Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/contrast/ye2026_sepsis/strict/headline.csv +6 -0
- paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/contrast/ye2026_sepsis/strict/manifest.json +562 -0
- paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/extras/ye2026_sepsis/strict/manifest.json +153 -0
- paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/score/summary.json +1887 -0
paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/contrast/ye2026_sepsis/strict/headline.csv
ADDED
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| 1 |
+
dataset,design,unit,arm,label,role,condition,pearson_r,spearman_r,partial_r,broadcast_pearson_r,broadcast_spearman_r,splithalf_r_AB,splithalf_r_AB_sd,splithalf_spearman_AB,sb_reliability,noise_free_ceiling,r_generated_vs_halfB,r_broadcast_vs_halfB,welch_top50,welch_top50_max,welch_top50_chance,welch_top50_broadcast,welch_top50_broadcast_chance,welch_n_sig_obs,welch_n_sig_gen,welch_n_sig_broadcast_per_type,welch_types_scored,limma_top50,limma_top50_max,limma_top50_chance,limma_top50_broadcast,limma_top50_broadcast_chance,limma_n_sig_obs,limma_n_sig_gen,limma_n_sig_broadcast_per_type,limma_types_scored,limma_fbe_top50,limma_fbe_top50_max,limma_fbe_top50_chance,limma_fbe_top50_broadcast,limma_fbe_top50_broadcast_chance,limma_fbe_n_sig_obs,limma_fbe_n_sig_gen,limma_fbe_n_sig_broadcast_per_type,limma_fbe_types_scored,cat50,cat50_chance,cat100,cat100_chance,rbo,rbo_up_down,cat_types,broadcast_cat50,broadcast_cat50_chance,broadcast_cat100,broadcast_cat100_chance,broadcast_rbo,broadcast_rbo_up_down,broadcast_cat_types,repro_pass
|
| 2 |
+
ye2026_sepsis,scored,strict,lora,lora,other,test_raw.npz@0c8c43a2,0.48712224362180245,0.38631516371058816,0.45028454916258376,0.3195942137906433,0.3281554472895195,0.9574026218312437,0.0019098934241358655,0.8362010756621817,0.9780919092752436,0.9889660731252368,0.4835036477079472,0.3192060690844542,15,250,2.3992993844076884,20,2.2464807713988746,7344,807,1128,5,16,250,2.7601393450812135,39,2.2464807713988746,5689,1232,727,5,23,249,7.234407507856504,32,6.131653968393001,3141,817,447,5,0.06000000000000001,0.006290940396247997,0.10200000000000001,0.012581880792495994,0.1296719996593098,0.08953179699094611,5,0.044,0.00449296154279775,0.06999999999999999,0.0089859230855955,0.07325726325735192,0.07673145995769362,5,True
|
| 3 |
+
ye2026_sepsis,scored,strict,pairedcal,pairedcal,other,test_cal.npz@b5d28934,0.04964021194274032,0.13492068307551713,-0.03802550525259634,0.2773746411939305,0.2274822067567435,0.9574026218312437,0.0019098934241358655,0.8362010756621817,0.9780919092752436,0.9889660731252368,0.05203170001278664,0.2784413118458456,7,250,2.2958073937362644,15,2.2464807713988746,7344,803,807,5,5,250,1.5998923302744699,41,2.2464807713988746,5689,487,611,5,6,249,7.283423117896442,30,6.151779568893481,3141,488,392,5,0.044,0.006389113736610823,0.054000000000000006,0.012778227473221646,0.0661719920376041,0.05193912804181268,5,0.044,0.00449296154279775,0.072,0.0089859230855955,0.07149730854686025,0.07387978045340476,5,True
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| 4 |
+
ye2026_sepsis,scored,strict,scsemi,scsemi,other,test_raw.npz@0c8c43a2,0.453002162271836,0.10612466696087679,0.3554618489885017,0.3195942137906433,0.3281554472895195,0.9574026218312437,0.0019098934241358655,0.8362010756621817,0.9780919092752436,0.9889660731252368,0.4495100154263888,0.3192060690844542,2,250,2.1399177939635967,20,2.2464807713988746,7344,62,1128,5,10,250,5.1977584805154295,39,2.2464807713988746,5689,3374,727,5,5,249,36.402793482382194,32,6.131653968393001,3141,200,447,5,0.012,0.015268578088546725,0.030000000000000006,0.03053715617709345,0.03916344449770078,0.03227742805335106,5,0.044,0.00449296154279775,0.06999999999999999,0.0089859230855955,0.07325726325735192,0.07673145995769362,5,True
|
| 5 |
+
ye2026_sepsis,scored,strict,raw,raw,other,conditions_raw.npz@36add186,-0.020973148970441904,-0.04866513962334447,-0.10412605733117683,0.3195942137906433,0.3281554472895195,0.9574026218312437,0.0019098934241358655,0.8362010756621817,0.9780919092752436,0.9889660731252368,-0.01773654830960729,0.3192060690844542,11,250,2.528722384231807,20,2.2464807713988746,7344,2265,1128,5,9,250,2.26111675042899,39,2.2464807713988746,5689,3171,727,5,8,249,6.1192956849533156,32,6.131653968393001,3141,2104,447,5,0.008,0.0059306842050833326,0.028000000000000004,0.011861368410166665,0.03304385233294036,0.02676224830316586,5,0.044,0.00449296154279775,0.06999999999999999,0.0089859230855955,0.07325726325735192,0.07673145995769362,5,True
