zero_library_dropped": 0,
|
| 608 |
+
"defined": true
|
| 609 |
+
}
|
| 610 |
+
}
|
| 611 |
+
},
|
| 612 |
+
"repro_all_pass": true,
|
| 613 |
+
"split_half_seconds": 8.2,
|
| 614 |
+
"fetched_from_server2": [],
|
| 615 |
+
"code_sha256": {
|
| 616 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra.py": "b1ae7ded945177e61c1b2971c419c3adf5f9eb5e8868d427d1ba9d0f15fbf482",
|
| 617 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra_limma.R": "f0685f68ddfc00c01fc842073950981c176d980194de2aa70e324f197989f7dc",
|
| 618 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
|
| 619 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 620 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881"
|
| 621 |
+
},
|
| 622 |
+
"seconds": 145.6
|
| 623 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/0b2a8a6ec8791fee/support.json
ADDED
|
@@ -0,0 +1,182 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "ji2025_chili",
|
| 4 |
+
"design": "disease_existing_draw",
|
| 5 |
+
"unit": "draw4_n5",
|
| 6 |
+
"n_pairs": 5,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"N005_BC",
|
| 9 |
+
"N158_AC",
|
| 10 |
+
"N129_BC",
|
| 11 |
+
"N002_TOL",
|
| 12 |
+
"N064_TOL"
|
| 13 |
+
],
|
| 14 |
+
"train_donor_ids": [
|
| 15 |
+
"N005",
|
| 16 |
+
"N158",
|
| 17 |
+
"N129",
|
| 18 |
+
"N002",
|
| 19 |
+
"N064"
|
| 20 |
+
],
|
| 21 |
+
"test_sample_ids": [
|
| 22 |
+
"N032_AC",
|
| 23 |
+
"N038_BC",
|
| 24 |
+
"N038_AC",
|
| 25 |
+
"N055_AC",
|
| 26 |
+
"N136_TOL",
|
| 27 |
+
"N136_FU1",
|
| 28 |
+
"N138_TOL",
|
| 29 |
+
"N138_FU1",
|
| 30 |
+
"N128_BC",
|
| 31 |
+
"N128_AC",
|
| 32 |
+
"N147_TOL",
|
| 33 |
+
"N150_BC",
|
| 34 |
+
"N159_BC",
|
| 35 |
+
"N001_TOL",
|
| 36 |
+
"N001_FU1",
|
| 37 |
+
"N012_TOL",
|
| 38 |
+
"N012_FU1",
|
| 39 |
+
"N018_BC",
|
| 40 |
+
"N018_AC",
|
| 41 |
+
"N022_TOL",
|
| 42 |
+
"N022_FU1",
|
| 43 |
+
"N035_TOL",
|
| 44 |
+
"N043_TOL",
|
| 45 |
+
"N043_FU1"
|
| 46 |
+
],
|
| 47 |
+
"test_donor_ids": [
|
| 48 |
+
"N032",
|
| 49 |
+
"N038",
|
| 50 |
+
"N038",
|
| 51 |
+
"N055",
|
| 52 |
+
"N136",
|
| 53 |
+
"N136",
|
| 54 |
+
"N138",
|
| 55 |
+
"N138",
|
| 56 |
+
"N128",
|
| 57 |
+
"N128",
|
| 58 |
+
"N147",
|
| 59 |
+
"N150",
|
| 60 |
+
"N159",
|
| 61 |
+
"N001",
|
| 62 |
+
"N001",
|
| 63 |
+
"N012",
|
| 64 |
+
"N012",
|
| 65 |
+
"N018",
|
| 66 |
+
"N018",
|
| 67 |
+
"N022",
|
| 68 |
+
"N022",
|
| 69 |
+
"N035",
|
| 70 |
+
"N043",
|
| 71 |
+
"N043"
|
| 72 |
+
],
|
| 73 |
+
"excluded_sample_ids": [
|
| 74 |
+
"N002_FU1",
|
| 75 |
+
"N005_AC",
|
| 76 |
+
"N064_FU1",
|
| 77 |
+
"N129_AC",
|
| 78 |
+
"N158_BC"
|
| 79 |
+
],
|
| 80 |
+
"seed": null,
|
| 81 |
+
"selection_audit": [
|
| 82 |
+
{
|
| 83 |
+
"donor_id": "N005",
|
| 84 |
+
"assigned_stratum": false,
|
| 85 |
+
"selected_sample_id": "N005_BC",
|
| 86 |
+
"candidates": [
|
| 87 |
+
{
|
| 88 |
+
"sample_id": "N005_BC",
|
| 89 |
+
"time_value": 0.0,
|
| 90 |
+
"time_raw": "BC",
|
| 91 |
+
"time_field": "timepoint",
|
| 92 |
+
"group": "BC"
|
| 93 |
+
},
|
| 94 |
