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  1. paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_immicro_external.csv +7 -0
  2. paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_immicro_numbers.csv +27 -0
  3. paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_benchmark.csv +40 -0
  4. paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_broadcast.csv +32 -0
paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_immicro_external.csv ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ endpoint,pbisc_refcal,scsemiprofiler,reference_replay,diff_pbisc_minus_scsemi,ci95_low,ci95_high,diff_pbisc_minus_replay,ci95_low_replay,ci95_high_replay,n_donors,source
2
+ Composition L1,0.1359999333034457,0.155659577460352,0.17161479508016753,-0.0196596441569063,-0.0391365402569021,-0.0009135944985079,-0.03561486177672176,-0.05391239314525162,-0.017749110551712115,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
3
+ Monocyte IFN rmse,0.0786160021538172,0.2035541100262181,0.16301273538976382,-0.1249381078724009,-0.1420984752550057,-0.1099640369607547,-0.08439673323594654,-0.10393234325592678,-0.06398001833134594,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
4
+ T cell IFN rmse,0.0303781854685458,0.0889404418244625,0.025145608175735266,-0.0585622563559166,-0.0611235465891617,-0.0563894332712833,0.005232577292810615,0.0013162985540097494,0.0092359092253645,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
5
+ Monocyte IFN spearman,0.566204275162131,0.6292834890965732,-0.028174533200101885,-0.0630792139344421,-0.20676677169296,0.0736363677534822,0.5943788083622329,0.34420802050382304,0.8169824787900438,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
6
+ T cell IFN spearman,0.3898195497560688,0.5138913379964342,0.0384607848899861,-0.1240717882403653,-0.2969864025014433,0.036867395114856,0.35135876486608275,0.11158142816545316,0.5749270249989915,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
7
+ generation wall span (min),10.926326600000001,67.59664038333334,,-56.670313783333334,,,,,,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/runtime_statistics.csv
paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_immicro_numbers.csv ADDED
@@ -0,0 +1,27 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ key,value,source
2
+ composition L1 PBISC / scSemi / replay,0.136 / 0.156 / 0.172,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
3
+ "composition L1 PBISC - scSemi, 95% CI","-0.020 [-0.039, -0.001]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
4
+ "composition L1 PBISC - replay, 95% CI","-0.0356 [-0.0539, -0.0177]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
5
+ ifn_mono_rmse PBISC / scSemi / replay,0.079 / 0.204 / 0.163,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
6
+ "ifn_mono_rmse PBISC - scSemi, 95% CI","-0.125 [-0.142, -0.110]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
7
+ ifn_mono_rmse PBISC - scSemi assessment,pbisc_refcal favored at this endpoint,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
8
+ "ifn_mono_rmse PBISC - replay, 95% CI","-0.0844 [-0.1039, -0.0640]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
9
+ ifn_t_rmse PBISC / scSemi / replay,0.030 / 0.089 / 0.025,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
10
+ "ifn_t_rmse PBISC - scSemi, 95% CI","-0.059 [-0.061, -0.056]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
11
+ ifn_t_rmse PBISC - scSemi assessment,pbisc_refcal favored at this endpoint,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
12
+ "ifn_t_rmse PBISC - replay, 95% CI","+0.0052 [+0.0013, +0.0092]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
13
+ ifn_mono_spearman PBISC / scSemi / replay,0.566 / 0.629 / -0.028,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
14
+ "ifn_mono_spearman PBISC - scSemi, 95% CI","-0.063 [-0.207, +0.074]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
15
+ ifn_mono_spearman PBISC - scSemi assessment,Uncertain (interval includes zero),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
16
+ "ifn_mono_spearman PBISC - replay, 95% CI","+0.5944 [+0.3442, +0.8170]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
17
+ ifn_t_spearman PBISC / scSemi / replay,0.390 / 0.514 / 0.038,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
18
+ "ifn_t_spearman PBISC - scSemi, 95% CI","-0.124 [-0.297, +0.037]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
19
+ ifn_t_spearman PBISC - scSemi assessment,Uncertain (interval includes zero),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
20
