Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/pooled_reproduction_check.csv

@@ -0,0 +1,31 @@
+dataset,unit,set,precision,coverage,precision_depth_matched,coverage_depth_matched,precision_per_donor_max_abs_diff,coverage_per_donor_max_abs_diff,precision_depth_matched_per_donor_max_abs_diff,coverage_depth_matched_per_donor_max_abs_diff,rows_and_subsample_equal_scorer
+giroux2022,pooled,real_R2,0.0,0.0,0.0,0.0,,,,,
+giroux2022,pooled,zs__raw,0.0,0.0,0.0,0.0,1.1102230246251565e-16,8.326672684688674e-17,1.1102230246251565e-16,5.551115123125783e-17,True
+giroux2022,pooled,zs__cal,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+giroux2022,pooled,pseudo_full__cal,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+giroux2022,pooled,real_lora__raw,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+giroux2022,pooled,zs__pseudo,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+immicro,pooled,real_R2,0.0,0.0,0.0,0.0,,,,,
+immicro,pooled,zs__raw,0.0,0.0,0.0,0.0,5.551115123125783e-17,8.326672684688674e-17,5.551115123125783e-17,8.326672684688674e-17,True
+immicro,pooled,zs__cal,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+immicro,pooled,pseudo_full__cal,0.0,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+immicro,pooled,real_lora__raw,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+immicro,pooled,zs__pseudo,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+imperial_eskd,pooled,real_R2,0.0,0.0,0.0,0.0,,,,,
+imperial_eskd,pooled,zs__raw,0.0,0.0,0.0,0.0,5.551115123125783e-17,8.326672684688674e-17,5.551115123125783e-17,8.326672684688674e-17,True
+imperial_eskd,pooled,zs__cal,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+imperial_eskd,pooled,pseudo_full__cal,0.0,0.0,0.0,0.0,5.551115123125783e-17,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+imperial_eskd,pooled,real_lora__raw,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+imperial_eskd,pooled,zs__pseudo,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+ji2025_chili,pooled,real_R2,0.0,0.0,0.0,0.0,,,,,
+ji2025_chili,pooled,zs__raw,0.0,0.0,0.0,0.0,0.0,6.938893903907228e-17,5.551115123125783e-17,8.326672684688674e-17,True
+ji2025_chili,pooled,zs__cal,0.0,0.0,0.0,0.0,0.0,8.326672684688674e-17,0.0,8.326672684688674e-17,True
+ji2025_chili,pooled,pseudo_full__cal,0.0,0.0,0.0,0.0,5.551115123125783e-17,6.938893903907228e-17,5.551115123125783e-17,5.551115123125783e-17,True
+ji2025_chili,pooled,real_lora__raw,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+ji2025_chili,pooled,zs__pseudo,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,5.551115123125783e-17,True
+ye2026_sepsis,pooled,real_R2,0.0,0.0,0.0,0.0,,,,,
+ye2026_sepsis,pooled,zs__raw,0.0,0.0,0.0,0.0,5.551115123125783e-17,6.938893903907228e-17,5.551115123125783e-17,8.326672684688674e-17,True
+ye2026_sepsis,pooled,zs__cal,0.0,0.0,0.0,0.0,1.1102230246251565e-16,8.326672684688674e-17,1.1102230246251565e-16,1.1102230246251565e-16,True
+ye2026_sepsis,pooled,pseudo_full__cal,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+ye2026_sepsis,pooled,real_lora__raw,0.0,0.0,0.0,0.0,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,1.1102230246251565e-16,True
+ye2026_sepsis,pooled,zs__pseudo,0.0,0.0,0.0,0.0,1.1102230246251565e-16,5.551115123125783e-17,1.1102230246251565e-16,1.1102230246251565e-16,True

paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/pooled_wide.csv

@@ -0,0 +1,121 @@
+dataset,design,unit,label,set,real_side,mode,n_real,n_gen,precision_k3,coverage_k3,density_k3,expected_coverage_identical_k3,precision_k5,coverage_k5,density_k5,expected_coverage_identical_k5,precision_k10,coverage_k10,density_k10,expected_coverage_identical_k10,c2st_knn_auc,c2st_knn_auc_sd,c2st_rf_auc,c2st_rf_auc_sd,nn1_acc,nn1_acc_real,nn1_acc_gen,mmd2_bw0.5,mmd2_bw1,mmd2_bw2,mmd2_sum,mmd_bandwidth_m,seconds,en_all_l2,en_all_sq,en_pc_l2,en_pc_sq,en_ok_all_l2,en_ok_all_sq,en_ok_pc_l2,en_ok_pc_sq,dif_all_l2,dif_all_sq,dif_pc_l2,dif_pc_sq,lb_all_l2,lb_all_sq,lb_pc_l2,lb_pc_sq,ub_all_l2,ub_all_sq,ub_pc_l2,ub_pc_sq
+giroux2022,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,raw,3600,3600,0.9775,0.9872222222222222,4.581851851851852,0.8751041738984521,0.9922222222222222,0.9977777777777778,4.2588333333333335,0.9688150860696122,0.9980555555555556,1.0,3.7886666666666655,0.9990308797468164,0.5664014274691358,0.0102128110307961,0.8444864969135804,0.0047206253064036,0.5275,0.1786111111111111,0.8763888888888889,0.0033666579808668,0.0006360554681608,5.892700859511102e-05,0.0040616404576228,31.39639266783558,7.5,0.2770115906688534,0.2772840555464686,0.3992201960828819,0.3928270588051732,True,True,True,True,16.65173434359464,287.10278888167994,20.327882455577733,428.64583635250784,16.050187386245444,266.1698857289474,18.99617566082737,373.9295919112231,18.22174618599365,341.6625176852933,22.33194576418629,513.2179714024685
+giroux2022,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,dm,3600,3600,0.9777777777777776,0.9852777777777778,4.449722222222222,0.8751041738984521,0.9905555555555556,0.9983333333333332,4.161333333333333,0.9688150860696122,0.9980555555555556,1.0,3.703361111111112,0.9990308797468164,0.5710248842592593,0.0115561938027552,0.8404976851851853,0.0047646747466297,0.5265277777777778,0.1794444444444444,0.8736111111111111,0.0032636566208532,0.0006202576202083,5.945750618585599e-05,0.0039433717472474,31.39639266783558,8.0,0.2770115906688534,0.2772840555464686,0.3992201960828819,0.3928270588051732,True,True,True,True,16.65173434359464,287.10278888167994,20.327882455577733,428.64583635250784,16.050187386245444,266.1698857289474,18.99617566082737,373.9295919112231,18.22174618599365,341.6625176852933,22.33194576418629,513.2179714024685
+giroux2022,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,3600,3600,,,,,,,,,,,,,0.5010951003086419,0.0153591788111438,0.4895626929012345,0.0199620776975401,0.5009722222222223,0.5011111111111111,0.5008333333333334,-2.303326183256127e-05,-1.6281318621524932e-05,-5.269607983082736e-06,-4.458418843716894e-05,31.39639266783558,6.0,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,3600,3600,,,,,,,,,,,,,0.5015929783950617,0.0148147456414761,0.4946603009259259,0.0160172213567698,0.5030555555555556,0.5022222222222222,0.5038888888888889,-4.394706207372368e-05,-2.6610247686909005e-05,-8.054403487722794e-06,-7.861171324835547e-05,31.39639266783558,5.9,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,raw,3600,3600,0.6852777777777778,0.1675,0.6742592592592592,0.8751041738984521,0.79,0.2091666666666666,0.6464444444444444,0.9688150860696122,0.9086111111111111,0.2811111111111111,0.5793611111111111,0.9990308797468164,0.9840827546296296,0.0033360628204252,0.9974591049382716,0.0014084634799028,0.9540277777777778,0.9105555555555556,0.9975,0.1382221312419814,0.1198081705431106,0.0438490469853485,0.3018793487704406,31.39639266783558,5.0,3.717854649535199,4.481288090604447,5.538559407238498,6.921583195209355,True,True,True,True,25.13759264589868,643.1642595542522,29.60837159302986,891.5137222160611,15.602450755279062,251.8846590464973,18.91067106975398,370.8333175984083,18.167140015471546,339.1987510211059,20.842166199930748,446.05894010888136
+giroux2022,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,dm,3600,3600,0.8555555555555555,0.2377777777777777,1.4422222222222223,0.8751041738984521,0.9119444444444444,0.2827777777777778,1.3666666666666667,0.9688150860696122,0.9747222222222224,0.355,1.2431666666666668,0.9990308797468164,0.9650534336419752,0.0055329437198213,0.9970636574074074,0.0005564342190731,0.9227777777777778,0.8480555555555556,0.9975,0.105975608205144,0.0842468586986437,0.0298294177031674,0.2200518846069553,31.39639266783558,5.3,3.717854649535199,4.481288090604447,5.538559407238498,6.921583195209355,True,True,True,True,25.13759264589868,643.1642595542522,29.60837159302986,891.5137222160611,15.602450755279062,251.8846590464973,18.91067106975398,370.8333175984083,18.167140015471546,339.1987510211059,20.842166199930748,446.05894010888136
+giroux2022,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,raw,3600,3600,,,,,,,,,,,,,0.9956954089506171,0.0011006549574687,0.9977627314814814,0.001097871071129,0.9854166666666668,0.9797222222222224,0.9911111111111112,0.1514905603741173,0.1230959409432514,0.0440838092203561,0.3186703105377249,31.39639266783558,4.5,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,dm,3600,3600,,,,,,,,,,,,,0.9921097608024692,0.0006787090201996,0.9954301697530864,0.0005915211068177,0.9675,0.9527777777777776,0.9822222222222222,0.1089987233067029,0.0846212574433045,0.0297249994166908,0.2233449801666982,31.39639266783558,4.3,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,Zero-shot + calibration,zs__cal,R1,raw,3600,3600,0.9136111111111112,0.6880555555555555,1.9089814814814807,0.8751041738984521,0.9652777777777778,0.7966666666666666,1.8975,0.9688150860696122,0.9947222222222222,0.9061111111111112,1.8329444444444445,0.9990308797468164,0.9160387731481482,0.0056804203534225,0.9615706018518516,0.0059372114166882,0.7855555555555556,0.5963888888888889,0.9747222222222224,0.044074301194681,0.024226501683521,0.0074301887906729,0.0757309916688749,31.39639266783558,5.4,2.0697601703563797,2.258937339762459,1.9823257434259105,2.151722743940957,True,True,True,True,20.81290365763369,446.20638304342646,24.034136738369995,593.2573577915616,15.863554339283851,260.33455954520167,19.417006184734664,391.0516244755759,18.2548213997074,342.617418935082,21.746154443514715,485.02550372436735