+
{
|
| 95 |
+
"sample_id": "N005_AC",
|
| 96 |
+
"time_value": 1.0,
|
| 97 |
+
"time_raw": "AC",
|
| 98 |
+
"time_field": "timepoint",
|
| 99 |
+
"group": "AC"
|
| 100 |
+
}
|
| 101 |
+
]
|
| 102 |
+
},
|
| 103 |
+
{
|
| 104 |
+
"donor_id": "N158",
|
| 105 |
+
"assigned_stratum": false,
|
| 106 |
+
"selected_sample_id": "N158_AC",
|
| 107 |
+
"candidates": [
|
| 108 |
+
{
|
| 109 |
+
"sample_id": "N158_AC",
|
| 110 |
+
"time_value": 1.0,
|
| 111 |
+
"time_raw": "AC",
|
| 112 |
+
"time_field": "timepoint",
|
| 113 |
+
"group": "AC"
|
| 114 |
+
}
|
| 115 |
+
]
|
| 116 |
+
},
|
| 117 |
+
{
|
| 118 |
+
"donor_id": "N129",
|
| 119 |
+
"assigned_stratum": false,
|
| 120 |
+
"selected_sample_id": "N129_BC",
|
| 121 |
+
"candidates": [
|
| 122 |
+
{
|
| 123 |
+
"sample_id": "N129_BC",
|
| 124 |
+
"time_value": 0.0,
|
| 125 |
+
"time_raw": "BC",
|
| 126 |
+
"time_field": "timepoint",
|
| 127 |
+
"group": "BC"
|
| 128 |
+
},
|
| 129 |
+
{
|
| 130 |
+
"sample_id": "N129_AC",
|
| 131 |
+
"time_value": 1.0,
|
| 132 |
+
"time_raw": "AC",
|
| 133 |
+
"time_field": "timepoint",
|
| 134 |
+
"group": "AC"
|
| 135 |
+
}
|
| 136 |
+
]
|
| 137 |
+
},
|
| 138 |
+
{
|
| 139 |
+
"donor_id": "N002",
|
| 140 |
+
"assigned_stratum": true,
|
| 141 |
+
"selected_sample_id": "N002_TOL",
|
| 142 |
+
"candidates": [
|
| 143 |
+
{
|
| 144 |
+
"sample_id": "N002_TOL",
|
| 145 |
+
"time_value": 0.0,
|
| 146 |
+
"time_raw": "TOL",
|
| 147 |
+
"time_field": "timepoint",
|
| 148 |
+
"group": "TOL"
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"sample_id": "N002_FU1",
|
| 152 |
+
"time_value": 1.0,
|
| 153 |
+
"time_raw": "FU1",
|
| 154 |
+
"time_field": "timepoint",
|
| 155 |
+
"group": "FU1"
|
| 156 |
+
}
|
| 157 |
+
]
|
| 158 |
+
},
|
| 159 |
+
{
|
| 160 |
+
"donor_id": "N064",
|
| 161 |
+
"assigned_stratum": true,
|
| 162 |
+
"selected_sample_id": "N064_TOL",
|
| 163 |
+
"candidates": [
|
| 164 |
+
{
|
| 165 |
+
"sample_id": "N064_TOL",
|
| 166 |
+
"time_value": 0.0,
|
| 167 |
+
"time_raw": "TOL",
|
| 168 |
+
"time_field": "timepoint",
|
| 169 |
+
"group": "TOL"
|
| 170 |
+
},
|
| 171 |
+
{
|
| 172 |
+
"sample_id": "N064_FU1",
|
| 173 |
+
"time_value": 1.0,
|
| 174 |
+
"time_raw": "FU1",
|
| 175 |
+
"time_field": "timepoint",
|
| 176 |
+
"group": "FU1"
|
| 177 |
+
}
|
| 178 |
+
]
|
| 179 |
+
}
|
| 180 |
+
],
|
| 181 |
+
"sha256": "f2d01b9433a50d6169032b65106820dbc52a98c5d2341e1cb66192c345df10ec"
|
| 182 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/d45f40def33c35ef/metrics.csv
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
dataset,design,unit,label,set,real_side,mode,n_real,n_gen,precision_k3,coverage_k3,density_k3,expected_coverage_identical_k3,precision_k5,coverage_k5,density_k5,expected_coverage_identical_k5,precision_k10,coverage_k10,density_k10,expected_coverage_identical_k10,c2st_knn_auc,c2st_knn_auc_sd,c2st_rf_auc,c2st_rf_auc_sd,nn1_acc,nn1_acc_real,nn1_acc_gen,mmd2_bw0.5,mmd2_bw1,mmd2_bw2,mmd2_sum,mmd_bandwidth_m,seconds
|
| 2 |
+
