Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw2/support.json +254 -0
- paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw3/support.json +254 -0
- paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw4/support.json +254 -0
- paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/receipts/ye2026_sepsis-disease-draw0-score.json +143 -0
paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw2/support.json
ADDED
|
@@ -0,0 +1,254 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "ye2026_sepsis",
|
| 4 |
+
"design": "disease_existing_draw",
|
| 5 |
+
"unit": "draw2_n5",
|
| 6 |
+
"n_pairs": 5,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"PIC01",
|
| 9 |
+
"Res-S177",
|
| 10 |
+
"Skin-S74",
|
| 11 |
+
"Res-S136",
|
| 12 |
+
"Res-S77"
|
| 13 |
+
],
|
| 14 |
+
"train_donor_ids": [
|
| 15 |
+
"PIC01",
|
| 16 |
+
"Res-S177",
|
| 17 |
+
"Skin-S74",
|
| 18 |
+
"Res-S136",
|
| 19 |
+
"Res-S77"
|
| 20 |
+
],
|
| 21 |
+
"test_sample_ids": [
|
| 22 |
+
"Abd-PS04",
|
| 23 |
+
"Abd-PS05",
|
| 24 |
+
"Abd-PS07",
|
| 25 |
+
"Abd-PS19",
|
| 26 |
+
"Abd-PS20",
|
| 27 |
+
"Abd-PS23",
|
| 28 |
+
"Abd-PS27",
|
| 29 |
+
"Abd-S102",
|
| 30 |
+
"Abd-S103",
|
| 31 |
+
"Abd-S120",
|
| 32 |
+
"Abd-S123",
|
| 33 |
+
"Abd-S156",
|
| 34 |
+
"Abd-S39",
|
| 35 |
+
"Abd-S42",
|
| 36 |
+
"Abd-S47",
|
| 37 |
+
"Abd-S51",
|
| 38 |
+
"Abd-S54",
|
| 39 |
+
"Abd-S57",
|
| 40 |
+
"Abd-S66",
|
| 41 |
+
"Abd-S79",
|
| 42 |
+
"Abd-S83",
|
| 43 |
+
"Abd-S98",
|
| 44 |
+
"HC01",
|
| 45 |
+
"HC05",
|
| 46 |
+
"HC07",
|
| 47 |
+
"HC09",
|
| 48 |
+
"HC12",
|
| 49 |
+
"HC13",
|
| 50 |
+
"HC16",
|
| 51 |
+
"IC10",
|
| 52 |
+
"IC15",
|
| 53 |
+
"IC16",
|
| 54 |
+
"IC19",
|
| 55 |
+
"IC22",
|
| 56 |
+
"IC23",
|
| 57 |
+
"PHC01",
|
| 58 |
+
"PHC02",
|
| 59 |
+
"PHC03",
|
| 60 |
+
"PHC05",
|
| 61 |
+
"PIC02",
|
| 62 |
+
"PIC04",
|
| 63 |
+
"PIC05",
|
| 64 |
+
"Res-PS02",
|
| 65 |
+
"Res-PS03",
|
| 66 |
+
"Res-PS12",
|
| 67 |
+
"Res-PS16",
|
| 68 |
+
"Res-PS21",
|
| 69 |
+
"Res-PS22",
|
| 70 |
+
"Res-PS25",
|
| 71 |
+
"Res-PS26",
|
| 72 |
+
"Res-S10",
|
| 73 |
+
"Res-S125",
|
| 74 |
+
"Res-S127",
|
| 75 |
+
"Res-S139",
|
| 76 |
+
"Res-S146",
|
| 77 |
+
"Res-S149",
|
| 78 |
+
"Res-S150",
|
| 79 |
+
"Res-S164",
|
| 80 |
+
"Res-S166",
|
| 81 |
+
"Res-S174",
|
| 82 |
+
"Res-S184",
|
| 83 |
+
"Res-S19",
|
| 84 |
+
"Res-S26",
|
| 85 |
+
"Res-S40",
|
| 86 |
+
"Res-S87",
|
| 87 |
+
"Skin-S140",
|
| 88 |
+
"Skin-S142",
|
| 89 |
+
"Skin-S152",
|
| 90 |
+
"Skin-S38",
|
| 91 |
+
"Skin-S43",
|
| 92 |
+
"Skin-S46",
|
| 93 |
+
"Skin-S52",
|
| 94 |
+
"Uri-S134",
|
| 95 |
+
"Uri-S147",
|
| 96 |
+
"Uri-S157",
|
| 97 |
+
"Uri-S20",
|
| 98 |
+
"Uri-S93"
|
| 99 |
+
],
|
| 100 |
+
"test_donor_ids": [
|
| 101 |
+
"Abd-PS04",
|
| 102 |
+
"Abd-PS05",
|
| 103 |
+
"Abd-PS07",
|
| 104 |
+
"Abd-PS19",
|
| 105 |
+
"Abd-PS20",
|
| 106 |
+
"Abd-PS23",
|
| 107 |
+
"Abd-PS27",
|
| 108 |
+
"Abd-S102",
|
| 109 |
+
"Abd-S103",
|
| 110 |
+
"Abd-S120",
|
| 111 |
+
"Abd-S123",
|
| 112 |
+
"Abd-S156",
|
| 113 |
+
"Abd-S39",
|
| 114 |
+
"Abd-S42",
|
| 115 |
+
"Abd-S47",
|
| 116 |
+
"Abd-S51",
|
| 117 |
+
"Abd-S54",
|
| 118 |
+
"Abd-S57",
|
| 119 |
+
"Abd-S66",
|
| 120 |