+giroux2022,pooled,pooled,Zero-shot + calibration,zs__cal,R1,dm,3600,3600,0.8513888888888889,0.6858333333333333,1.505648148148148,0.8751041738984521,0.9161111111111112,0.7958333333333333,1.4801111111111112,0.9688150860696122,0.9805555555555556,0.9019444444444444,1.4813611111111111,0.9990308797468164,0.904424575617284,0.0048678937374253,0.9462260802469136,0.0067072582565773,0.7776388888888889,0.6072222222222222,0.9480555555555557,0.0387719802557101,0.0225076078136237,0.0071370125644436,0.0684166006337775,31.39639266783558,5.2,2.0697601703563797,2.258937339762459,1.9823257434259105,2.151722743940957,True,True,True,True,20.81290365763369,446.20638304342646,24.034136738369995,593.2573577915616,15.863554339283851,260.33455954520167,19.417006184734664,391.0516244755759,18.2548213997074,342.617418935082,21.746154443514715,485.02550372436735
+giroux2022,pooled,pooled,Zero-shot + calibration,zs__cal,R2,raw,3600,3600,,,,,,,,,,,,,0.9446957947530864,0.0081238353188286,0.9461900077160492,0.0034339674400777,0.8601388888888889,0.8472222222222222,0.8730555555555556,0.0424654601752546,0.0242792925361898,0.0076426437051033,0.0743873964165478,31.39639266783558,4.4,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,Zero-shot + calibration,zs__cal,R2,dm,3600,3600,,,,,,,,,,,,,0.926719714506173,0.0079342882757611,0.9348117283950618,0.006783210614359,0.8402777777777778,0.8230555555555555,0.8575,0.0406936229869442,0.0234136936806204,0.0073851515432414,0.0714924682108061,31.39639266783558,4.1,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,raw,3600,3600,0.8841666666666667,0.7027777777777777,1.6369444444444443,0.8751041738984521,0.9425,0.8008333333333333,1.621444444444445,0.9688150860696122,0.9908333333333332,0.9077777777777778,1.614638888888889,0.9990308797468164,0.8818655478395062,0.0099104715880742,0.9310362654320988,0.0059861178976477,0.7533333333333333,0.5722222222222222,0.9344444444444444,0.0392588430812292,0.0251698448311066,0.0080061703313301,0.0724348582436659,31.39639266783558,5.3,2.081818936525292,2.235394992783218,1.9546968591275615,2.0574471673770454,True,True,True,True,20.569736087780864,435.1035476072482,23.89242055436563,585.5108280733051,16.15790358693297,269.77268069789125,20.01642441183614,413.425513909916,18.27712367060248,343.73315186433547,21.99933860358425,497.065724405709
+giroux2022,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,dm,3600,3600,0.7655555555555555,0.6066666666666667,0.9716666666666668,0.8751041738984521,0.865,0.7308333333333333,0.9690555555555556,0.9688150860696122,0.9575,0.8463888888888889,0.970111111111111,0.9990308797468164,0.8870898919753086,0.0097868033673428,0.921467399691358,0.0042250076810245,0.7720833333333333,0.6644444444444444,0.8797222222222222,0.0314953958495447,0.0212223555432933,0.007031889719667,0.0597496411125051,31.39639266783558,4.9,2.081818936525292,2.235394992783218,1.9546968591275615,2.0574471673770454,True,True,True,True,20.569736087780864,435.1035476072482,23.89242055436563,585.5108280733051,16.15790358693297,269.77268069789125,20.01642441183614,413.425513909916,18.27712367060248,343.73315186433547,21.99933860358425,497.065724405709
+giroux2022,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,raw,3600,3600,,,,,,,,,,,,,0.8977988040123457,0.007033780394327,0.9068782793209876,0.0068020458287594,0.7956944444444445,0.8561111111111112,0.7352777777777778,0.0364211854580989,0.023962358619963,0.0078089785259367,0.0681925226039988,31.39639266783558,4.4,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,dm,3600,3600,,,,,,,,,,,,,0.8941992669753086,0.0074359800933147,0.9167046682098764,0.0085643990678068,0.7884722222222222,0.8477777777777777,0.7291666666666666,0.0332090828311127,0.021339984523361,0.0069847445160504,0.0615338118705242,31.39639266783558,4.5,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,raw,3600,3600,0.9497222222222222,0.7691666666666667,2.9594444444444448,0.8751041738984521,0.9819444444444444,0.8505555555555555,2.879888888888889,0.9688150860696122,0.9980555555555556,0.9280555555555556,2.725416666666667,0.9990308797468164,0.8403792438271604,0.0101553783668551,0.9292663966049384,0.0046646933654805,0.7180555555555556,0.4783333333333333,0.9577777777777776,0.0397920696712003,0.0197964116923368,0.0056365385825565,0.0652250199460937,31.39639266783558,5.9,1.640724517206653,1.699201948854105,1.689158186293488,1.737368392765138,True,True,True,True,19.804583250202192,401.2359455232592,23.35215388960359,557.1361506766567,15.8755996451849,260.7405918998084,19.64814899160534,399.1129644469349,18.27026344389891,343.4237324871865,21.84096013744949,490.06845027698233
+giroux2022,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,dm,3600,3600,0.8783333333333333,0.8236111111111111,1.763888888888889,0.8751041738984521,0.9444444444444444,0.9163888888888888,1.7388333333333332,0.9688150860696122,0.9841666666666666,0.9744444444444444,1.6819722222222222,0.9990308797468164,0.7818094135802468,0.018433124338289,0.8626520061728395,0.0090505843903541,0.6838888888888889,0.4891666666666667,0.8786111111111111,0.0126052822876184,0.0064026293215846,0.0019428684079756,0.0209507800171787,31.39639266783558,5.5,1.640724517206653,1.699201948854105,1.689158186293488,1.737368392765138,True,True,True,True,19.804583250202192,401.2359455232592,23.35215388960359,557.1361506766567,15.8755996451849,260.7405918998084,19.64814899160534,399.1129644469349,18.27026344389891,343.4237324871865,21.84096013744949,490.06845027698233
+giroux2022,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,raw,3600,3600,,,,,,,,,,,,,0.8808832947530864,0.0061139344632668,0.8878591820987655,0.0093144896088878,0.7845833333333333,0.7852777777777777,0.7838888888888889,0.0299331276392315,0.0176570976349608,0.0055262730479448,0.0531164983221371,31.39639266783558,4.9,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,dm,3600,3600,,,,,,,,,,,,,0.8002411265432098,0.0096966999483183,0.843737075617284,0.0180354411550565,0.7155555555555555,0.715,0.7161111111111111,0.0107033758537915,0.0063452191686206,0.0020293170229812,0.0190779120453934,31.39639266783558,4.2,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,raw,3600,3600,0.9475,0.6588888888888889,2.5616666666666665,0.8751041738984521,0.9791666666666666,0.7563888888888889,2.518388888888889,0.9688150860696122,0.9975,0.8647222222222222,2.387,0.9990308797468164,0.8915499614197531,0.0082452774630181,0.9554527391975308,0.00219615139144,0.7763888888888889,0.5791666666666667,0.9736111111111112,0.0493470512473941,0.0241400036863759,0.0069240008109632,0.0804110557447332,31.39639266783558,5.3,1.769546489426309,1.8717979458648448,1.5131170568324237,1.55726135098007,True,True,True,True,20.19503983993047,418.1669345767186,23.37010174038512,558.0858227172795,15.780972302617077,257.89499064369727,19.26495927667013,383.9915337595935,18.275434902887294,343.5195871911464,21.977996212694592,495.7866982951539
+giroux2022,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,dm,3600,3600,0.8713888888888889,0.745,1.7066666666666668,0.8751041738984521,0.9455555555555556,0.8438888888888889,1.7040555555555557,0.9688150860696122,0.9869444444444444,0.9305555555555556,1.689027777777778,0.9990308797468164,0.8489523533950617,0.0064553776108561,0.9041064814814816,0.0046791333109876,0.7347222222222223,0.5497222222222222,0.9197222222222222,0.0354969124712107,0.0208655375865196,0.0066099342880938,0.0629723843458243,31.39639266783558,5.2,1.769546489426309,1.8717979458648448,1.5131170568324237,1.55726135098007,True,True,True,True,20.19503983993047,418.1669345767186,23.37010174038512,558.0858227172795,15.780972302617077,257.89499064369727,19.26495927667013,383.9915337595935,18.275434902887294,343.5195871911464,21.977996212694592,495.7866982951539
+giroux2022,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,raw,3600,3600,,,,,,,,,,,,,0.9307278163580246,0.008482912519838,0.9370765817901232,0.0018477913251427,0.8375,0.8163888888888889,0.8586111111111111,0.0433295905809977,0.0235329979053573,0.0071977454224461,0.0740603339088011,31.39639266783558,4.8,,,,,,,,,,,,,,,,,,,,
+giroux2022,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,dm,3600,3600,,,,,,,,,,,,,0.8640661651234568,0.0074875137387187,0.8889683641975308,0.0070346125837708,0.7672222222222222,0.7311111111111112,0.8033333333333333,0.0371545627806362,0.0219327246771938,0.0069441130915006,0.0660314005493307,31.39639266783558,4.4,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,raw,16050,16050,0.832834890965732,0.9305295950155764,1.4272481827622014,0.8750233648498914,0.9054205607476636,0.9874766355140188,1.4115389408099688,0.9687646018937646,0.9634267912772586,0.9999376947040498,1.3859065420560748,0.9990251098518792,0.5037100862763366,0.0048329341751695,0.5809284168437806,0.0062060104373111,0.4986292834890966,0.4011214953271028,0.5961370716510903,0.0001778637517659,3.096665543855792e-05,2.172247022702578e-06,0.0002110026542272,21.69186400461525,45.3,0.3975235356822855,0.3833077605017737,0.5303528297115367,0.515333252203914,True,True,True,True,11.88104390628869,144.3846684462183,13.16770358926964,177.8870914002398,11.087498062731685,125.54778826527738,11.941195267314075,145.6455721037472,13.083721612602794,174.69075410630884,14.253822358646222,208.2099790357781