ye2026_sepsis,scored,strict,Real vs real control (held-out real cells),real_R2,R1,raw,11550,11550,0.872900432900433,0.9254545454545454,1.3425974025974028,0.8750324682351671,0.9400865800865801,0.9858874458874459,1.3337489177489177,0.9687702904505108,0.9817316017316017,0.9995670995670995,1.308995670995671,0.9990257609379009,0.5184360300594066,0.006338897989974107,0.5974047337943442,0.005666796096172938,0.5070562770562771,0.4195670995670996,0.5945454545454546,8.085885137126825e-05,8.319931006139925e-06,-5.102127531797507e-06,8.407665484561067e-05,27.505933508563906,40.5
|
| 3 |
+
ye2026_sepsis,scored,strict,Real vs real control (held-out real cells),real_R2,R1,dm,11550,11550,0.8707359307359307,0.9238961038961039,1.3402597402597403,0.8750324682351671,0.9386147186147186,0.9853679653679653,1.325021645021645,0.9687702904505108,0.9814718614718615,0.9997402597402597,1.3036796536796538,0.9990257609379009,0.5124055208860405,0.006471834836457688,0.5939513314967859,0.0063327819801291185,0.5070562770562771,0.42,0.5941125541125541,7.531887781742075e-05,6.925827320314326e-06,-5.586649500788354e-06,7.665805563694672e-05,27.505933508563906,40.3
|
| 4 |
+
ye2026_sepsis,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,11550,11550,,,,,,,,,,,,,0.5018675062311425,0.013136307157004905,0.4949952212289874,0.0069276750432021176,0.5015584415584415,0.4929004329004329,0.5102164502164502,-6.495590040922483e-05,-4.299230161564083e-05,-1.4753340649598101e-05,-0.00012270154267446376,27.505933508563906,35.5
|
| 5 |
+
ye2026_sepsis,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,11550,11550,,,,,,,,,,,,,0.49777779651805626,0.008632670154139136,0.49654790952193545,0.010385152737534662,0.4993073593073593,0.4925541125541126,0.5060606060606061,-6.678078863014969e-05,-4.3190468796305836e-05,-1.4601788539403415e-05,-0.00012457304596585894,27.505933508563906,35.3
|
| 6 |
+
ye2026_sepsis,scored,strict,,lora,R1,raw,11550,11550,0.6634632034632034,0.3877056277056277,0.6778643578643578,0.8750324682351671,0.7942857142857143,0.49956709956709955,0.7127619047619047,0.9687702904505108,0.915064935064935,0.6515151515151515,0.7504242424242424,0.9990257609379009,0.9451782387886285,0.0042379273874066006,0.9526149060175035,0.0033228853987977186,0.8615584415584415,0.8107359307359308,0.9123809523809524,0.04375414126629318,0.03167483254724002,0.010816841961201806,0.086245815774735,27.505933508563906,27.3
|
| 7 |
+
ye2026_sepsis,scored,strict,,lora,R1,dm,11550,11550,0.7019913419913419,0.5472727272727272,0.9363636363636362,0.8750324682351671,0.8114285714285714,0.6727272727272727,0.9717922077922078,0.9687702904505108,0.9204329004329004,0.8167965367965367,1.017809523809524,0.9990257609379009,0.9072327917392853,0.005407912128639079,0.930771893330335,0.0030632157685469667,0.8046320346320346,0.721991341991342,0.8872727272727273,0.03351343457845518,0.026266906205875795,0.009379380574329188,0.06915972135866016,27.505933508563906,27.3
|
| 8 |
+
