Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/scsemi_cv_20261002/pooled/cat.csv

@@ -0,0 +1,61 @@
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/scsemi_cv_20261002/pooled/ceiling.csv

@@ -0,0 +1,16 @@
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+giroux2022,scored,scsemi_cv_20261002/pooled,broadcast:conditions_pooled_raw.npz@1370617c,,Monocyte,3034.0,0.6640107322838724,0.009096883981758553,0.539371815224471,0.014516028713282069,0.6530218178944003,0.5238154899500747,0.664584875676205,0.5317631064971495,0.6581444221924742,0.5366198052137001,0.6675157082550832,0.542341630867846,0.6767868374011994,0.5623190435935848,,,,,,,,,,,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015
+giroux2022,scored,scsemi_cv_20261002/pooled,broadcast:conditions_pooled_raw.npz@1370617c,,NK cell,2931.0,0.5407171360374308,0.006485489030946017,0.4496009511847376,0.008928941058721437,0.5448802741154799,0.455187540510032,0.5320022613265573,0.437769643562357,0.5354992958232113,0.4422057263326938,0.5455088126660962,0.45644039334681047,0.5456950362558095,0.4564014521717947,,,,,,,,,,,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015
+giroux2022,scored,scsemi_cv_20261002/pooled,split_half_A_vs_B,,mean4,,0.8963310768143463,0.0008479133641406827,0.7850129413304465,0.003199371217261624,0.8965604203759056,0.7822002528755194,0.897317330163873,0.7889526703330123,0.8950231308406189,0.7822867495548855,0.8961169176090934,0.7837148444409874,0.896637585082241,0.787910189447828,0.9441432653258389,0.9714956476546757,0.8753556667368176,0.934909689565648,,,,,,,
+giroux2022,scored,scsemi_cv_20261002/pooled,generated:scsemi__raw,scsemi__raw,mean4,,0.5232362426424395,0.0019332057520961088,0.35071272131509595,0.001983546591883583,0.52350276913003,0.35247729572032643,0.5258867729104418,0.3510517542571529,0.5208645678971342,0.34732884445466533,0.5219439367630726,0.3516985398444989,0.5239831665115191,0.35100717229883627,,,,,,,,,,,
+giroux2022,scored,scsemi_cv_20261002/pooled,broadcast:conditions_pooled_raw.npz@1370617c,,mean4,,0.5605251826360979,0.004751509013579095,0.4712645207016532,0.0072351032973155946,0.5572361751582329,0.4670560815057632,0.5580417457638713,0.46640055057492147,0.5571382548371716,0.4681129802634971,0.5619501901422363,0.47091998599784224,0.5682595472789769,0.4838330051662417,,,,,,,,,,,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/scsemi_cv_20261002/pooled/contrast.csv

@@ -0,0 +1,11 @@
+dataset,design,unit,arm,celltype,statistic,label,n_genes,pearson_r_generated,spearman_r_generated,pearson_r_broadcast,spearman_r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,condition,condition_sha256,pearson_r_generated_scorer,pearson_r_broadcast_scorer,partial_r_generated_given_broadcast_scorer,r_generated_vs_broadcast_scorer
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,T cell,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",2886.0,0.5896983572148723,0.4973051043679765,0.5864764503055301,0.5137046185745339,0.41608350514079784,0.5118253037060416,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.5896983572148723,0.5864764503055301,0.4160835051407978,0.5118253037060416
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,T cell,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",2886.0,0.47668856642514423,0.4471696371253239,0.6077451868574512,0.5406572385492411,0.3059147485870827,0.421948813227649,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.4766885664251442,0.6077451868574512,0.3059147485870827,0.421948813227649
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,B cell,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",3030.0,0.4023801437336676,0.2014409649354061,0.48025603753384744,0.4160595867097935,0.2748298277172872,0.37190657777381525,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.4023801437336676,0.4802560375338474,0.2748298277172872,0.3719065777738152
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,B cell,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",3030.0,0.199437720590521,0.17337190293024077,0.4644022343428308,0.4073840878062634,0.09440310101549665,0.2553919598939267,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.199437720590521,0.4644022343428308,0.0944031010154966,0.2553919598939267
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,Monocyte,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",3034.0,0.6055701581942391,0.3332307440240624,0.6794468550874515,0.5822843980734358,0.4504975396560621,0.45907721684011676,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.6055701581942391,0.6794468550874515,0.4504975396560621,0.4590772168401167
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,Monocyte,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",3034.0,0.30911861040995087,0.24571179138596339,0.6731923266540611,0.5877699132162567,0.1674763590975495,0.28272449437038877,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.3091186104099508,0.6731923266540611,0.1674763590975495,0.2827244943703887
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,NK cell,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",2931.0,0.5515222487535836,0.39612090221478546,0.554884628817489,0.4715372337505029,0.41146669564200294,0.43994589539010526,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.5515222487535836,0.554884628817489,0.4114666956420029,0.4399458953901052
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,NK cell,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",2931.0,0.34077310726227117,0.3117762283405809,0.5368131432639086,0.48425117234266635,0.22347878449113212,0.2997164391765415,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.3407731072622711,0.5368131432639086,0.2234787844911321,0.2997164391765415
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,mean4,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",,0.5372927269740906,0.35702442888555763,0.5752659929360795,0.4958964592770665,0.38821939203903755,0.4456887484275197,,,0.5372927269740906,0.5752659929360795,0.38821939203903755,0.44568874842751965
+giroux2022,scored,scsemi_cv_20261002/pooled,scsemi__raw,mean4,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",,0.33150450117197183,0.2945073899455273,0.5705382227795629,0.5050156029786069,0.19781824829781525,0.3149454266671265,,,0.3315045011719718,0.5705382227795629,0.19781824829781522,0.3149454266671265

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ye2026_sepsis/scsemi_cv_20261002/pooled/repro.json

@@ -0,0 +1,21 @@
+{
+ "arms": {
+  "scsemi__raw": {
+   "contrast_max_abs_diff": 8.326672684688674e-17,
+   "contrast_all_equal": true,
+   "n_genes_equal": true,
+   "welch_lists_equal": true,
+   "welch_counts_equal": true,
+   "pass": true
+  }
+ },
+ "observed_split_half_full_aggregates": {
+  "n_equal": true,
+  "det_equal": true,
+  "sum_equal_float32": true,
+  "cp10k_max_abs_diff_float32": 0.0,
+  "cp10k_equal_float32": true
+ },
+ "comparable_with_scorer": true,
+ "all_pass": true
+}