+immicro,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,dm,16050,16050,0.829221183800623,0.9284735202492213,1.4060851505711318,0.8750233648498914,0.9051090342679128,0.9873520249221184,1.389619937694704,0.9687646018937646,0.9634890965732088,0.9996884735202493,1.3669096573208723,0.9990251098518792,0.5069457594549742,0.0038438136018735,0.5767754874273348,0.0040514988750421,0.4984735202492212,0.4082242990654205,0.5887227414330218,0.0001653709009004,2.8555205985547616e-05,1.5207425512198114e-06,0.0001954468494372,21.69186400461525,41.7,0.3975235356822855,0.3833077605017737,0.5303528297115367,0.515333252203914,True,True,True,True,11.88104390628869,144.3846684462183,13.16770358926964,177.8870914002398,11.087498062731685,125.54778826527738,11.941195267314075,145.6455721037472,13.083721612602794,174.69075410630884,14.253822358646222,208.2099790357781
+immicro,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,16050,16050,,,,,,,,,,,,,0.5048518453819353,0.0042730171610518,0.5065794683669607,0.0039519115010786,0.4967601246105919,0.4938317757009345,0.4996884735202492,-2.2438192525453537e-05,-2.390451746969724e-05,-9.461750874351084e-06,-5.580446086950186e-05,21.69186400461525,37.3,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,16050,16050,,,,,,,,,,,,,0.5030166147455868,0.0068936246345613,0.4991418561543462,0.0036801734963751,0.4970404984423676,0.4939563862928349,0.5001246105919003,-2.7443742110777603e-05,-2.718181894456606e-05,-1.0631969257879348e-05,-6.525753031322301e-05,21.69186400461525,39.2,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,raw,16050,16050,0.4004984423676012,0.092398753894081,0.2435721703011422,0.8750233648498914,0.5179439252336449,0.1278504672897196,0.2367476635514018,0.9687646018937646,0.6804361370716511,0.1918380062305296,0.236423676012461,0.9990251098518792,0.9950887025552936,0.0008520683285463,0.9982080239904504,0.0002799058999691,0.9784735202492212,0.9613707165109034,0.9955763239875388,0.0997121473516926,0.0998368427009235,0.0404012412598082,0.2399502313124244,21.69186400461525,35.1,3.758376127519848,4.8323143173713445,12.454119943233543,24.92939466492558,True,True,True,True,17.251163937165916,310.19368203040887,19.41440373860005,400.370890177011,10.78004309812676,120.41218787416886,12.707665316992829,171.12877367428698,12.50182948125533,159.68560464550924,13.24618096098669,180.3244288269272
+immicro,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,dm,16050,16050,0.3953271028037383,0.1001246105919003,0.2422014537902388,0.8750233648498914,0.5026791277258567,0.1401869158878504,0.2337943925233644,0.9687646018937646,0.6597507788161994,0.2175077881619937,0.22603738317757,0.9990251098518792,0.9950414689298436,0.0009035786684279,0.9980273580419444,0.0001813504830658,0.9753271028037384,0.9562616822429908,0.994392523364486,0.0923995420028686,0.0943626641963554,0.0382828673000807,0.2250450734993048,21.69186400461525,33.2,3.758376127519848,4.8323143173713445,12.454119943233543,24.92939466492558,True,True,True,True,17.251163937165916,310.19368203040887,19.41440373860005,400.370890177011,10.78004309812676,120.41218787416886,12.707665316992829,171.12877367428698,12.50182948125533,159.68560464550924,13.24618096098669,180.3244288269272
+immicro,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,raw,16050,16050,,,,,,,,,,,,,0.9963603419997864,0.0004525551176062,0.998400888966528,0.0005701985774568,0.9820560747663551,0.9709034267912772,0.993208722741433,0.105362878114921,0.101883404665972,0.040801123596043,0.248047406376936,21.69186400461525,32.0,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,dm,16050,16050,,,,,,,,,,,,,0.9960271542395744,0.0005357139450233,0.9982026863093332,0.0004747356047361,0.9789719626168224,0.9650467289719626,0.9928971962616824,0.0962752398951063,0.0958886651331907,0.0386060977584907,0.2307700027867879,21.69186400461525,27.4,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,Zero-shot + calibration,zs__cal,R1,raw,16050,16050,0.7129595015576324,0.3434890965732087,1.123489096573209,0.8750233648498914,0.8069158878504673,0.4190031152647975,1.1218940809968847,0.9687646018937646,0.9050467289719626,0.527227414330218,1.1153707165109037,0.9990251098518792,0.9667195970536,0.0022409031713385,0.985746654244427,0.0007393473409974,0.8989719626168224,0.8084735202492211,0.9894704049844236,0.0618631377874711,0.0423018183235912,0.015263909707081,0.1194288658181434,21.69186400461525,32.8,1.9999083462854264,2.262585533573569,2.445226748137297,2.846689186111849,True,True,True,True,14.8970043214228,228.27054080211065,16.345581399161166,277.5405828961902,10.473279102655113,113.6467160201051,12.02579492864811,150.2770274314233,12.68524307939644,164.3072647954553,13.792414925670368,194.98284079722663
+immicro,pooled,pooled,Zero-shot + calibration,zs__cal,R1,dm,16050,16050,0.8071651090342679,0.5500934579439253,2.0323156801661475,0.8750233648498914,0.8801246105919003,0.651588785046729,2.032735202492212,0.9687646018937646,0.944423676012461,0.7689719626168224,2.006791277258567,0.9990251098518792,0.9340319872672044,0.0035869003112788,0.9760725245290708,0.0009507339534467,0.8287850467289719,0.6741433021806854,0.9834267912772584,0.0437088757411794,0.0264494381000497,0.0090448076044598,0.079203121445689,21.69186400461525,37.6,1.9999083462854264,2.262585533573569,2.445226748137297,2.846689186111849,True,True,True,True,14.8970043214228,228.27054080211065,16.345581399161166,277.5405828961902,10.473279102655113,113.6467160201051,12.02579492864811,150.2770274314233,12.68524307939644,164.3072647954553,13.792414925670368,194.98284079722663
+immicro,pooled,pooled,Zero-shot + calibration,zs__cal,R2,raw,16050,16050,,,,,,,,,,,,,0.9728081346260228,0.0027778425696276,0.9860599664211334,0.0016438600086618,0.9138940809968848,0.8441121495327103,0.9836760124610592,0.0612427308412774,0.042528360080333,0.0154898765620483,0.1192609674836588,21.69186400461525,30.6,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,Zero-shot + calibration,zs__cal,R2,dm,16050,16050,,,,,,,,,,,,,0.9425814093419126,0.0031392570551086,0.9761939033976766,0.0017796218698058,0.8456386292834891,0.7107165109034268,0.9805607476635514,0.0426844760232612,0.0264653004254109,0.0091393059085902,0.0782890823572624,21.69186400461525,34.0,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,raw,16050,16050,0.5305295950155763,0.370404984423676,0.500332294911734,0.8750233648498914,0.6563862928348909,0.4801246105919003,0.5140934579439252,0.9687646018937646,0.8047352024922119,0.6233021806853583,0.5324610591900312,0.9990251098518792,0.949796537300686,0.0024783728098524,0.9530549004765092,0.0031081342798669,0.8608722741433021,0.819190031152648,0.9025545171339564,0.0444081247481399,0.033794959871416,0.0122708961694499,0.0904739807890059,21.69186400461525,30.1,1.659240689720981,1.7668770545860122,1.872058231681229,1.9873871371644172,True,True,True,True,14.049847687145297,201.86671549081217,15.519174908312449,246.86669310115133,10.884973908174503,121.54899129715348,12.408808612551807,158.06538745570543,12.79239686288941,167.0064406342142,14.070277386932467,202.74782701911465
+immicro,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,dm,16050,16050,0.7391277258566978,0.6957009345794393,1.3047975077881622,0.8750233648498914,0.8260436137071651,0.8094704049844237,1.3062554517133955,0.9687646018937646,0.913644859813084,0.9193769470404984,1.3134579439252336,0.9990251098518792,0.8700505041682435,0.0057571493201641,0.9168891994448812,0.0017711552010864,0.7516510903426791,0.601993769470405,0.9013084112149532,0.021776509287874,0.0151793688740919,0.0052828063871399,0.0422386845491059,21.69186400461525,34.3,1.659240689720981,1.7668770545860122,1.872058231681229,1.9873871371644172,True,True,True,True,14.049847687145297,201.86671549081217,15.519174908312449,246.86669310115133,10.884973908174503,121.54899129715348,12.408808612551807,158.06538745570543,12.79239686288941,167.0064406342142,14.070277386932467,202.74782701911465
+immicro,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,raw,16050,16050,,,,,,,,,,,,,0.9524248211876826,0.0012675497282687,0.9539344435710057,0.0017264519508198,0.8607476635514019,0.8553894080996884,0.8661059190031153,0.0451734874338658,0.0341943655011822,0.0124590068090668,0.0918268597441149,21.69186400461525,28.1,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,dm,16050,16050,,,,,,,,,,,,,0.8764005687056609,0.003605475977079,0.9173621374016168,0.0059772809888976,0.759968847352025,0.6446728971962616,0.8752647975077882,0.0217276621789158,0.0152884062764699,0.0053391944662084,0.0423552629215943,21.69186400461525,29.2,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,raw,16050,16050,0.7345794392523365,0.5335202492211838,1.079086188992731,0.8750233648498914,0.8340809968847352,0.6479750778816199,1.0976947040498444,0.9687646018937646,0.9241121495327104,0.7842990654205607,1.1239127725856697,0.9990251098518792,0.9360485534884172,0.0041662643978773,0.9537199755437156,0.0028211102453493,0.8286915887850468,0.7083489096573209,0.9490342679127726,0.0404747954968762,0.0264045742158069,0.0089914790823319,0.0758708487950152,21.69186400461525,32.6,1.4882581596327678,1.5604177880048078,1.6864832779686187,1.776719367444502,True,True,True,True,13.748670220663,193.02316187285064,15.163832455162686,235.82224310276555,10.760346098663476,118.93602632327293,12.178417583075731,152.47439385591858,12.768280073463186,166.41506438544954,13.94861887180888,199.38548784974844