ye2026_sepsis,scored,strict,,lora,R2,raw,11550,11550,,,,,,,,,,,,,0.9477266542980829,0.0009947082845849075,0.9522903431344989,0.004176877799104333,0.8648051948051948,0.8474458874458874,0.8821645021645022,0.04402937460166728,0.03188361899504599,0.010955005800114881,0.08686799939682815,27.505933508563906,24.9
|
| 9 |
+
ye2026_sepsis,scored,strict,,lora,R2,dm,11550,11550,,,,,,,,,,,,,0.9082343659226776,0.00281031881769277,0.9294617604617604,0.004858520525569154,0.801948051948052,0.7416450216450217,0.8622510822510823,0.0341949349141254,0.02667497343550207,0.009517896196553854,0.07038780454618132,27.505933508563906,25.1
|
| 10 |
+
ye2026_sepsis,scored,strict,,pairedcal,R1,raw,11550,11550,0.6166233766233766,0.17393939393939395,0.4932178932178932,0.8750324682351671,0.7673593073593074,0.2412987012987013,0.5342337662337663,0.9687702904505108,0.9027705627705628,0.3496103896103896,0.5603722943722944,0.9990257609379009,0.983688236727198,0.0017220968283768524,0.9894808568055321,0.0013799153047583483,0.9468398268398268,0.9196536796536796,0.974025974025974,0.10125223770211622,0.062185460418288985,0.01970900514650431,0.18314670326690952,27.505933508563906,27.9
|
| 11 |
+
ye2026_sepsis,scored,strict,,pairedcal,R1,dm,11550,11550,0.6469264069264069,0.33385281385281385,0.6943722943722944,0.8750324682351671,0.7799134199134199,0.4325541125541126,0.7367445887445887,0.9687702904505108,0.9082251082251083,0.5729870129870129,0.7977142857142857,0.9990257609379009,0.967185753640299,0.0022537462747663083,0.9790537658589606,0.0019319267652978611,0.8981385281385281,0.8412121212121212,0.9550649350649351,0.08211372430405989,0.05254366781976727,0.017380018316303092,0.15203741044013025,27.505933508563906,28.1
|
| 12 |
+
ye2026_sepsis,scored,strict,,pairedcal,R2,raw,11550,11550,,,,,,,,,,,,,0.9855903187721371,0.0016755697739997443,0.98996435599033,0.001183572423428446,0.947965367965368,0.9321212121212121,0.9638095238095238,0.10169432913408577,0.062321767287376595,0.019837833213408818,0.18385392963487118,27.505933508563906,25.9
|
| 13 |
+
ye2026_sepsis,scored,strict,,pairedcal,R2,dm,11550,11550,,,,,,,,,,,,,0.9689377073143307,0.003097361309211692,0.9804202320046475,0.0015177300431144392,0.9022077922077922,0.8567965367965368,0.9476190476190476,0.08321519423135726,0.05311604863714803,0.01756933555994422,0.1539005784284495,27.505933508563906,26.1
|
| 14 |
+
ye2026_sepsis,scored,strict,,scsemi,R1,raw,11550,11550,0.4338528138528139,0.0419047619047619,0.2268109668109668,0.8750324682351671,0.559047619047619,0.059134199134199136,0.2224761904761905,0.9687702904505108,0.7483982683982684,0.0825974025974026,0.22827705627705627,0.9990257609379009,0.9969929161747343,0.0007761309308357715,0.9995528944360113,7.311400825294632e-05,0.9889177489177489,0.9803463203463203,0.9974891774891775,0.22643482541367116,0.16113773310786716,0.05512460633348382,0.44269716485502214,27.505933508563906,28.1
|
| 15 |
+