+
"Abd-S79",
|
| 121 |
+
"Abd-S83",
|
| 122 |
+
"Abd-S98",
|
| 123 |
+
"HC01",
|
| 124 |
+
"HC05",
|
| 125 |
+
"HC07",
|
| 126 |
+
"HC09",
|
| 127 |
+
"HC12",
|
| 128 |
+
"HC13",
|
| 129 |
+
"HC16",
|
| 130 |
+
"IC10",
|
| 131 |
+
"IC15",
|
| 132 |
+
"IC16",
|
| 133 |
+
"IC19",
|
| 134 |
+
"IC22",
|
| 135 |
+
"IC23",
|
| 136 |
+
"PHC01",
|
| 137 |
+
"PHC02",
|
| 138 |
+
"PHC03",
|
| 139 |
+
"PHC05",
|
| 140 |
+
"PIC02",
|
| 141 |
+
"PIC04",
|
| 142 |
+
"PIC05",
|
| 143 |
+
"Res-PS02",
|
| 144 |
+
"Res-PS03",
|
| 145 |
+
"Res-PS12",
|
| 146 |
+
"Res-PS16",
|
| 147 |
+
"Res-PS21",
|
| 148 |
+
"Res-PS22",
|
| 149 |
+
"Res-PS25",
|
| 150 |
+
"Res-PS26",
|
| 151 |
+
"Res-S10",
|
| 152 |
+
"Res-S125",
|
| 153 |
+
"Res-S127",
|
| 154 |
+
"Res-S139",
|
| 155 |
+
"Res-S146",
|
| 156 |
+
"Res-S149",
|
| 157 |
+
"Res-S150",
|
| 158 |
+
"Res-S164",
|
| 159 |
+
"Res-S166",
|
| 160 |
+
"Res-S174",
|
| 161 |
+
"Res-S184",
|
| 162 |
+
"Res-S19",
|
| 163 |
+
"Res-S26",
|
| 164 |
+
"Res-S40",
|
| 165 |
+
"Res-S87",
|
| 166 |
+
"Skin-S140",
|
| 167 |
+
"Skin-S142",
|
| 168 |
+
"Skin-S152",
|
| 169 |
+
"Skin-S38",
|
| 170 |
+
"Skin-S43",
|
| 171 |
+
"Skin-S46",
|
| 172 |
+
"Skin-S52",
|
| 173 |
+
"Uri-S134",
|
| 174 |
+
"Uri-S147",
|
| 175 |
+
"Uri-S157",
|
| 176 |
+
"Uri-S20",
|
| 177 |
+
"Uri-S93"
|
| 178 |
+
],
|
| 179 |
+
"excluded_sample_ids": [],
|
| 180 |
+
"seed": null,
|
| 181 |
+
"selection_audit": [
|
| 182 |
+
{
|
| 183 |
+
"donor_id": "PIC01",
|
| 184 |
+
"assigned_stratum": false,
|
| 185 |
+
"selected_sample_id": "PIC01",
|
| 186 |
+
"candidates": [
|
| 187 |
+
{
|
| 188 |
+
"sample_id": "PIC01",
|
| 189 |
+
"time_value": 0.0,
|
| 190 |
+
"time_raw": "none (single sample per donor)",
|
| 191 |
+
"time_field": "timepoint",
|
| 192 |
+
"group": "ped_ICU_ctrl"
|
| 193 |
+
}
|
| 194 |
+
]
|
| 195 |
+
},
|
| 196 |
+
{
|
| 197 |
+
"donor_id": "Res-S177",
|
| 198 |
+
"assigned_stratum": true,
|
| 199 |
+
"selected_sample_id": "Res-S177",
|
| 200 |
+
"candidates": [
|
| 201 |
+
{
|
| 202 |
+
"sample_id": "Res-S177",
|
| 203 |
+
"time_value": 0.0,
|
| 204 |
+
"time_raw": "none (single sample per donor)",
|
| 205 |
+
"time_field": "timepoint",
|
| 206 |
+
"group": "adult_sepsis"
|
| 207 |
+
}
|
| 208 |
+
]
|
| 209 |
+
},
|
| 210 |
+
{
|
| 211 |
+
"donor_id": "Skin-S74",
|
| 212 |
+
"assigned_stratum": true,
|
| 213 |
+
"selected_sample_id": "Skin-S74",
|
| 214 |
+
"candidates": [
|
| 215 |
+
{
|
| 216 |
+
"sample_id": "Skin-S74",
|
| 217 |
+
"time_value": 0.0,
|
| 218 |
+
"time_raw": "none (single sample per donor)",
|
| 219 |
+
"time_field": "timepoint",
|
| 220 |
+
"group": "adult_sepsis"
|
| 221 |
+
}
|
| 222 |
+
]
|
| 223 |
+
},
|
| 224 |
+
{
|
| 225 |
+
"donor_id": "Res-S136",
|
| 226 |
+
"assigned_stratum": true,
|
| 227 |
+
"selected_sample_id": "Res-S136",
|
| 228 |
+
"candidates": [
|
| 229 |
+
{
|
| 230 |
+
"sample_id": "Res-S136",
|
| 231 |
+
"time_value": 0.0,
|
| 232 |
+
"time_raw": "none (single sample per donor)",
|
| 233 |
+
"time_field": "timepoint",
|
| 234 |
+
"group": "adult_sepsis"
|
| 235 |
+
}
|
| 236 |
+
]
|
| 237 |
+
},
|
| 238 |
+
{
|
| 239 |
+
"donor_id": "Res-S77",
|
| 240 |
+