+immicro,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,dm,16050,16050,0.8479127725856698,0.8113395638629284,2.3780269989615785,0.8750233648498914,0.9092834890965732,0.8995638629283489,2.3650467289719623,0.9687646018937646,0.9606230529595016,0.9623052959501558,2.3486479750778817,0.9990251098518792,0.8611856154346327,0.0053772313549035,0.9313829058336004,0.0026440081304586,0.7196884735202492,0.4876635514018692,0.9517133956386292,0.0214617922660351,0.0115017857996004,0.0036082993220154,0.0365718773876511,21.69186400461525,35.0,1.4882581596327678,1.5604177880048078,1.6864832779686187,1.776719367444502,True,True,True,True,13.748670220663,193.02316187285064,15.163832455162686,235.82224310276555,10.760346098663476,118.93602632327293,12.178417583075731,152.47439385591858,12.768280073463186,166.41506438544954,13.94861887180888,199.38548784974844
+immicro,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,raw,16050,16050,,,,,,,,,,,,,0.940942149241564,0.0010604377307306,0.9508616181908172,0.0024814619791126,0.841619937694704,0.7580685358255451,0.9251713395638628,0.0395966332967687,0.0263951135675684,0.0091181438905485,0.0751098907548856,21.69186400461525,26.2,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,dm,16050,16050,,,,,,,,,,,,,0.8684694442018227,0.0030413701185088,0.927208441300065,0.0042456443929753,0.7321495327102804,0.5232398753894081,0.9410591900311528,0.0202938072550528,0.0113554879170152,0.0036357110408078,0.0352850062128759,21.69186400461525,29.6,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,raw,16050,16050,0.7941433021806854,0.3553271028037383,1.6739771547248183,0.8750233648498914,0.8700934579439252,0.4273520249221184,1.6586791277258566,0.9687646018937646,0.9361993769470404,0.5244236760124611,1.6376635514018691,0.9990251098518792,0.9592865267223726,0.0023469254797102,0.9890999213905144,0.0008390339699465,0.8942990654205607,0.7949532710280374,0.993644859813084,0.0725321636875596,0.0434524509835156,0.0150722704416386,0.1310568851127139,21.69186400461525,34.4,1.7518272491440194,1.9503949461369317,1.857813846316089,2.085986696407278,True,True,True,True,14.544466951559311,217.51096023293,15.860414024417215,261.0146005889043,10.285923321459936,110.00069719950709,11.567523131315946,138.88609408881032,12.71683860273564,165.12300114433845,13.878244897984745,197.4332107652673
+immicro,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,dm,16050,16050,0.8671028037383177,0.5264174454828661,3.0029906542056075,0.8750233648498914,0.918816199376947,0.6269158878504673,2.930915887850467,0.9687646018937646,0.9652959501557632,0.7405607476635514,2.8750155763239875,0.9990251098518792,0.92723657573199,0.0039630499138866,0.9826741879446048,0.0009918992031333,0.8344548286604362,0.6778816199376947,0.9910280373831776,0.0559429268458158,0.0296051745041978,0.0096963047049678,0.0952444060549815,21.69186400461525,38.4,1.7518272491440194,1.9503949461369317,1.857813846316089,2.085986696407278,True,True,True,True,14.544466951559311,217.51096023293,15.860414024417215,261.0146005889043,10.285923321459936,110.00069719950709,11.567523131315946,138.88609408881032,12.71683860273564,165.12300114433845,13.878244897984745,197.4332107652673
+immicro,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,raw,16050,16050,,,,,,,,,,,,,0.9671174289845788,0.0029094266787556,0.9888199260488544,0.0011939979259198,0.9077570093457944,0.826417445482866,0.9890965732087228,0.0707314387746154,0.0433442679158149,0.0152285311072615,0.1293042377976918,21.69186400461525,32.1,,,,,,,,,,,,,,,,,,,,
+immicro,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,dm,16050,16050,,,,,,,,,,,,,0.9375691132655934,0.0023744400594604,0.9823910288137732,0.0016404183806353,0.8481308411214953,0.7085981308411214,0.9876635514018692,0.0538919103349517,0.0293384538785268,0.0097391197735576,0.0929694839870363,21.69186400461525,68.2,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,raw,23482,23482,0.8372370326207308,0.9158078528234392,1.2921528546688243,0.8750159698489162,0.9104846265224428,0.98488203730517,1.2835533600204412,0.968759980624218,0.9672515117962694,0.9997018993271442,1.2663444340345795,0.9990245807479472,0.504761581853981,0.0051538859388345,0.5567519759696162,0.0057044254467137,0.5033004003066178,0.4326292479345882,0.5739715526786475,3.306619570203617e-05,-5.0570609579914105e-06,-3.0383529483479776e-06,2.4970781795696784e-05,25.605611978636716,74.4,0.2989737553444033,0.2788377735880961,0.2525498237288333,0.2346325226930585,True,True,True,True,13.386344970960089,185.8478013686603,14.585271655965334,221.77973525918287,12.21075382622833,153.63584723597427,13.4666485741716,187.08987617414508,16.142841923317434,269.1580511260042,17.895964996878025,334.9374920411848
+imperial_eskd,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,dm,23482,23482,0.8357465292564518,0.9158504386338472,1.2916276296737927,0.8750159698489162,0.9101013542287708,0.9837322204241546,1.2828719870539138,0.968759980624218,0.9666978962609658,0.9996593135167362,1.267034324163189,0.9990245807479472,0.5028420942633882,0.005344092527437,0.5496102435938701,0.0039528801850058,0.5057277914998722,0.4352269823694745,0.57622860063027,2.6251926702580697e-05,-7.28861560261862e-06,-3.5331866246046677e-06,1.543012447535741e-05,25.605611978636716,73.5,0.2989737553444033,0.2788377735880961,0.2525498237288333,0.2346325226930585,True,True,True,True,13.386344970960089,185.8478013686603,14.585271655965334,221.77973525918287,12.21075382622833,153.63584723597427,13.4666485741716,187.08987617414508,16.142841923317434,269.1580511260042,17.895964996878025,334.9374920411848
+imperial_eskd,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,22750,22750,,,,,,,,,,,,,0.4958963748339572,0.0055020771959431,0.5036814104576742,0.0061784491903256,0.498967032967033,0.499956043956044,0.497978021978022,-1.739683675033854e-05,-1.3605249939097064e-05,-4.846557232651705e-06,-3.584864392208731e-05,25.605611978636716,61.5,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,22750,22750,,,,,,,,,,,,,0.495440850138872,0.0041140291496539,0.4986221229320129,0.0073660890415083,0.4986153846153846,0.4992087912087912,0.498021978021978,-1.7934354957283016e-05,-1.4005321850030228e-05,-5.020169982383749e-06,-3.695984678969699e-05,25.605611978636716,63.1,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,raw,23482,23482,0.2065837662890725,0.0495698833148794,0.1019362348465491,0.8750159698489162,0.3106209011157482,0.0722681202623286,0.1085512307299207,0.968759980624218,0.4888851034835192,0.1119580955625585,0.1189975300229963,0.9990245807479472,0.9952415295795396,0.0006862789462009,0.9976040760781804,0.0003154200105333,0.9791755387105016,0.9778553785878544,0.9804956988331488,0.1635952351423256,0.2486390984999509,0.1135517655454154,0.525786099187692,25.605611978636716,62.2,3.2025375010426287,4.0516478836646845,4.979409273729808,6.3848346385556525,True,True,True,True,21.63402986790216,488.7978932352486,24.535764550748087,636.3375289385311,12.649822971592684,167.08697696723846,14.86178973014892,233.11073852627285,15.455163078737268,246.48946343825557,16.804585409073482,296.2645730793748
+imperial_eskd,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,dm,23482,23482,0.2390767396303551,0.0676688527382676,0.1207165772364648,0.8750159698489162,0.3647048803338727,0.0948811855889617,0.129546035261051,0.968759980624218,0.5657524912699089,0.1470488033387275,0.1384677625415211,0.9990245807479472,0.99439681256094,0.0006088765229967,0.9964336348510244,0.000415843569349,0.9718933651307384,0.969508559747892,0.9742781705135848,0.147289840629827,0.2293924217762636,0.104795120951397,0.4814773833574878,25.605611978636716,60.9,3.2025375010426287,4.0516478836646845,4.979409273729808,6.3848346385556525,True,True,True,True,21.63402986790216,488.7978932352486,24.535764550748087,636.3375289385311,12.649822971592684,167.08697696723846,14.86178973014892,233.11073852627285,15.455163078737268,246.48946343825557,16.804585409073482,296.2645730793748
+imperial_eskd,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,raw,23482,23482,,,,,,,,,,,,,0.9951331667126798,0.0005613068658109,0.9976875843005146,0.0005069344105373,0.9813474150413084,0.9837748062345626,0.978920023848054,0.1679433369005644,0.2496493532971384,0.1133379439423043,0.5309306341400073,25.605611978636716,53.7,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,dm,23482,23482,,,,,,,,,,,,,0.9945219364915392,0.0006179886725154,0.9967203048447792,0.0005599840081914,0.9742781705135848,0.9768759049484712,0.9716804360786986,0.1505968606284427,0.2298503647230996,0.1044524817644043,0.4848997071159467,25.605611978636716,54.1,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,Zero-shot + calibration,zs__cal,R1,raw,23482,23482,0.5889617579422537,0.376501149816881,0.6109360361127673,0.8750159698489162,0.7094796013968145,0.4895664764500468,0.6302188910654969,0.968759980624218,0.8417085427135679,0.6392981858444766,0.6611617409079295,0.9990245807479472,0.9586003591044768,0.0011234339657399,0.96619192106755,0.0021587275247544,0.8740311728132186,0.8159441274167447,0.9321182182096924,0.0346572178780594,0.0199443806839616,0.0063700088704821,0.0609716074325031,25.605611978636716,60.4,1.1749644517164737,1.1941591622466805,1.137026444727406,1.1319766612088853,True,True,True,True,16.393618912333707,276.234845383545,18.06677426278444,338.324223061497,12.11372987761962,151.75966200460354,13.790873830764754,196.6560383582012,15.756298832332858,255.996339421,17.551472761289016,321.8071916973543