ye2026_sepsis,scored,strict,,scsemi,R1,dm,11550,11550,0.21748917748917748,0.07471861471861471,0.12770562770562768,0.8750324682351671,0.3096103896103896,0.10874458874458874,0.13731601731601734,0.9687702904505108,0.449004329004329,0.1781818181818182,0.14935064935064934,0.9990257609379009,0.9955217106126197,0.0006502953841425537,0.9991948614156406,7.43298247750105e-05,0.9821645021645021,0.9694372294372294,0.9948917748917749,0.15263740150259741,0.09997524216068565,0.03382118906762255,0.2864338327309056,27.505933508563906,28.7
|
| 16 |
+
ye2026_sepsis,scored,strict,,scsemi,R2,raw,11550,11550,,,,,,,,,,,,,0.9976376379753003,0.0005531547344248719,0.9996518056258316,8.074891122797481e-05,0.991904761904762,0.9870995670995671,0.9967099567099567,0.22946251561423947,0.16249356483591404,0.05560252147796163,0.44755860192811514,27.505933508563906,25.2
|
| 17 |
+
ye2026_sepsis,scored,strict,,scsemi,R2,dm,11550,11550,,,,,,,,,,,,,0.9955727778714791,0.0005796373602214831,0.9993414666141938,6.966580373427745e-05,0.9837662337662337,0.9734199134199134,0.9941125541125541,0.15502420983232845,0.10090335603399714,0.03396329665691722,0.2898908625232428,27.505933508563906,26.9
|
| 18 |
+
ye2026_sepsis,scored,strict,,raw,R1,raw,11550,11550,0.29852813852813853,0.03645021645021645,0.16776334776334778,0.8750324682351671,0.42562770562770563,0.048484848484848485,0.19134199134199134,0.9687702904505108,0.6228571428571429,0.07454545454545454,0.22886580086580088,0.9990257609379009,0.9972559734637658,0.0006590452227418411,0.9990830569142257,0.00012263132634918094,0.9890909090909091,0.9833766233766233,0.9948051948051948,0.1529198904233166,0.19669539343438247,0.08399107037189557,0.43360635422959465,27.505933508563906,26.8
|
| 19 |
+
ye2026_sepsis,scored,strict,,raw,R1,dm,11550,11550,0.29125541125541127,0.03428571428571429,0.16294372294372295,0.8750324682351671,0.39090909090909093,0.04692640692640693,0.16992207792207792,0.9687702904505108,0.5688311688311688,0.07142857142857142,0.19352380952380951,0.9990257609379009,0.9972444294522216,0.0004722022612507425,0.998926800472255,0.00014951820525217527,0.9885714285714285,0.983982683982684,0.9931601731601731,0.15877319124540212,0.19819187606330368,0.08329652925513975,0.44026159656384556,27.505933508563906,26.7
|
| 20 |
+
ye2026_sepsis,scored,strict,,raw,R2,raw,11550,11550,,,,,,,,,,,,,0.9975448923371001,0.00033874445626557023,0.9990482749573658,0.00016716743332783872,0.9904329004329004,0.9883982683982684,0.9924675324675325,0.15819602438895636,0.1984988722016353,0.08422980651870393,0.4409247031092956,27.505933508563906,25.0
|
| 21 |
+
ye2026_sepsis,scored,strict,,raw,R2,dm,11550,11550,,,,,,,,,,,,,0.9977315642510447,0.00019922054644890168,0.9989208785442554,5.517105042670856e-05,0.9892640692640693,0.9886580086580087,0.9898701298701299,0.16333245454060308,0.19977661788065026,0.08348921719187441,0.44659828961312775,27.505933508563906,24.2
|
| 22 |
+