"assigned_stratum": true,
|
| 241 |
+
"selected_sample_id": "Res-S77",
|
| 242 |
+
"candidates": [
|
| 243 |
+
{
|
| 244 |
+
"sample_id": "Res-S77",
|
| 245 |
+
"time_value": 0.0,
|
| 246 |
+
"time_raw": "none (single sample per donor)",
|
| 247 |
+
"time_field": "timepoint",
|
| 248 |
+
"group": "adult_sepsis"
|
| 249 |
+
}
|
| 250 |
+
]
|
| 251 |
+
}
|
| 252 |
+
],
|
| 253 |
+
"sha256": "ea331f967a3a212b91cd144bd8ba62cea3cbfe3bdcc9e77268e190757327b0e2"
|
| 254 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw3/support.json
ADDED
|
@@ -0,0 +1,254 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "ye2026_sepsis",
|
| 4 |
+
"design": "disease_existing_draw",
|
| 5 |
+
"unit": "draw3_n5",
|
| 6 |
+
"n_pairs": 5,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"PHC05",
|
| 9 |
+
"Res-S139",
|
| 10 |
+
"Res-S174",
|
| 11 |
+
"Skin-S142",
|
| 12 |
+
"Abd-S57"
|
| 13 |
+
],
|
| 14 |
+
"train_donor_ids": [
|
| 15 |
+
"PHC05",
|
| 16 |
+
"Res-S139",
|
| 17 |
+
"Res-S174",
|
| 18 |
+
"Skin-S142",
|
| 19 |
+
"Abd-S57"
|
| 20 |
+
],
|
| 21 |
+
"test_sample_ids": [
|
| 22 |
+
"Abd-PS04",
|
| 23 |
+
"Abd-PS05",
|
| 24 |
+
"Abd-PS07",
|
| 25 |
+
"Abd-PS19",
|
| 26 |
+
"Abd-PS20",
|
| 27 |
+
"Abd-PS23",
|
| 28 |
+
"Abd-PS27",
|
| 29 |
+
"Abd-S102",
|
| 30 |
+
"Abd-S103",
|
| 31 |
+
"Abd-S120",
|
| 32 |
+
"Abd-S123",
|
| 33 |
+
"Abd-S156",
|
| 34 |
+
"Abd-S39",
|
| 35 |
+
"Abd-S42",
|
| 36 |
+
"Abd-S47",
|
| 37 |
+
"Abd-S51",
|
| 38 |
+
"Abd-S54",
|
| 39 |
+
"Abd-S66",
|
| 40 |
+
"Abd-S79",
|
| 41 |
+
"Abd-S83",
|
| 42 |
+
"Abd-S98",
|
| 43 |
+
"HC01",
|
| 44 |
+
"HC05",
|
| 45 |
+
"HC07",
|
| 46 |
+
"HC09",
|
| 47 |
+
"HC12",
|
| 48 |
+
"HC13",
|
| 49 |
+
"HC16",
|
| 50 |
+
"IC10",
|
| 51 |
+
"IC15",
|
| 52 |
+
"IC16",
|
| 53 |
+
"IC19",
|
| 54 |
+
"IC22",
|
| 55 |
+
"IC23",
|
| 56 |
+
"PHC01",
|
| 57 |
+
"PHC02",
|
| 58 |
+
"PHC03",
|
| 59 |
+
"PIC01",
|
| 60 |
+
"PIC02",
|
| 61 |
+
"PIC04",
|
| 62 |
+
"PIC05",
|
| 63 |
+
"Res-PS02",
|
| 64 |
+
"Res-PS03",
|
| 65 |
+
"Res-PS12",
|
| 66 |
+
"Res-PS16",
|
| 67 |
+
"Res-PS21",
|
| 68 |
+
"Res-PS22",
|
| 69 |
+
"Res-PS25",
|
| 70 |
+
"Res-PS26",
|
| 71 |
+
"Res-S10",
|
| 72 |
+
"Res-S125",
|
| 73 |
+
"Res-S127",
|
| 74 |
+
"Res-S136",
|
| 75 |
+
"Res-S146",
|
| 76 |
+
"Res-S149",
|
| 77 |
+
"Res-S150",
|
| 78 |
+
"Res-S164",
|
| 79 |
+
"Res-S166",
|
| 80 |
+
"Res-S177",
|
| 81 |
+
"Res-S184",
|
| 82 |
+
"Res-S19",
|
| 83 |
+
"Res-S26",
|
| 84 |
+
"Res-S40",
|
| 85 |
+
"Res-S77",
|
| 86 |
+
"Res-S87",
|
| 87 |
+
"Skin-S140",
|
| 88 |
+
"Skin-S152",
|
| 89 |
+
"Skin-S38",
|
| 90 |
+
"Skin-S43",
|
| 91 |
+
"Skin-S46",
|
| 92 |
+
"Skin-S52",
|
| 93 |
+
"Skin-S74",
|
| 94 |
+
"Uri-S134",
|
| 95 |
+
"Uri-S147",
|
| 96 |
+
"Uri-S157",
|
| 97 |
+
"Uri-S20",
|
| 98 |
+
"Uri-S93"
|
| 99 |
+
],
|
| 100 |
+
"test_donor_ids": [
|
| 101 |
+
"Abd-PS04",
|
| 102 |
+
"Abd-PS05",
|
| 103 |
+
"Abd-PS07",
|
| 104 |
+
"Abd-PS19",
|
| 105 |
+
"Abd-PS20",
|
| 106 |
+
"Abd-PS23",
|
| 107 |
+
"Abd-PS27",
|
| 108 |
+
"Abd-S102",
|
| 109 |
+
"Abd-S103",
|
| 110 |
+
"Abd-S120",
|
| 111 |
+
"Abd-S123",
|
| 112 |
+
"Abd-S156",
|
| 113 |
+
"Abd-S39",
|
| 114 |
+
"Abd-S42",
|
| 115 |
+
"Abd-S47",