+imperial_eskd,pooled,pooled,Zero-shot + calibration,zs__cal,R1,dm,23482,23482,0.6452176134911848,0.4179797291542458,0.7652528177611221,0.8750159698489162,0.7583255259347585,0.5382420577463589,0.7875649433608721,0.968759980624218,0.8640235073673452,0.6882292820032365,0.8093177753172643,0.9990245807479472,0.9480713282022052,0.0025979163562187,0.9652055748119912,0.0018465702621887,0.8587215739715527,0.7882207648411549,0.9292223831019504,0.0361218488054788,0.0215693947948967,0.0069973081374312,0.0646885517378068,25.605611978636716,61.3,1.1749644517164737,1.1941591622466805,1.137026444727406,1.1319766612088853,True,True,True,True,16.393618912333707,276.234845383545,18.06677426278444,338.324223061497,12.11372987761962,151.75966200460354,13.790873830764754,196.6560383582012,15.756298832332858,255.996339421,17.551472761289016,321.8071916973543
+imperial_eskd,pooled,pooled,Zero-shot + calibration,zs__cal,R2,raw,23482,23482,,,,,,,,,,,,,0.9613413751202172,0.0022365575990916,0.9666671425845316,0.0008848546056435,0.8808874882889022,0.8456264372711013,0.916148539306703,0.0339732955730447,0.0197337738394756,0.0063398036027899,0.0600468730153103,25.605611978636716,51.1,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,Zero-shot + calibration,zs__cal,R2,dm,23482,23482,,,,,,,,,,,,,0.9500785568174313,0.0020824645528005,0.9655892792341282,0.0006767259343643,0.864385486755813,0.8100672855804446,0.9187036879311812,0.0358220042812834,0.0215389270239745,0.0070194468671189,0.0643803781723769,25.605611978636716,52.4,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,raw,23482,23482,0.4144451068903841,0.3230133719444681,0.317122334838032,0.8750159698489162,0.5342815773784175,0.4184907588791414,0.3267779575845328,0.968759980624218,0.6912954603526105,0.5551912102887318,0.3366621241802231,0.9990245807479472,0.9030113750646098,0.002211357955831,0.915568369344566,0.0030478584633389,0.7878587854526872,0.8461374669959969,0.7295801039093774,0.0331202083979909,0.0254698630642264,0.0088169023881703,0.0674069738503877,25.605611978636716,60.2,1.372012703258088,1.4079607026643317,1.4105973839893968,1.3929832935772206,True,True,True,True,16.951721838615782,294.91160831247555,18.82730172823209,365.5326015331393,12.82069559664752,170.5077627583988,14.910568821479242,230.26692995822407,15.831619790103169,258.8652327635368,17.68721717713952,327.3719506706758
+imperial_eskd,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,dm,23482,23482,0.4802401839707009,0.4510263180308321,0.4047355421173664,0.8750159698489162,0.6053572949493229,0.5933480964142748,0.4184481730687335,0.968759980624218,0.7564091644663998,0.7710160974363343,0.4337024103568691,0.9990245807479472,0.8337191646227451,0.0018901958620874,0.8778881477639059,0.002591201492371,0.7219572438463504,0.7917128012946086,0.6522016863980922,0.0162785352637861,0.0113142127804295,0.0038640672592251,0.0314568153034408,25.605611978636716,60.2,1.372012703258088,1.4079607026643317,1.4105973839893968,1.3929832935772206,True,True,True,True,16.951721838615782,294.91160831247555,18.82730172823209,365.5326015331393,12.82069559664752,170.5077627583988,14.910568821479242,230.26692995822407,15.831619790103169,258.8652327635368,17.68721717713952,327.3719506706758
+imperial_eskd,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,raw,23482,23482,,,,,,,,,,,,,0.9024390771479032,0.0023925279746067,0.9186013306336108,0.0018169824596659,0.7830465888765863,0.8790988842517673,0.6869942935014053,0.0333616745104546,0.0251745315383249,0.0086791684999567,0.0672153745487363,25.605611978636716,52.7,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,dm,23482,23482,,,,,,,,,,,,,0.8373542479402578,0.0050087101126534,0.8815901171990067,0.0021563856118915,0.7242994634187888,0.8147091389149136,0.6338897879226641,0.0165127383159613,0.0112595208151793,0.003834720235565,0.0316069793667058,25.605611978636716,57.3,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,raw,23482,23482,0.6057405672429946,0.5602163359168725,0.6525849586917639,0.8750159698489162,0.7190188229282003,0.6965761008431991,0.6667745507197002,0.968759980624218,0.847457627118644,0.8500127757431224,0.6865343667489993,0.9990245807479472,0.863951906676889,0.0035709698454058,0.8714485303776842,0.0037798338367106,0.751469210459075,0.7202112256196236,0.7827271952985265,0.0163445017267112,0.0113248840163011,0.0036798456741164,0.0313492314171288,25.605611978636716,56.8,1.1222383516963443,1.133490718140724,1.1057156763172835,1.0799751003752884,True,True,True,True,16.170857043828125,269.2712761216667,17.881848338875606,330.6588785495497,12.460513876387797,160.82678163770424,14.505168598126982,217.96063008706457,15.766712743884952,256.49981428665706,17.559009484235293,322.3132660166548
+imperial_eskd,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,dm,23482,23482,0.6714504727024956,0.6746869942935014,0.8686795559719501,0.8750159698489162,0.7785537858785453,0.8099395281492207,0.8787156119580957,0.968759980624218,0.8881270760582574,0.9371433438378332,0.8932629247934589,0.9990245807479472,0.8179118728906059,0.0020697130029136,0.85311917695745,0.0028685057446137,0.7115450132016012,0.6504130823609573,0.7726769440422451,0.0098092745768187,0.0067198531842347,0.0022769774507074,0.0188061052117609,25.605611978636716,57.5,1.1222383516963443,1.133490718140724,1.1057156763172835,1.0799751003752884,True,True,True,True,16.170857043828125,269.2712761216667,17.881848338875606,330.6588785495497,12.460513876387797,160.82678163770424,14.505168598126982,217.96063008706457,15.766712743884952,256.49981428665706,17.559009484235293,322.3132660166548
+imperial_eskd,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,raw,23482,23482,,,,,,,,,,,,,0.8661225843251804,0.0056637917222255,0.8696418142649506,0.0033047060028413,0.7509794736393833,0.76837577719104,0.7335831700877268,0.0159328470357607,0.0112339424417775,0.0036857166949249,0.0308525061724632,25.605611978636716,52.5,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,dm,23482,23482,,,,,,,,,,,,,0.8174841994474585,0.0044467781042545,0.8525017513059792,0.0013591845348014,0.7094796013968145,0.6815433097691849,0.7374158930244442,0.009805610511563,0.006843958426383,0.0023399577946581,0.0189895267326042,25.605611978636716,54.0,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,raw,23482,23482,0.585341964057576,0.4164466399795588,0.6141299718933652,0.8750159698489162,0.7107571757090537,0.5407546205604292,0.6349714675070267,0.968759980624218,0.8426880163529512,0.7036879311813303,0.6670470999063112,0.9990245807479472,0.9574938397854742,0.0022897052678369,0.9650070464773618,0.0023086664298254,0.8668128779490674,0.7989949748743719,0.9346307810237628,0.0274860366377797,0.0175003821318204,0.0058556230464967,0.050842041816097,25.605611978636716,63.0,1.0930376854899284,1.10201266914349,1.031792151126044,1.02205077648622,True,True,True,True,16.101705522514255,266.71166089649427,17.681915695150995,324.76862067760646,12.02914752253848,149.7520374297762,13.678771218631002,193.6290853020708,15.755055653647744,255.8847768633635,17.558568590757908,321.9392812263765
+imperial_eskd,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,dm,23482,23482,0.6613576356358062,0.4561792010901968,0.8096556227465008,0.8750159698489162,0.7719955710757176,0.5760582573886381,0.8286261817562389,0.968759980624218,0.8849331402776595,0.73162422280896,0.8600587684183629,0.9990245807479472,0.9465950538966584,0.0021800775826986,0.9665057304321072,0.0022921004983577,0.8529937824716805,0.7674814751724726,0.9385060897708885,0.0301029641231793,0.0191395544876242,0.006369927926372,0.0556124465371756,25.605611978636716,59.7,1.0930376854899284,1.10201266914349,1.031792151126044,1.02205077648622,True,True,True,True,16.101705522514255,266.71166089649427,17.681915695150995,324.76862067760646,12.02914752253848,149.7520374297762,13.678771218631002,193.6290853020708,15.755055653647744,255.8847768633635,17.558568590757908,321.9392812263765
+imperial_eskd,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,raw,23482,23482,,,,,,,,,,,,,0.9606835955740576,0.0013368120922627,0.965413574665496,0.0006055443219898,0.8735201430883229,0.8287198705391363,0.9183204156375095,0.0268673134649877,0.0173657395916375,0.0058533760616346,0.0500864291182598,25.605611978636716,49.7,,,,,,,,,,,,,,,,,,,,
+imperial_eskd,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,dm,23482,23482,,,,,,,,,,,,,0.9486121208045324,0.0009208498098521,0.9669034697144658,0.0006954462908504,0.8577421003321694,0.7897964398262499,0.9256877608380888,0.0298224348129418,0.0191898719192853,0.0064237091010572,0.0554360158332844,25.605611978636716,53.0,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,raw,4950,4950,0.9628282828282828,0.9753535353535352,2.494882154882155,0.8750757614011244,0.9826262626262626,0.9971717171717172,2.3614949494949498,0.9687973389146656,0.996161616161616,1.0,2.2093535353535354,0.9990288535340172,0.5412495663707786,0.0100013199240984,0.7653429241914091,0.0120870383272184,0.5230303030303031,0.2698989898989899,0.7761616161616162,0.0009045940730637,0.0001029680065525,-1.5417797664563082e-05,0.0009921442819516,29.13266369743263,9.4,0.0732234947934492,0.0742856062136393,0.2220255397510476,0.2085523804161382,True,True,True,True,13.405374436129096,185.3179769094526,15.544258238677653,251.5759126726693,13.19890615592815,178.98919264543423,14.685536638300915,222.92851258396595,16.018606045742988,264.1844893738112,18.553207003339107,360.2916058823559