+ "ifn_t_spearman PBISC - replay, 95% CI","+0.3514 [+0.1116, +0.5749]",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_reference/summary.json
21
+ generation wall span min PBISC / scSemi,10.9 / 67.6,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/runtime_statistics.csv
22
+ paired donors,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/endpoint_statistics.csv
23
+ evaluation genes,5500,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_genesets/summary.json
24
+ caveat: refcal fit on mean of all 107 target bulks (transductive),yes,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/REPORT.md
25
+ caveat: PBISC pretraining corpus includes part of AIFI,yes,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/report_genesets/REPORT.md
26
+ ifn_mono variance ratio pred/obs PBISC / scSemi (speaker note),0.830 / 0.036,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_genesets/summary.json
27
+ ifn_t variance ratio pred/obs PBISC / scSemi (speaker note),1.538 / 0.027,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/immicro_scsemi_comparison_20260927/scoring_genesets/summary.json
paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_benchmark.csv ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ axis_genes,metric,method,value,seed_sd,source
2
+ 1006,logfc_r,PBISC 6k 5-seed mean,0.3712812758215992,0.0176572343883349,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
3
+ 1006,logfc_r,PBISC-VAE,0.3741551919281764,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
4
+ 1006,logfc_r,scSemiProfiler,0.3179103699610459,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
5
+ 1006,logfc_r,broadcast (input bulk),0.6769568951083694,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
6
+ 1006,logfc_r,diffusion_f016k_e16,0.3991172272882592,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
7
+ 1006,logfc_r,diffusion_f016ks1_e16,0.3785261205502202,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
8
+ 1006,logfc_r,diffusion_f016ks2_e16,0.3592398986673997,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
9
+ 1006,logfc_r,diffusion_f016ks3_e16,0.3619273868311772,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
10
+ 1006,logfc_r,diffusion_f016ks4_e16,0.35759574577094,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
11
+ 1006,top50,PBISC 6k 5-seed mean,76.2,3.7013511046643495,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
12
+ 1006,top50,PBISC-VAE,78.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
13
+ 1006,top50,scSemiProfiler,56.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
14
+ 1006,top50,broadcast (input bulk),113.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
15
+ 1006,top50,diffusion_f016k_e16,81.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
16
+ 1006,top50,diffusion_f016ks1_e16,79.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
17
+ 1006,top50,diffusion_f016ks2_e16,74.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
18
+ 1006,top50,diffusion_f016ks3_e16,75.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
19
+ 1006,top50,diffusion_f016ks4_e16,72.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
20
+ 2279,logfc_r,PBISC 6k 5-seed mean,0.3327056228632508,0.0160677167611957,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
21
+ 2279,logfc_r,PBISC-VAE,0.3336816136659037,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
22
+ 2279,logfc_r,scSemiProfiler,0.2699204110614752,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
23
+ 2279,logfc_r,broadcast (input bulk),0.6431665153721157,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
24
+ 2279,logfc_r,diffusion_f016k_e16,0.3548047163709348,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
25
+ 2279,logfc_r,diffusion_f016ks1_e16,0.3355121563388878,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
26
+ 2279,logfc_r,diffusion_f016ks2_e16,0.3139723508970225,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
27
+ 2279,logfc_r,diffusion_f016ks3_e16,0.3204965329394827,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
28
+ 2279,logfc_r,diffusion_f016ks4_e16,0.3387423577699264,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
29
+ 2279,top50,PBISC 6k 5-seed mean,82.2,3.492849839314596,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
30
+ 2279,top50,PBISC-VAE,80.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
31
+ 2279,top50,scSemiProfiler,56.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
32
+ 2279,top50,broadcast (input bulk),117.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
33
+ 2279,top50,diffusion_f016k_e16,84.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
34
+ 2279,top50,diffusion_f016ks1_e16,87.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