|
| 116 |
+
"Abd-S51",
|
| 117 |
+
"Abd-S54",
|
| 118 |
+
"Abd-S66",
|
| 119 |
+
"Abd-S79",
|
| 120 |
+
"Abd-S83",
|
| 121 |
+
"Abd-S98",
|
| 122 |
+
"HC01",
|
| 123 |
+
"HC05",
|
| 124 |
+
"HC07",
|
| 125 |
+
"HC09",
|
| 126 |
+
"HC12",
|
| 127 |
+
"HC13",
|
| 128 |
+
"HC16",
|
| 129 |
+
"IC10",
|
| 130 |
+
"IC15",
|
| 131 |
+
"IC16",
|
| 132 |
+
"IC19",
|
| 133 |
+
"IC22",
|
| 134 |
+
"IC23",
|
| 135 |
+
"PHC01",
|
| 136 |
+
"PHC02",
|
| 137 |
+
"PHC03",
|
| 138 |
+
"PIC01",
|
| 139 |
+
"PIC02",
|
| 140 |
+
"PIC04",
|
| 141 |
+
"PIC05",
|
| 142 |
+
"Res-PS02",
|
| 143 |
+
"Res-PS03",
|
| 144 |
+
"Res-PS12",
|
| 145 |
+
"Res-PS16",
|
| 146 |
+
"Res-PS21",
|
| 147 |
+
"Res-PS22",
|
| 148 |
+
"Res-PS25",
|
| 149 |
+
"Res-PS26",
|
| 150 |
+
"Res-S10",
|
| 151 |
+
"Res-S125",
|
| 152 |
+
"Res-S127",
|
| 153 |
+
"Res-S136",
|
| 154 |
+
"Res-S146",
|
| 155 |
+
"Res-S149",
|
| 156 |
+
"Res-S150",
|
| 157 |
+
"Res-S164",
|
| 158 |
+
"Res-S166",
|
| 159 |
+
"Res-S177",
|
| 160 |
+
"Res-S184",
|
| 161 |
+
"Res-S19",
|
| 162 |
+
"Res-S26",
|
| 163 |
+
"Res-S40",
|
| 164 |
+
"Res-S77",
|
| 165 |
+
"Res-S87",
|
| 166 |
+
"Skin-S140",
|
| 167 |
+
"Skin-S152",
|
| 168 |
+
"Skin-S38",
|
| 169 |
+
"Skin-S43",
|
| 170 |
+
"Skin-S46",
|
| 171 |
+
"Skin-S52",
|
| 172 |
+
"Skin-S74",
|
| 173 |
+
"Uri-S134",
|
| 174 |
+
"Uri-S147",
|
| 175 |
+
"Uri-S157",
|
| 176 |
+
"Uri-S20",
|
| 177 |
+
"Uri-S93"
|
| 178 |
+
],
|
| 179 |
+
"excluded_sample_ids": [],
|
| 180 |
+
"seed": null,
|
| 181 |
+
"selection_audit": [
|
| 182 |
+
{
|
| 183 |
+
"donor_id": "PHC05",
|
| 184 |
+
"assigned_stratum": false,
|
| 185 |
+
"selected_sample_id": "PHC05",
|
| 186 |
+
"candidates": [
|
| 187 |
+
{
|
| 188 |
+
"sample_id": "PHC05",
|
| 189 |
+
"time_value": 0.0,
|
| 190 |
+
"time_raw": "none (single sample per donor)",
|
| 191 |
+
"time_field": "timepoint",
|
| 192 |
+
"group": "ped_HC"
|
| 193 |
+
}
|
| 194 |
+
]
|
| 195 |
+
},
|
| 196 |
+
{
|
| 197 |
+
"donor_id": "Res-S139",
|
| 198 |
+
"assigned_stratum": true,
|
| 199 |
+
"selected_sample_id": "Res-S139",
|
| 200 |
+
"candidates": [
|
| 201 |
+
{
|
| 202 |
+
"sample_id": "Res-S139",
|
| 203 |
+
"time_value": 0.0,
|
| 204 |
+
"time_raw": "none (single sample per donor)",
|
| 205 |
+
"time_field": "timepoint",
|
| 206 |
+
"group": "adult_sepsis"
|
| 207 |
+
}
|
| 208 |
+
]
|
| 209 |
+
},
|
| 210 |
+
{
|
| 211 |
+
"donor_id": "Res-S174",
|
| 212 |
+
"assigned_stratum": true,
|
| 213 |
+
"selected_sample_id": "Res-S174",
|
| 214 |
+
"candidates": [
|
| 215 |
+
{
|
| 216 |
+
"sample_id": "Res-S174",
|
| 217 |
+
"time_value": 0.0,
|
| 218 |
+
"time_raw": "none (single sample per donor)",
|
| 219 |
+
"time_field": "timepoint",
|
| 220 |
+
"group": "adult_sepsis"
|
| 221 |
+
}
|
| 222 |
+
]
|
| 223 |
+
},
|
| 224 |
+
{
|
| 225 |
+
"donor_id": "Skin-S142",
|
| 226 |
+
"assigned_stratum": true,
|
| 227 |
+
"selected_sample_id": "Skin-S142",
|
| 228 |
+
"candidates": [
|
| 229 |
+
{
|
| 230 |
+
"sample_id": "Skin-S142",
|
| 231 |
+
"time_value": 0.0,
|
| 232 |
+
"time_raw": "none (single sample per donor)",
|
| 233 |
+
"time_field": "timepoint",
|
| 234 |
+
"group": "adult_sepsis"
|
| 235 |
+