+ji2025_chili,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,dm,4950,4950,0.958181818181818,0.9767676767676768,2.441077441077441,0.8750757614011244,0.98,0.9975757575757576,2.323838383838384,0.9687973389146656,0.9967676767676767,1.0,2.1805656565656566,0.9990288535340172,0.5398136924803592,0.0087370855966617,0.7564127129884706,0.0197222262664759,0.5195959595959596,0.2727272727272727,0.7664646464646465,0.0008107265886508,8.722183019593821e-05,-1.561294900787047e-05,0.0008823354698389,29.13266369743263,9.3,0.0732234947934492,0.0742856062136393,0.2220255397510476,0.2085523804161382,True,True,True,True,13.405374436129096,185.3179769094526,15.544258238677653,251.5759126726693,13.19890615592815,178.98919264543423,14.685536638300915,222.92851258396595,16.018606045742988,264.1844893738112,18.553207003339107,360.2916058823559
+ji2025_chili,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,4950,4950,,,,,,,,,,,,,0.4936675849403121,0.0137788939107534,0.5063411896745229,0.0100097515320015,0.4993939393939394,0.5,0.4987878787878788,-1.918010889889743e-05,-1.616465551568247e-05,-5.6101346266324015e-06,-4.09548990412123e-05,29.13266369743263,7.7,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,4950,4950,,,,,,,,,,,,,0.4939789817365574,0.0153106503402108,0.5009140903989389,0.0116294607284367,0.4931313131313131,0.4959595959595959,0.4903030303030303,-5.871090938364132e-05,-2.964988364517751e-05,-8.993069134932696e-06,-9.735386216375153e-05,29.13266369743263,7.7,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,raw,4950,4950,0.3393939393939394,0.0254545454545454,0.1973737373737374,0.8750757614011244,0.487070707070707,0.0351515151515151,0.2149090909090908,0.9687973389146656,0.7169696969696969,0.0553535353535353,0.4726666666666667,0.9990288535340172,0.9977203346597284,0.0005823493856138,0.9994725028058362,0.0004111635436674,0.9925252525252524,0.9866666666666668,0.9983838383838384,0.2937137588187763,0.2725244267338593,0.10051632547892,0.6667545110315558,29.13266369743263,6.0,7.249649209103709,10.12502899172134,-435.11989314197285,-82.75643650783815,True,True,False,False,24.99083497131078,640.8281165798543,28.48819976784448,837.1380927302424,12.7866581019599,169.9645360870376,16.58814260465143,296.89534196183007,14.470074294570372,216.46944791275337,16.56079368921283,290.36723643233154
+ji2025_chili,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,dm,4950,4950,0.2238383838383838,0.0686868686868686,0.1257239057239057,0.8750757614011244,0.3212121212121212,0.1042424242424242,0.1291313131313131,0.9687973389146656,0.4892929292929293,0.1674747474747474,0.1436161616161616,0.9990288535340172,0.9959132741556984,0.0013958474184862,0.9972915008672584,0.000663211210648,0.9790909090909092,0.9684848484848484,0.9896969696969696,0.1889436514987943,0.1434669764804241,0.0496222852030632,0.3820329131822817,29.13266369743263,6.7,7.249649209103709,10.12502899172134,-435.11989314197285,-82.75643650783815,True,True,False,False,24.99083497131078,640.8281165798543,28.48819976784448,837.1380927302424,12.7866581019599,169.9645360870376,16.58814260465143,296.89534196183007,14.470074294570372,216.46944791275337,16.56079368921283,290.36723643233154
+ji2025_chili,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,raw,4950,4950,,,,,,,,,,,,,0.9991517192123252,0.0009250986603651,0.9995184164881136,0.0003019882391777,0.9962626262626264,0.9945454545454544,0.997979797979798,0.3069763600908979,0.274556486477201,0.1002306936368009,0.6817635402048998,29.13266369743263,6.4,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,dm,4950,4950,,,,,,,,,,,,,0.9958781756963576,0.0018873439980313,0.9974235282114072,0.0003882955040768,0.9813131313131314,0.976161616161616,0.9864646464646464,0.1920230968399706,0.1431248360374837,0.0492146076535027,0.384362540530957,29.13266369743263,6.2,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,Zero-shot + calibration,zs__cal,R1,raw,4950,4950,0.3707070707070707,0.0503030303030303,0.2175084175084175,0.8750757614011244,0.5272727272727272,0.0713131313131313,0.243030303030303,0.9687973389146656,0.74,0.1064646464646464,0.3591313131313131,0.9990288535340172,0.9958636873788388,0.0013419603085518,0.999107948168554,0.0005272729805816,0.9875757575757576,0.9767676767676768,0.9983838383838384,0.195050844742214,0.131311353919735,0.0433413718646429,0.369703570526592,29.13266369743263,6.8,5.483636549051704,7.0760591336385605,7.934627640851987,9.766082700594092,True,True,True,True,22.8263034302311,533.344053558585,25.336766329562863,661.6710272436923,12.880541380455671,171.93229410846368,16.022250847012707,271.57179241158923,14.694257873299344,223.00758229140467,17.19615791665183,311.51608192783226
+ji2025_chili,pooled,pooled,Zero-shot + calibration,zs__cal,R1,dm,4950,4950,0.3438383838383838,0.1618181818181818,0.2112457912457912,0.8750757614011244,0.4806060606060606,0.227070707070707,0.2237171717171717,0.9687973389146656,0.6703030303030303,0.3472727272727273,0.2488686868686868,0.9990288535340172,0.9910951943679216,0.0022878388661751,0.9926386083052752,0.0024230585814141,0.9607070707070708,0.9383838383838384,0.983030303030303,0.0811663825343574,0.0415179073108638,0.0126576834616702,0.1353419733068915,29.13266369743263,7.0,5.483636549051704,7.0760591336385605,7.934627640851987,9.766082700594092,True,True,True,True,22.8263034302311,533.344053558585,25.336766329562863,661.6710272436923,12.880541380455671,171.93229410846368,16.022250847012707,271.57179241158923,14.694257873299344,223.00758229140467,17.19615791665183,311.51608192783226
+ji2025_chili,pooled,pooled,Zero-shot + calibration,zs__cal,R2,raw,4950,4950,,,,,,,,,,,,,0.9984280175492296,0.0007657878610667,0.9991684521987552,0.0001081889203971,0.992121212121212,0.9870707070707072,0.9971717171717172,0.200281521211138,0.1317449256732534,0.0432860735613398,0.3753125204457313,29.13266369743263,6.4,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,Zero-shot + calibration,zs__cal,R2,dm,4950,4950,,,,,,,,,,,,,0.9917751249872464,0.002167956640803,0.9934485256606468,0.0010521139684108,0.9616161616161616,0.9496969696969696,0.9735353535353536,0.0811189483975685,0.0411137326115242,0.012508750437143,0.1347414314462358,29.13266369743263,5.8,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,raw,4950,4950,0.3282828282828283,0.0589898989898989,0.1945454545454545,0.8750757614011244,0.4642424242424242,0.0785858585858585,0.2061818181818182,0.9687973389146656,0.6937373737373738,0.1133333333333333,0.2852525252525252,0.9990288535340172,0.9949771451892664,0.0013645485493168,0.9978282828282828,0.0006288834818239,0.9812121212121212,0.9686868686868688,0.9937373737373736,0.2284472553764527,0.1524890206084308,0.0502870073273822,0.4312232833122658,29.13266369743263,7.7,5.678438095197977,7.214996786119841,5.156488880108137,5.990456681246193,True,True,True,True,22.22274907854871,508.9675466692034,24.437505164681934,618.7190048091277,13.242569445022234,181.7155708653989,15.930602418737132,266.2879552550933,14.824021859044436,227.07276027307395,17.58034955166732,325.1200390688967
+ji2025_chili,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,dm,4950,4950,0.3583838383838383,0.2224242424242424,0.239057239057239,0.8750757614011244,0.4703030303030303,0.3133333333333333,0.2471111111111111,0.9687973389146656,0.6397979797979798,0.4545454545454545,0.2622020202020202,0.9990288535340172,0.9746779920416284,0.0041501499911114,0.9781508009386798,0.001791330768074,0.9135353535353536,0.906060606060606,0.9210101010101012,0.0853778451073057,0.0443192736617004,0.0136157688270099,0.1433128875960161,29.13266369743263,7.3,5.678438095197977,7.214996786119841,5.156488880108137,5.990456681246193,True,True,True,True,22.22274907854871,508.9675466692034,24.437505164681934,618.7190048091277,13.242569445022234,181.7155708653989,15.930602418737132,266.2879552550933,14.824021859044436,227.07276027307395,17.58034955166732,325.1200390688967
+ji2025_chili,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,raw,4950,4950,,,,,,,,,,,,,0.996611774308744,0.0018078347734706,0.9980277522701766,0.0004888800460033,0.983030303030303,0.9818181818181818,0.9842424242424244,0.2349306472779132,0.1536473698423666,0.0504414244932245,0.4390194416135043,29.13266369743263,6.8,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,dm,4950,4950,,,,,,,,,,,,,0.9734119987756352,0.0046848293553695,0.978183246607489,0.0029182636590206,0.9093939393939394,0.917979797979798,0.9008080808080808,0.0862710622421202,0.0446043507757172,0.0137085871224209,0.1445840001402584,29.13266369743263,6.2,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,raw,4950,4950,0.8438383838383838,0.6286868686868687,1.47010101010101,0.8750757614011244,0.9187878787878788,0.7335353535353535,1.4425050505050503,0.9687973389146656,0.9709090909090908,0.8569696969696969,1.439858585858586,0.9990288535340172,0.9018028772574228,0.0075101749580946,0.9366559534741352,0.0042225596546651,0.7903030303030303,0.6315151515151515,0.9490909090909092,0.0393996351091385,0.0219999930422931,0.0065018467263273,0.0679014748777591,29.13266369743263,7.9,1.8458758468365797,1.9476842141188115,1.439518352446177,1.4391671932625978,True,True,True,True,16.809427830192494,290.1440407717617,19.276812741479237,384.9329276459827,13.142664433579544,177.998940605031,15.493361203555086,248.75880839295,15.129127067508565,235.57762782433895,18.121637203992957,343.3788913760296
+ji2025_chili,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,dm,4950,4950,0.8402020202020202,0.7739393939393939,1.4734006734006737,0.8750757614011244,0.915959595959596,0.8795959595959596,1.4744242424242424,0.9687973389146656,0.9727272727272728,0.9648484848484848,1.4995353535353535,0.9990288535340172,0.8361527395163758,0.0111860998909999,0.889778185899398,0.0123533156626601,0.7196969696969697,0.5511111111111111,0.8882828282828282,0.0135989406257405,0.0068611340352922,0.002115792382636,0.0225758670436687,29.13266369743263,7.9,1.8458758468365797,1.9476842141188115,1.439518352446177,1.4391671932625978,True,True,True,True,16.809427830192494,290.1440407717617,19.276812741479237,384.9329276459827,13.142664433579544,177.998940605031,15.493361203555086,248.75880839295,15.129127067508565,235.57762782433895,18.121637203992957,343.3788913760296