ye2026_sepsis,scored,strict,,refcal,R1,raw,11550,11550,0.4886580086580087,0.09238095238095238,0.28984126984126984,0.8750324682351671,0.6471861471861472,0.12692640692640692,0.3092987012987013,0.9687702904505108,0.8289177489177489,0.18545454545454546,0.32077056277056276,0.9990257609379009,0.9924142538558123,0.001324544612233817,0.9964017728303443,0.0005976810540020988,0.9704761904761905,0.9536796536796537,0.9872727272727273,0.1370087578796751,0.0838239406018022,0.02670108132530058,0.24753377980677788,27.505933508563906,28.1
|
| 23 |
+
ye2026_sepsis,scored,strict,,refcal,R1,dm,11550,11550,0.4649350649350649,0.19004329004329004,0.3133910533910534,0.8750324682351671,0.6131601731601731,0.26051948051948054,0.3322770562770563,0.9687702904505108,0.7916883116883117,0.3673593073593074,0.36397402597402595,0.9990257609379009,0.986415565675306,0.0015248832349607098,0.9913799591461929,0.0007880770227794061,0.9412987012987013,0.9148051948051948,0.9677922077922078,0.10268551740363435,0.06329313654558066,0.020922952437283593,0.1869016063864986,27.505933508563906,27.6
|
| 24 |
+
ye2026_sepsis,scored,strict,,refcal,R2,raw,11550,11550,,,,,,,,,,,,,0.9949575345289631,0.0007584089445242345,0.9968409325162572,0.00027231515200154977,0.9753246753246754,0.9683982683982684,0.9822510822510823,0.1375362017006233,0.08406944526364346,0.026881642109327863,0.24848728907359463,27.505933508563906,26.1
|
| 25 |
+
ye2026_sepsis,scored,strict,,refcal,R2,dm,11550,11550,,,,,,,,,,,,,0.9875447424148722,0.0002125676340112336,0.9920255617398475,0.0009864598925089403,0.9445454545454546,0.9249350649350649,0.9641558441558442,0.10415475951419007,0.06404045015808868,0.02114046743260789,0.18933567710488663,27.505933508563906,25.6
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/e905b8829d145e87/en.csv
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
dataset,design,unit,set,cellset,distance,n_samples,n_cells_real,n_cells_gen,n_pcs,lb,ub,dif_mean,en,lb_exact,lb_queries,n_representative_rows,en_reps_at_lb,seconds
|
| 2 |
+
ye2026_sepsis,scored,strict,real_R2,pc,sq,77,11550,11550,100,155.309314585819,309.34167017639265,186.43425339020268,0.2020675375965518,True,"[11550, 11550]",,,9.5
|
| 3 |
+
ye2026_sepsis,scored,strict,real_R2,pc,l2,77,11550,11550,100,12.17825085937637,16.88668985218123,13.202996343284623,0.21764017447697728,True,"[11550, 11550]",,,9.5
|
| 4 |
+
ye2026_sepsis,scored,strict,real_R2,all,sq,77,272286,272329,100,124.55660746880048,213.75424429732934,133.2798657661566,0.09779696646140393,False,"[20000, 20000]",,,70.2
|
| 5 |
+
ye2026_sepsis,scored,strict,real_R2,all,l2,77,272286,272329,100,10.929112839667921,14.233331951288877,11.27410919247648,0.10441085810417516,False,"[20000, 20000]",,,70.2
|
| 6 |
+
ye2026_sepsis,scored,strict,lora,pc,sq,77,11550,11550,100,191.79358443771196,295.9816052013052,316.4836146201315,1.1967789508675495,True,"[11550, 11550]",,,9.6
|
| 7 |
+
ye2026_sepsis,scored,strict,lora,pc,l2,77,11550,11550,100,13.508508358795513,16.53444541493591,17.34782474787488,1.268802462790301,True,"[11550, 11550]",,,9.6
|
| 8 |
+
ye2026_sepsis,scored,strict,lora,all,sq,77,544615,115500,100,133.82597043502926,201.55340481100023,235.7398921924189,1.5047657230250506,False,"[20000, 20000]",,,78.4
|