}
|
| 236 |
+
]
|
| 237 |
+
},
|
| 238 |
+
{
|
| 239 |
+
"donor_id": "Abd-S57",
|
| 240 |
+
"assigned_stratum": true,
|
| 241 |
+
"selected_sample_id": "Abd-S57",
|
| 242 |
+
"candidates": [
|
| 243 |
+
{
|
| 244 |
+
"sample_id": "Abd-S57",
|
| 245 |
+
"time_value": 0.0,
|
| 246 |
+
"time_raw": "none (single sample per donor)",
|
| 247 |
+
"time_field": "timepoint",
|
| 248 |
+
"group": "adult_sepsis"
|
| 249 |
+
}
|
| 250 |
+
]
|
| 251 |
+
}
|
| 252 |
+
],
|
| 253 |
+
"sha256": "ab2ccffd21a8efa2b23ed420fbcdf06d9ac3c8045649e69b11388a9af0d13cc4"
|
| 254 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw4/support.json
ADDED
|
@@ -0,0 +1,254 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "ye2026_sepsis",
|
| 4 |
+
"design": "disease_existing_draw",
|
| 5 |
+
"unit": "draw4_n5",
|
| 6 |
+
"n_pairs": 5,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"IC23",
|
| 9 |
+
"Skin-S142",
|
| 10 |
+
"Res-PS22",
|
| 11 |
+
"Abd-S102",
|
| 12 |
+
"Skin-S46"
|
| 13 |
+
],
|
| 14 |
+
"train_donor_ids": [
|
| 15 |
+
"IC23",
|
| 16 |
+
"Skin-S142",
|
| 17 |
+
"Res-PS22",
|
| 18 |
+
"Abd-S102",
|
| 19 |
+
"Skin-S46"
|
| 20 |
+
],
|
| 21 |
+
"test_sample_ids": [
|
| 22 |
+
"Abd-PS04",
|
| 23 |
+
"Abd-PS05",
|
| 24 |
+
"Abd-PS07",
|
| 25 |
+
"Abd-PS19",
|
| 26 |
+
"Abd-PS20",
|
| 27 |
+
"Abd-PS23",
|
| 28 |
+
"Abd-PS27",
|
| 29 |
+
"Abd-S103",
|
| 30 |
+
"Abd-S120",
|
| 31 |
+
"Abd-S123",
|
| 32 |
+
"Abd-S156",
|
| 33 |
+
"Abd-S39",
|
| 34 |
+
"Abd-S42",
|
| 35 |
+
"Abd-S47",
|
| 36 |
+
"Abd-S51",
|
| 37 |
+
"Abd-S54",
|
| 38 |
+
"Abd-S57",
|
| 39 |
+
"Abd-S66",
|
| 40 |
+
"Abd-S79",
|
| 41 |
+
"Abd-S83",
|
| 42 |
+
"Abd-S98",
|
| 43 |
+
"HC01",
|
| 44 |
+
"HC05",
|
| 45 |
+
"HC07",
|
| 46 |
+
"HC09",
|
| 47 |
+
"HC12",
|
| 48 |
+
"HC13",
|
| 49 |
+
"HC16",
|
| 50 |
+
"IC10",
|
| 51 |
+
"IC15",
|
| 52 |
+
"IC16",
|
| 53 |
+
"IC19",
|
| 54 |
+
"IC22",
|
| 55 |
+
"PHC01",
|
| 56 |
+
"PHC02",
|
| 57 |
+
"PHC03",
|
| 58 |
+
"PHC05",
|
| 59 |
+
"PIC01",
|
| 60 |
+
"PIC02",
|
| 61 |
+
"PIC04",
|
| 62 |
+
"PIC05",
|
| 63 |
+
"Res-PS02",
|
| 64 |
+
"Res-PS03",
|
| 65 |
+
"Res-PS12",
|
| 66 |
+
"Res-PS16",
|
| 67 |
+
"Res-PS21",
|
| 68 |
+
"Res-PS25",
|
| 69 |
+
"Res-PS26",
|
| 70 |
+
"Res-S10",
|
| 71 |
+
"Res-S125",
|
| 72 |
+
"Res-S127",
|
| 73 |
+
"Res-S136",
|
| 74 |
+
"Res-S139",
|
| 75 |
+
"Res-S146",
|
| 76 |
+
"Res-S149",
|
| 77 |
+
"Res-S150",
|
| 78 |
+
"Res-S164",
|
| 79 |
+
"Res-S166",
|
| 80 |
+
"Res-S174",
|
| 81 |
+
"Res-S177",
|
| 82 |
+
"Res-S184",
|
| 83 |
+
"Res-S19",
|
| 84 |
+
"Res-S26",
|
| 85 |
+
"Res-S40",
|
| 86 |
+
"Res-S77",
|
| 87 |
+
"Res-S87",
|
| 88 |
+
"Skin-S140",
|
| 89 |
+
"Skin-S152",
|
| 90 |
+
"Skin-S38",
|
| 91 |
+
"Skin-S43",
|
| 92 |
+
"Skin-S52",
|
| 93 |
+
"Skin-S74",
|
| 94 |
+
"Uri-S134",
|
| 95 |
+
"Uri-S147",
|
| 96 |
+
"Uri-S157",
|
| 97 |
+
"Uri-S20",
|
| 98 |
+
"Uri-S93"
|
| 99 |
+
],
|
| 100 |
+
"test_donor_ids": [
|
| 101 |
+
"Abd-PS04",
|
| 102 |
+
"Abd-PS05",
|
| 103 |
+
"Abd-PS07",
|
| 104 |
+
"Abd-PS19",
|
| 105 |
+
"Abd-PS20",
|
| 106 |
+
"Abd-PS23",
|
| 107 |
+
"Abd-PS27",
|
| 108 |
+
"Abd-S103",
|
| 109 |
+
"Abd-S120",
|
| 110 |
+
"Abd-S123",
|
| 111 |
+