+ji2025_chili,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,raw,4950,4950,,,,,,,,,,,,,0.907903989388838,0.0040057292567024,0.9085254565860628,0.0042925739086828,0.8029292929292929,0.7709090909090909,0.834949494949495,0.0360141632586958,0.0211982333950464,0.0065174113911496,0.063729808044892,29.13266369743263,6.3,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,dm,4950,4950,,,,,,,,,,,,,0.8330698908274666,0.0067630494343475,0.8737492092643606,0.0065312547053223,0.7273737373737373,0.6597979797979798,0.794949494949495,0.0118189335427052,0.0066555096865481,0.0021754217722518,0.0206498650015052,29.13266369743263,6.5,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,raw,4950,4950,0.895959595959596,0.4684848484848485,1.974074074074074,0.8750757614011244,0.9456565656565656,0.5618181818181818,1.9396363636363636,0.9687973389146656,0.9846464646464648,0.685050505050505,1.968080808080808,0.9990288535340172,0.9398425670849914,0.0088709770386132,0.9830424446485052,0.0022225174021574,0.8554545454545455,0.7228282828282828,0.988080808080808,0.0540146483870301,0.0263967142087124,0.0078817323859381,0.0882930949816808,29.13266369743263,7.7,1.569157081482467,1.6872224344806703,1.048181295293418,1.0446940950527432,True,True,True,True,16.677265161483422,287.4111654771311,18.54777286278011,358.6153807044218,12.476904054224308,161.78141911223597,14.041697805615396,207.04721478118668,15.153730457920494,236.24092356018636,18.34064406367024,352.13099255020234
+ji2025_chili,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,dm,4950,4950,0.8814141414141414,0.5014141414141414,1.8685521885521883,0.8750757614011244,0.9357575757575758,0.6044444444444445,1.847515151515152,0.9687973389146656,0.9775757575757577,0.7375757575757576,1.8544646464646464,0.9990288535340172,0.9366515661667176,0.0098645998052813,0.978603305785124,0.0018598476798371,0.8441414141414142,0.7074747474747475,0.9808080808080808,0.045605671977717,0.0229407665566481,0.0070992561082656,0.0756456946426308,29.13266369743263,6.9,1.569157081482467,1.6872224344806703,1.048181295293418,1.0446940950527432,True,True,True,True,16.677265161483422,287.4111654771311,18.54777286278011,358.6153807044218,12.476904054224308,161.78141911223597,14.041697805615396,207.04721478118668,15.153730457920494,236.24092356018636,18.34064406367024,352.13099255020234
+ji2025_chili,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,raw,4950,4950,,,,,,,,,,,,,0.9595225997347208,0.0057817137651947,0.9804423018059382,0.0026189400654097,0.8914141414141414,0.8232323232323232,0.9595959595959596,0.0500305661000497,0.0255162094365364,0.0078783115827234,0.0834250871193096,29.13266369743263,6.8,,,,,,,,,,,,,,,,,,,,
+ji2025_chili,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,dm,4950,4950,,,,,,,,,,,,,0.9510903989388838,0.0055910585555458,0.9772592592592592,0.0027104877025706,0.8766666666666667,0.7981818181818182,0.9551515151515152,0.0435185882273331,0.0226834368586512,0.0071871103647007,0.0733891354506851,29.13266369743263,6.6,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,raw,12300,12300,0.8677235772357723,0.921869918699187,1.3163685636856368,0.8750304884244985,0.9363414634146342,0.9869105691056912,1.307512195121951,0.9687690533285568,0.9804878048780488,0.9996747967479674,1.2890731707317074,0.9990256193628076,0.516801622711349,0.0030740796576066,0.5870507799590191,0.0046275343842897,0.5077642276422765,0.4292682926829268,0.5862601626016261,9.044037879168965e-05,1.3528004798146752e-05,-3.319073153207341e-06,0.0001006493104366,27.935913545117483,30.8,0.1151145377463097,0.1100182444547025,0.2389915051580081,0.2238724331585775,True,True,True,True,11.296591897515114,133.78594196060715,13.224387133861818,186.86076457124045,10.929237014731768,124.46378235420084,12.167803960131682,154.9219747001688,14.120448915290542,209.1966341881027,16.58881119648337,297.5871051070384
+ye2026_sepsis,pooled,pooled,Real vs real control (held-out real cells),real_R2,R1,dm,12300,12300,0.8682113821138211,0.9211382113821138,1.314769647696477,0.8750304884244985,0.9326829268292685,0.9854471544715449,1.3033333333333332,0.9687690533285568,0.9795934959349594,0.9998373983739838,1.2835853658536585,0.9990256193628076,0.5142142078128098,0.0026692207943442,0.5813873190561175,0.0031473781664726,0.5026422764227643,0.4234959349593496,0.5817886178861789,8.717573012606561e-05,1.3038222914429907e-05,-3.570200725944161e-06,9.664375231455136e-05,27.935913545117483,28.1,0.1151145377463097,0.1100182444547025,0.2389915051580081,0.2238724331585775,True,True,True,True,11.296591897515114,133.78594196060715,13.224387133861818,186.86076457124045,10.929237014731768,124.46378235420084,12.167803960131682,154.9219747001688,14.120448915290542,209.1966341881027,16.58881119648337,297.5871051070384
+ye2026_sepsis,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,12300,12300,,,,,,,,,,,,,0.5056783991010642,0.0069110614677469,0.4972704904488069,0.0094660278292206,0.5030081300813009,0.4961788617886178,0.5098373983739838,-6.113976974936319e-05,-3.927775354117813e-05,-1.351023669760032e-05,-0.0001139277599881,27.935913545117483,28.1,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,12300,12300,,,,,,,,,,,,,0.5031293542203714,0.0039519133492453,0.5015891665014212,0.0088595205561475,0.5016260162601626,0.4948780487804878,0.5083739837398374,-6.272248920557999e-05,-3.9454149749929e-05,-1.3297239933596217e-05,-0.0001154738788891,27.935913545117483,24.8,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,raw,12300,12300,0.3086178861788617,0.0316260162601626,0.1673983739837398,0.8750304884244985,0.4286991869918699,0.0435772357723577,0.186780487804878,0.9687690533285568,0.6141463414634146,0.0673170731707317,0.2187967479674796,0.9990256193628076,0.9974525580011898,0.0004948992689147,0.9991371207614514,0.0002403160968954,0.9902032520325204,0.9852032520325203,0.9952032520325204,0.1527144691714902,0.1896922296731541,0.0799049185980178,0.4223116174426622,27.935913545117483,21.2,4.227445685095213,5.288462866746687,15.46363840177722,19.58226526468158,True,True,True,True,20.87898008776773,446.72888967641296,24.67146868725999,636.4320906241509,11.331121538228292,135.56795807392754,14.676871703261908,235.65873385422609,13.589662335855214,194.4056467261508,15.323200641143009,256.1248725441537
+ye2026_sepsis,pooled,pooled,"Zero-shot, real bulk",zs__raw,R1,dm,12300,12300,0.2784552845528455,0.0289430894308943,0.1493495934959349,0.8750304884244985,0.4129268292682926,0.0417886178861788,0.170780487804878,0.9687690533285568,0.5923577235772358,0.0645528455284552,0.1862520325203252,0.9990256193628076,0.9973086952210986,0.0010559223583366,0.999032817767202,0.0002626280165731,0.9900813008130082,0.9860975609756096,0.9940650406504064,0.1587414177447796,0.1915769773610641,0.0794917532038763,0.4298101483097202,27.935913545117483,23.6,4.227445685095213,5.288462866746687,15.46363840177722,19.58226526468158,True,True,True,True,20.87898008776773,446.72888967641296,24.67146868725999,636.4320906241509,11.331121538228292,135.56795807392754,14.676871703261908,235.65873385422609,13.589662335855214,194.4056467261508,15.323200641143009,256.1248725441537
+ye2026_sepsis,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,raw,12300,12300,,,,,,,,,,,,,0.9977635501355012,0.0005517276983947,0.9990830358913346,0.00028681251158,0.9905691056910568,0.988130081300813,0.9930081300813008,0.1582561475238338,0.1919667140316807,0.0803767381418025,0.4305995996973171,27.935913545117483,18.4,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,"Zero-shot, real bulk",zs__raw,R2,dm,12300,12300,,,,,,,,,,,,,0.9977282041113094,0.0007497033868873,0.9990197137946988,0.0002789549227805,0.9902032520325204,0.9883739837398374,0.9920325203252032,0.1637570771744741,0.1936905607242359,0.0799235243928533,0.4373711622915635,27.935913545117483,19.7,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,Zero-shot + calibration,zs__cal,R1,raw,12300,12300,0.6113821138211382,0.2263414634146341,0.476260162601626,0.8750304884244985,0.7540650406504065,0.3051219512195122,0.5112845528455285,0.9687690533285568,0.9034146341463416,0.4308130081300813,0.548479674796748,0.9990256193628076,0.9809489721726484,0.0014026138221978,0.986930117654835,0.0015097504903187,0.9329674796747968,0.8965853658536586,0.969349593495935,0.0629713329432363,0.0343103150224688,0.0103726580689211,0.1076543060346263,27.935913545117483,20.5,1.8718731377851467,1.9944661986472425,1.522222248271414,1.4924512643993009,True,True,True,True,16.22678256631211,272.6831458426862,18.07852785719196,341.64905359797285,10.897305349781554,124.08162760669804,12.70654883159964,169.38613341664487,13.744441252824933,198.58853995085207,16.235586087291153,284.8089443924273
+ye2026_sepsis,pooled,pooled,Zero-shot + calibration,zs__cal,R1,dm,12300,12300,0.6643089430894309,0.412520325203252,0.7589159891598917,0.8750304884244985,0.79,0.5321138211382114,0.791479674796748,0.9687690533285568,0.9110569105691056,0.6827642276422764,0.8407235772357724,0.9990256193628076,0.9557185537709036,0.0021226112200827,0.9726488531958492,0.0014641228096705,0.8734959349593496,0.797479674796748,0.9495121951219512,0.0428830716676545,0.024999928706477,0.0082527387244253,0.0761357390985569,27.935913545117483,24.0,1.8718731377851467,1.9944661986472425,1.522222248271414,1.4924512643993009,True,True,True,True,16.22678256631211,272.6831458426862,18.07852785719196,341.64905359797285,10.897305349781554,124.08162760669804,12.70654883159964,169.38613341664487,13.744441252824933,198.58853995085207,16.235586087291153,284.8089443924273