35
+ 2279,top50,diffusion_f016ks2_e16,80.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
36
+ 2279,top50,diffusion_f016ks3_e16,82.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
37
+ 2279,top50,diffusion_f016ks4_e16,78.0,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
38
+ labels only,comp_l1,PBISC 6k 5-seed mean,0.1807636222051575,0.0031044790269114,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
39
+ labels only,comp_l1,PBISC-VAE,0.1769999357126608,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
40
+ labels only,comp_l1,scSemiProfiler,0.2643486790566219,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_broadcast.csv ADDED
@@ -0,0 +1,32 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ panel,axis_genes,group,method,value,seed_sd,source
2
+ logFC r,1006,T cell,broadcast (input bulk),0.8228774605798768,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
3
+ logFC r,1006,T cell,PBISC 6k 5-seed mean,0.5939658914718996,0.017984822057591335,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
4
+ logFC r,1006,T cell,PBISC-VAE,0.6120931230708884,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
5
+ logFC r,1006,T cell,scSemiProfiler,0.4732406545923902,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
6
+ logFC r,1006,B cell,broadcast (input bulk),0.7262511751549846,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
7
+ logFC r,1006,B cell,PBISC 6k 5-seed mean,0.4284912263950824,0.03606402307061042,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
8
+ logFC r,1006,B cell,PBISC-VAE,0.3454434132713715,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
9
+ logFC r,1006,B cell,scSemiProfiler,0.3389517989307964,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
10
+ logFC r,1006,Monocyte,broadcast (input bulk),0.6827628643425065,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
11
+ logFC r,1006,Monocyte,PBISC 6k 5-seed mean,0.44946236830281927,0.033404376214340586,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
12
+ logFC r,1006,Monocyte,PBISC-VAE,0.4666191731756177,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
13
+ logFC r,1006,Monocyte,scSemiProfiler,0.2919853598203729,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
14
+ logFC r,1006,NK cell,broadcast (input bulk),0.6611291872740064,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
15
+ logFC r,1006,NK cell,PBISC 6k 5-seed mean,0.3607223505080821,0.024088206588902265,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
16
+ logFC r,1006,NK cell,PBISC-VAE,0.3550560613632358,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
17
+ logFC r,1006,NK cell,scSemiProfiler,0.2561452598619544,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
18
+ logFC r,1006,DC,broadcast (input bulk),0.6834395795197014,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
19
+ logFC r,1006,DC,PBISC 6k 5-seed mean,0.2929133213063715,0.05744012029427325,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
20
+ logFC r,1006,DC,PBISC-VAE,0.3393093861161725,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
21
+ logFC r,1006,DC,scSemiProfiler,0.2809317373955735,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
22
+ logFC r,1006,Other,broadcast (input bulk),0.4852811037791405,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
23
+ logFC r,1006,Other,PBISC 6k 5-seed mean,0.10213249694534068,0.0561122628197401,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
24
+ logFC r,1006,Other,PBISC-VAE,0.1264099945717724,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
25
+ logFC r,1006,Other,scSemiProfiler,0.2662074091651877,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
26
+ logFC r,1006,mean,broadcast (input bulk),0.6769568951083694,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
27
+ logFC r,1006,mean,PBISC 6k 5-seed mean,0.37128127582159925,0.017657234388334934,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
28
+ logFC r,1006,mean,PBISC-VAE,0.3741551919281764,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
29
+ logFC r,1006,mean,scSemiProfiler,0.3179103699610459,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
30
+ partial r,1006,mean,PBISC 6k 5-seed mean,0.2078187026128387,0.012468388394282014,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/residual_specificity_summary.csv
31
+ partial r,1006,mean,PBISC-VAE,0.2069371737726425,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/residual_specificity_summary.csv
32
+ partial r,1006,mean,scSemiProfiler,0.1670468418224036,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/residual_specificity_summary.csv