"Abd-S156",
|
| 112 |
+
"Abd-S39",
|
| 113 |
+
"Abd-S42",
|
| 114 |
+
"Abd-S47",
|
| 115 |
+
"Abd-S51",
|
| 116 |
+
"Abd-S54",
|
| 117 |
+
"Abd-S57",
|
| 118 |
+
"Abd-S66",
|
| 119 |
+
"Abd-S79",
|
| 120 |
+
"Abd-S83",
|
| 121 |
+
"Abd-S98",
|
| 122 |
+
"HC01",
|
| 123 |
+
"HC05",
|
| 124 |
+
"HC07",
|
| 125 |
+
"HC09",
|
| 126 |
+
"HC12",
|
| 127 |
+
"HC13",
|
| 128 |
+
"HC16",
|
| 129 |
+
"IC10",
|
| 130 |
+
"IC15",
|
| 131 |
+
"IC16",
|
| 132 |
+
"IC19",
|
| 133 |
+
"IC22",
|
| 134 |
+
"PHC01",
|
| 135 |
+
"PHC02",
|
| 136 |
+
"PHC03",
|
| 137 |
+
"PHC05",
|
| 138 |
+
"PIC01",
|
| 139 |
+
"PIC02",
|
| 140 |
+
"PIC04",
|
| 141 |
+
"PIC05",
|
| 142 |
+
"Res-PS02",
|
| 143 |
+
"Res-PS03",
|
| 144 |
+
"Res-PS12",
|
| 145 |
+
"Res-PS16",
|
| 146 |
+
"Res-PS21",
|
| 147 |
+
"Res-PS25",
|
| 148 |
+
"Res-PS26",
|
| 149 |
+
"Res-S10",
|
| 150 |
+
"Res-S125",
|
| 151 |
+
"Res-S127",
|
| 152 |
+
"Res-S136",
|
| 153 |
+
"Res-S139",
|
| 154 |
+
"Res-S146",
|
| 155 |
+
"Res-S149",
|
| 156 |
+
"Res-S150",
|
| 157 |
+
"Res-S164",
|
| 158 |
+
"Res-S166",
|
| 159 |
+
"Res-S174",
|
| 160 |
+
"Res-S177",
|
| 161 |
+
"Res-S184",
|
| 162 |
+
"Res-S19",
|
| 163 |
+
"Res-S26",
|
| 164 |
+
"Res-S40",
|
| 165 |
+
"Res-S77",
|
| 166 |
+
"Res-S87",
|
| 167 |
+
"Skin-S140",
|
| 168 |
+
"Skin-S152",
|
| 169 |
+
"Skin-S38",
|
| 170 |
+
"Skin-S43",
|
| 171 |
+
"Skin-S52",
|
| 172 |
+
"Skin-S74",
|
| 173 |
+
"Uri-S134",
|
| 174 |
+
"Uri-S147",
|
| 175 |
+
"Uri-S157",
|
| 176 |
+
"Uri-S20",
|
| 177 |
+
"Uri-S93"
|
| 178 |
+
],
|
| 179 |
+
"excluded_sample_ids": [],
|
| 180 |
+
"seed": null,
|
| 181 |
+
"selection_audit": [
|
| 182 |
+
{
|
| 183 |
+
"donor_id": "IC23",
|
| 184 |
+
"assigned_stratum": false,
|
| 185 |
+
"selected_sample_id": "IC23",
|
| 186 |
+
"candidates": [
|
| 187 |
+
{
|
| 188 |
+
"sample_id": "IC23",
|
| 189 |
+
"time_value": 0.0,
|
| 190 |
+
"time_raw": "none (single sample per donor)",
|
| 191 |
+
"time_field": "timepoint",
|
| 192 |
+
"group": "adult_ICU_ctrl"
|
| 193 |
+
}
|
| 194 |
+
]
|
| 195 |
+
},
|
| 196 |
+
{
|
| 197 |
+
"donor_id": "Skin-S142",
|
| 198 |
+
"assigned_stratum": true,
|
| 199 |
+
"selected_sample_id": "Skin-S142",
|
| 200 |
+
"candidates": [
|
| 201 |
+
{
|
| 202 |
+
"sample_id": "Skin-S142",
|
| 203 |
+
"time_value": 0.0,
|
| 204 |
+
"time_raw": "none (single sample per donor)",
|
| 205 |
+
"time_field": "timepoint",
|
| 206 |
+
"group": "adult_sepsis"
|
| 207 |
+
}
|
| 208 |
+
]
|
| 209 |
+
},
|
| 210 |
+
{
|
| 211 |
+
"donor_id": "Res-PS22",
|
| 212 |
+
"assigned_stratum": true,
|
| 213 |
+
"selected_sample_id": "Res-PS22",
|
| 214 |
+
"candidates": [
|
| 215 |
+
{
|
| 216 |
+
"sample_id": "Res-PS22",
|
| 217 |
+
"time_value": 0.0,
|
| 218 |
+
"time_raw": "none (single sample per donor)",
|
| 219 |
+
"time_field": "timepoint",
|
| 220 |
+
"group": "ped_sepsis"
|
| 221 |
+
}
|
| 222 |
+
]
|
| 223 |
+
},
|
| 224 |
+
{
|
| 225 |
+
"donor_id": "Abd-S102",
|
| 226 |
+
"assigned_stratum": true,
|
| 227 |
+
"selected_sample_id": "Abd-S102",
|
| 228 |
+
"candidates": [
|
| 229 |
+
{
|
| 230 |
+
"sample_id": "Abd-S102",
|
| 231 |
+
"time_value": 0.0,
|
| 232 |
+
"time_raw": "none (single sample per donor)",