+ye2026_sepsis,pooled,pooled,Zero-shot + calibration,zs__cal,R2,raw,12300,12300,,,,,,,,,,,,,0.9836200178465198,0.0021597542854799,0.9876576277348136,0.0009005178040432,0.9382520325203252,0.9179674796747967,0.9585365853658536,0.0619857019399776,0.0340047109757459,0.0103853558461128,0.1063757687618364,27.935913545117483,22.0,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,Zero-shot + calibration,zs__cal,R2,dm,12300,12300,,,,,,,,,,,,,0.9591313702161413,0.003207036204728,0.9741224800052878,0.0016873862075811,0.8804065040650406,0.8217073170731707,0.9391056910569106,0.0430091535973333,0.0250990527558623,0.0082757431091624,0.0763839494623581,27.935913545117483,19.8,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,raw,12300,12300,0.581869918699187,0.4144715447154471,0.5114092140921409,0.8750304884244985,0.7149593495934959,0.5482113821138211,0.5431056910569105,0.9687690533285568,0.8628455284552845,0.7255284552845529,0.586650406504065,0.9990256193628076,0.9070176317007071,0.004339947687092,0.9097615506642872,0.0045317777072537,0.8097560975609757,0.8108943089430894,0.8086178861788618,0.0202462320143853,0.01235083907991,0.0039622010783115,0.0365592721726069,27.935913545117483,21.7,1.3711299345329728,1.40214474847827,1.1864988514803048,1.1508221482595098,True,True,True,True,14.76447576063945,227.73687682583423,17.004641042458907,306.7449776301711,11.12208466813647,129.48364633179102,13.197255138033288,183.81382482592176,13.77857330627829,199.55717518869128,16.406180203300256,290.634112383099
+ye2026_sepsis,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R1,dm,12300,12300,0.624390243902439,0.609349593495935,0.8147967479674797,0.8750304884244985,0.7377235772357723,0.7504878048780488,0.8314471544715447,0.9687690533285568,0.8634146341463415,0.8922764227642277,0.8667479674796749,0.9990256193628076,0.8224077434067025,0.0057758098355295,0.8700942725890674,0.0053482531985974,0.7284146341463414,0.6914634146341463,0.7653658536585366,0.0092949714864186,0.0057809006266216,0.0019655123015098,0.0170413844145501,27.935913545117483,23.6,1.3711299345329728,1.40214474847827,1.1864988514803048,1.1508221482595098,True,True,True,True,14.76447576063945,227.73687682583423,17.004641042458907,306.7449776301711,11.12208466813647,129.48364633179102,13.197255138033288,183.81382482592176,13.77857330627829,199.55717518869128,16.406180203300256,290.634112383099
+ye2026_sepsis,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,raw,12300,12300,,,,,,,,,,,,,0.9010066263467512,0.0043009327963149,0.9104780884394208,0.0042128352699362,0.795,0.841869918699187,0.748130081300813,0.0198236179796549,0.012266100225601,0.0040141068556298,0.0361038250608858,27.935913545117483,17.9,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,sc-only fine-tune (+ calibration),pseudo_full__cal,R2,dm,12300,12300,,,,,,,,,,,,,0.8226767796946263,0.005070697930398,0.8740619009848635,0.0031710290183623,0.7258130081300813,0.7223577235772358,0.7292682926829268,0.0094755896964588,0.0058607848118621,0.001972415414672,0.017308789922993,27.935913545117483,21.0,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,raw,12300,12300,0.6844715447154471,0.5378861788617886,0.7790785907859079,0.8750304884244985,0.8121951219512196,0.6719512195121952,0.8191056910569106,0.9687690533285568,0.9256910569105692,0.829349593495935,0.8678455284552845,0.9990256193628076,0.8896844801374844,0.0064536102596758,0.9084994546896688,0.0058591883016328,0.7901219512195122,0.7317073170731707,0.8485365853658536,0.0172262252222057,0.0093892447506263,0.0028077303976323,0.0294232003704644,27.935913545117483,25.0,1.1983896152373237,1.1958133574946663,1.070236779422674,1.010650423048177,True,True,True,True,14.30778860533915,213.2223120721638,16.50741580023527,287.3773952238315,11.013208405104294,126.712234434109,12.993503879110175,177.3224892579667,13.7623812603634,199.05636497576893,16.276807152448093,286.2176160555524
+ye2026_sepsis,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R1,dm,12300,12300,0.7431707317073171,0.7232520325203252,1.210840108401084,0.8750304884244985,0.8427642276422764,0.8463414634146341,1.245089430894309,0.9687690533285568,0.9334959349593496,0.9490243902439024,1.275569105691057,0.9990256193628076,0.8062482318725627,0.0057412735463146,0.8613154702888494,0.008487401974971,0.7109756097560975,0.6041463414634146,0.8178048780487804,0.0088336521904914,0.0049675381596863,0.0016221823297952,0.015423372679973,27.935913545117483,22.5,1.1983896152373237,1.1958133574946663,1.070236779422674,1.010650423048177,True,True,True,True,14.30778860533915,213.2223120721638,16.50741580023527,287.3773952238315,11.013208405104294,126.712234434109,12.993503879110175,177.3224892579667,13.7623812603634,199.05636497576893,16.276807152448093,286.2176160555524
+ye2026_sepsis,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,raw,12300,12300,,,,,,,,,,,,,0.8860724436512658,0.0029981636650653,0.9010247042104568,0.0070935970381054,0.7848373983739837,0.7717886178861788,0.7978861788617886,0.0156563717333387,0.0089412380472522,0.0027803303755022,0.0273779401560932,27.935913545117483,20.4,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,"LoRA, all training pairs",real_lora__raw,R2,dm,12300,12300,,,,,,,,,,,,,0.805462357062595,0.0074120544006164,0.8576275034701567,0.0043069264833846,0.7095528455284553,0.6339024390243903,0.7852032520325203,0.0081268755532876,0.0047652705073033,0.0015752243414379,0.0144673704020289,27.935913545117483,20.3,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,raw,12300,12300,0.630569105691057,0.2490243902439024,0.5166124661246613,0.8750304884244985,0.7729268292682927,0.3346341463414634,0.5555934959349593,0.9687690533285568,0.9152032520325204,0.48,0.6000975609756097,0.9990256193628076,0.9780299424945468,0.0022535114353403,0.9826320807720272,0.0013818598858848,0.924959349593496,0.8856910569105692,0.9642276422764228,0.0530905740408723,0.0290320074567675,0.0088189883150906,0.0909415698127305,27.935913545117483,24.3,1.6495157416409811,1.7008143481240188,1.3074810628771123,1.2461001724160228,True,True,True,True,15.600056503171038,250.99480933328684,17.351959404278336,313.8786189574193,10.898758482996636,124.05997722016308,12.646765128977288,167.68291382504202,13.748866488330023,198.69177477827492,16.245436198787864,285.0055082428915
+ye2026_sepsis,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R1,dm,12300,12300,0.7261788617886179,0.4653658536585366,0.9507588075880756,0.8750304884244985,0.8360975609756097,0.5891056910569106,0.9774471544715448,0.9687690533285568,0.931869918699187,0.7456910569105691,1.020821138211382,0.9990256193628076,0.9433624661246612,0.0041093203377419,0.9634228138013088,0.0028095688727788,0.853170731707317,0.7668292682926829,0.9395121951219512,0.0332494975298364,0.019205575112414,0.0064367201685018,0.0588917928107523,27.935913545117483,25.6,1.6495157416409811,1.7008143481240188,1.3074810628771123,1.2461001724160228,True,True,True,True,15.600056503171038,250.99480933328684,17.351959404278336,313.8786189574193,10.898758482996636,124.05997722016308,12.646765128977288,167.68291382504202,13.748866488330023,198.69177477827492,16.245436198787864,285.0055082428915
+ye2026_sepsis,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,raw,12300,12300,,,,,,,,,,,,,0.9803673573930862,0.0020819438450975,0.9839677771167956,0.0018043576528761,0.930081300813008,0.9078861788617886,0.9522764227642276,0.0515806269093819,0.0285182775020893,0.00876953346996,0.0888684378814313,27.935913545117483,18.6,,,,,,,,,,,,,,,,,,,,
+ye2026_sepsis,pooled,pooled,"Zero-shot, sc pseudobulk input (reference)",zs__pseudo,R2,dm,12300,12300,,,,,,,,,,,,,0.9463422731178532,0.0038598507293481,0.965727923193866,0.0028160041841389,0.863780487804878,0.7961788617886179,0.9313821138211382,0.033023621430911,0.0192115413220559,0.00643780195182,0.0586729647047871,27.935913545117483,22.2,,,,,,,,,,,,,,,,,,,,

paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/run_time.csv

@@ -0,0 +1,31 @@
+dataset,design,unit,n_samples,seconds,threads
+giroux2022,fewshot,draw0,11,260.1,6
+giroux2022,fewshot,draw1,10,225.6,6
+giroux2022,fewshot,draw2,12,257.4,6
+giroux2022,fewshot,draw3,11,259.5,6
+giroux2022,fewshot,draw4,10,222.1,6
+immicro,fewshot,draw0,102,1478.6,6
+immicro,fewshot,draw1,102,1459.1,6
+immicro,fewshot,draw2,102,1421.0,6
+immicro,fewshot,draw3,102,1443.7,6
+immicro,fewshot,draw4,102,1427.8,6
+imperial_eskd,fewshot,draw0,142,2349.5,6
+imperial_eskd,fewshot,draw1,143,2296.8,6
+imperial_eskd,fewshot,draw2,142,2265.1,6
+imperial_eskd,fewshot,draw3,145,2309.4,6
+imperial_eskd,fewshot,draw4,143,2024.8,6
+ji2025_chili,fewshot,draw0,25,341.0,6
+ji2025_chili,fewshot,draw1,26,336.5,6
+ji2025_chili,fewshot,draw2,26,333.2,6
+ji2025_chili,fewshot,draw3,25,323.6,6
+ji2025_chili,fewshot,draw4,24,317.3,6
+ye2026_sepsis,fewshot,draw0,77,1331.2,6
+ye2026_sepsis,fewshot,draw1,77,1345.5,6
+ye2026_sepsis,fewshot,draw2,77,1364.5,6
+ye2026_sepsis,fewshot,draw3,77,1302.5,6
+ye2026_sepsis,fewshot,draw4,77,1308.9,6
+giroux2022,pooled,pooled,24,460.9,8
+immicro,pooled,pooled,107,1591.2,8
+imperial_eskd,pooled,pooled,157,2448.6,8
+ji2025_chili,pooled,pooled,33,387.0,8
+ye2026_sepsis,pooled,pooled,82,1372.7,8