| 9 |
+
ye2026_sepsis,scored,strict,lora,all,l2,77,544615,115500,100,11.304897453581638,13.87273502750768,15.046911931979196,1.4572629189611406,False,"[20000, 20000]",,,78.4
|
| 10 |
+
ye2026_sepsis,scored,strict,pairedcal,pc,sq,77,11550,11550,100,172.0319851760944,296.757149841803,339.5099768693898,1.3427762724721504,True,"[11550, 11550]",,,9.6
|
| 11 |
+
ye2026_sepsis,scored,strict,pairedcal,pc,l2,77,11550,11550,100,12.816338729929992,16.553949519900375,18.00875194204761,1.3892332572591817,True,"[11550, 11550]",,,9.6
|
| 12 |
+
ye2026_sepsis,scored,strict,pairedcal,all,sq,77,544615,115500,100,127.85211842144793,201.4125262850479,271.95709196393733,1.959001828941695,False,"[20000, 20000]",,,81.4
|
| 13 |
+
ye2026_sepsis,scored,strict,pairedcal,all,l2,77,544615,115500,100,11.070725856842664,13.869411506955537,16.19147962564873,1.8296995121976423,False,"[20000, 20000]",,,81.4
|
| 14 |
+
ye2026_sepsis,scored,strict,scsemi,pc,sq,77,11550,11550,100,123.01623195849523,293.46880328012674,492.68237522528904,2.1687331578545734,True,"[11550, 11550]",,,8.9
|
| 15 |
+
ye2026_sepsis,scored,strict,scsemi,pc,l2,77,11550,11550,100,10.678957674718227,16.373833008216558,21.833479100745556,1.95869457587848,True,"[11550, 11550]",,,8.9
|
| 16 |
+
ye2026_sepsis,scored,strict,scsemi,all,sq,77,544615,115500,100,110.62785824438978,198.719644245738,442.41299609665293,3.766357261131988,False,"[20000, 20000]",,,73.7
|
| 17 |
+
ye2026_sepsis,scored,strict,scsemi,all,l2,77,544615,115500,100,10.186981674324539,13.74730015861621,20.67155827244046,2.9448423348569728,False,"[20000, 20000]",,,73.7
|
| 18 |
+
ye2026_sepsis,scored,strict,raw,pc,sq,77,11550,11550,100,240.47468221213174,268.59927620559824,635.097699463854,14.031243165444288,True,"[11550, 11550]",,,9.6
|
| 19 |
+
ye2026_sepsis,scored,strict,raw,pc,l2,77,11550,11550,100,14.817779978948396,15.675121035254065,24.645023150139558,11.462466539905721,True,"[11550, 11550]",,,9.6
|
| 20 |
+
ye2026_sepsis,scored,strict,raw,all,sq,77,544615,115500,100,141.06978641803073,197.17869202367729,444.5807326641466,5.409318591585073,False,"[20000, 20000]",,,78.4
|
| 21 |
+
ye2026_sepsis,scored,strict,raw,all,l2,77,544615,115500,100,11.530008698349798,13.713300249169611,20.824239324414112,4.256980989357277,False,"[20000, 20000]",,,78.4
|
| 22 |
+
ye2026_sepsis,scored,strict,refcal,pc,sq,77,11550,11550,100,176.39548423471942,293.7642071586965,391.89125902915595,1.836057932861884,True,"[11550, 11550]",,,9.2
|
| 23 |
+
ye2026_sepsis,scored,strict,refcal,pc,l2,77,11550,11550,100,12.983379056153156,16.451818251118237,19.42310215477368,1.8566631088613788,True,"[11550, 11550]",,,9.2
|
| 24 |
+
ye2026_sepsis,scored,strict,refcal,all,sq,77,544615,115500,100,128.11548587802474,200.91675629604484,318.1213274134776,2.609924805493803,False,"[20000, 20000]",,,74.3
|
| 25 |
+
ye2026_sepsis,scored,strict,refcal,all,l2,77,544615,115500,100,11.08277034277043,13.845700259512395,17.549700812730283,2.340606046781538,False,"[20000, 20000]",,,74.3
|