|
| 233 |
+
"time_field": "timepoint",
|
| 234 |
+
"group": "adult_sepsis"
|
| 235 |
+
}
|
| 236 |
+
]
|
| 237 |
+
},
|
| 238 |
+
{
|
| 239 |
+
"donor_id": "Skin-S46",
|
| 240 |
+
"assigned_stratum": true,
|
| 241 |
+
"selected_sample_id": "Skin-S46",
|
| 242 |
+
"candidates": [
|
| 243 |
+
{
|
| 244 |
+
"sample_id": "Skin-S46",
|
| 245 |
+
"time_value": 0.0,
|
| 246 |
+
"time_raw": "none (single sample per donor)",
|
| 247 |
+
"time_field": "timepoint",
|
| 248 |
+
"group": "adult_sepsis"
|
| 249 |
+
}
|
| 250 |
+
]
|
| 251 |
+
}
|
| 252 |
+
],
|
| 253 |
+
"sha256": "e72d06f5f4f5c10cf7fff8edaee1493e18c67dc4bbf65793eae6c984120cc4d2"
|
| 254 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/receipts/ye2026_sepsis-disease-draw0-score.json
ADDED
|
@@ -0,0 +1,143 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"state": "completed",
|
| 3 |
+
"signature": "48e152e6db5d13fb7fc294a0ac4083c73920c02b81d3b26ffa5f108cc286ff68",
|
| 4 |
+
"outputs": [
|
| 5 |
+
{
|
| 6 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/score/summary.json",
|
| 7 |
+
"bytes": 55493,
|
| 8 |
+
"mtime_ns": 1791817021802869858,
|
| 9 |
+
"sha256": "841049689ef4839a90ab6c90cf5b456aadf875104ef82c62aea0bba548dcf742"
|
| 10 |
+
},
|
| 11 |
+
{
|
| 12 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/statistics/status.json",
|
| 13 |
+
"bytes": 694,
|
| 14 |
+
"mtime_ns": 1791818665945980025,
|
| 15 |
+
"sha256": "24708d27b1aa41ad11e2af040580e50b5425df9163634e038bef0826f0a706f7"
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/statistics/donor_bootstrap_2000.csv",
|
| 19 |
+
"bytes": 13215,
|
| 20 |
+
"mtime_ns": 1791818483841613623,
|
| 21 |
+
"sha256": "aad670c960d24ddfb1360b46a05acf0ada75824c0d800b2612670ac30cecb538"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/extras/ye2026_sepsis/strict/manifest.json",
|
| 25 |
+
"bytes": 4375,
|
| 26 |
+
"mtime_ns": 1791818396432896827,
|
| 27 |
+
"sha256": "cea3245b2dccd35d1d585dd3d342713c23d8d438b1564f34b0603b945460df1b"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/contrast/ye2026_sepsis/strict/manifest.json",
|
| 31 |
+
"bytes": 18883,
|
| 32 |
+
"mtime_ns": 1791818483485251228,
|
| 33 |
+
"sha256": "c678141da4c7f923de7c401d074c0782edda3d5fba6f94bf20a5f750078864c4"
|
| 34 |
+
}
|
| 35 |
+
],
|
| 36 |
+
"seconds": 1760.0342039810002,
|
| 37 |
+
"at": "2026-10-12T15:24:26.184568+00:00",
|
| 38 |
+
"execution": {
|
| 39 |
+
"host": "spark-fa6b",
|
| 40 |
+
"map_host": null,
|
| 41 |
+
"map_path": null,
|
| 42 |
+
"map_sha256": null,
|
| 43 |
+
"argv": [
|
| 44 |
+
"/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
|
| 45 |
+
"-u",
|
| 46 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 47 |
+
"--support-manifest",
|
| 48 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw0/support.json",
|
| 49 |
+
"--out",
|
| 50 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0",
|
| 51 |
+
"--action",
|
| 52 |
+
"all",
|
| 53 |
+
"--threads",
|
| 54 |
+
"4",
|
| 55 |
+
"--arm",
|
| 56 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/lora.npz",
|
| 57 |
+
"--arm",
|
| 58 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/pairedcal.npz",
|
| 59 |
+
"--arm",
|
| 60 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/scsemi.npz",
|
| 61 |
+
"--arm",
|
| 62 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 63 |
+
"--arm",
|
| 64 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 65 |
+
],
|
| 66 |
+
"command": [
|
| 67 |
+
"systemd-run",
|
| 68 |
+
"--user",
|
| 69 |
+
"--wait",
|
| 70 |
+
"--collect",
|
| 71 |
+
"--pipe",
|
| 72 |
+
"--quiet",
|
| 73 |
+
"--unit=pbisc-strict-ye2026_sepsis-disease-draw0-score-44882-1791816906149401107",
|
| 74 |
+
"--slice=app.slice",
|
| 75 |
+
"--working-directory=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012",
|
| 76 |
+
"--expand-environment=no",
|
| 77 |
+
"-p",
|
| 78 |
+
"MemoryMax=32G",
|
| 79 |
+
"-p",
|
| 80 |
+
"MemorySwapMax=0",
|
| 81 |
+
"-p",
|
| 82 |
+
"OOMPolicy=kill",
|
| 83 |
+
"-p",
|
| 84 |
+
"OOMScoreAdjust=500",
|
| 85 |
+
"-p",
|
| 86 |
+
"CPUQuota=400%",
|
| 87 |
+
"/usr/bin/env",
|
| 88 |
+
"CUDA_VISIBLE_DEVICES=",
|
| 89 |
+
"PATH=/home/sj_server_1/.local/bin:/home/sj_server_1/miniforge3/bin:/usr/local/bin:/usr/bin:/bin",
|
| 90 |
+
"PYTHONDONTWRITEBYTECODE=1",
|
| 91 |
+
"PYTHONUNBUFFERED=1",
|
| 92 |
+
"OMP_NUM_THREADS=4",
|
| 93 |
+
"OPENBLAS_NUM_THREADS=4",
|
| 94 |
+
"MKL_NUM_THREADS=4",
|
| 95 |
+
"NUMBA_NUM_THREADS=4",
|
| 96 |
+
"/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
|
| 97 |
+
"-u",
|
| 98 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 99 |
+
"--support-manifest",
|
| 100 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw0/support.json",
|
| 101 |
+
"--out",
|
| 102 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0",
|
| 103 |
+
"--action",
|
| 104 |
+
"all",
|
| 105 |
+
"--threads",
|
| 106 |
+
"4",
|
| 107 |
+
"--arm",
|
| 108 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/lora.npz",
|
| 109 |
+
"--arm",
|
| 110 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/pairedcal.npz",
|
| 111 |
+
"--arm",
|
| 112 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/scsemi.npz",
|
| 113 |
+
"--arm",
|
| 114 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 115 |
+
"--arm",
|
| 116 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 117 |
+
]
|
| 118 |
+
},
|
| 119 |
+
"argv": [
|
| 120 |
+
"/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
|
| 121 |
+
"-u",
|
| 122 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 123 |
+
"--support-manifest",
|
| 124 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw0/support.json",
|
| 125 |
+
"--out",
|
| 126 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0",
|
| 127 |
+
"--action",
|
| 128 |
+
"all",
|
| 129 |
+
"--threads",
|
| 130 |
+
"4",
|
| 131 |
+
"--arm",
|
| 132 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/lora.npz",
|
| 133 |
+
"--arm",
|
| 134 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/pairedcal.npz",
|
| 135 |
+
"--arm",
|
| 136 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/scsemi.npz",
|
| 137 |
+
"--arm",
|
| 138 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 139 |
+
"--arm",
|
| 140 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 141 |
+
],
|
| 142 |
+
"previous_outputs": null
|
| 143 |
+
}
|