|
| 6 |
+
ye2026_sepsis,scored,strict,refcal,refcal,other,conditions_refcal.npz@3886924b,0.14523507548470094,0.11300797002525814,0.07595597864972872,0.2421989933218182,0.18183618144650954,0.9574026218312437,0.0019098934241358655,0.8362010756621817,0.9780919092752436,0.9889660731252368,0.14612498813888614,0.24228803971145663,9,250,2.5661171975663555,12,2.2464807713988746,7344,786,883,5,10,250,2.0888032714938873,37,2.2464807713988746,5689,2311,593,5,10,249,11.087721157714718,30,6.2346144622398665,3141,411,408,5,0.024,0.006349978668835234,0.044000000000000004,0.012699957337670468,0.06053184359053865,0.05233119438169548,5,0.036,0.00449296154279775,0.06999999999999999,0.0089859230855955,0.0670909418846336,0.06993465229027716,5,True
|
paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/contrast/ye2026_sepsis/strict/manifest.json
ADDED
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@@ -0,0 +1,562 @@
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| 1 |
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{
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| 2 |
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"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
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"dataset": "ye2026_sepsis",
|
| 4 |
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"design": "scored",
|
| 5 |
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"unit": "strict",
|
| 6 |
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"written_utc": "2026-10-12T18:05:35.211183+00:00",
|
| 7 |
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"command": [
|
| 8 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw4/support.json",
|
| 11 |
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"--out",
|
| 12 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4",
|
| 13 |
+
"--action",
|
| 14 |
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"all",
|
| 15 |
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"--threads",
|
| 16 |
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"4",
|
| 17 |
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"--arm",
|
| 18 |
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"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/lora.npz",
|
| 19 |
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"--arm",
|
| 20 |
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"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/pairedcal.npz",
|
| 21 |
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"--arm",
|
| 22 |
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"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
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"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 27 |
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],
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| 28 |
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"threads": 4,
|
| 29 |
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"donors": [
|
| 30 |
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"Abd-PS04",
|
| 31 |
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"Abd-PS05",
|
| 32 |
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"Abd-PS07",
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| 33 |
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"Abd-PS19",
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| 34 |
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"Abd-PS20",
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| 35 |
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"Abd-PS23",
|
| 36 |
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"Abd-PS27",
|
| 37 |
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"Abd-S103",
|
| 38 |
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"Abd-S120",
|
| 39 |
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"Abd-S123",
|
| 40 |
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"Abd-S156",
|
| 41 |
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"Abd-S39",
|
| 42 |
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"Abd-S42",
|
| 43 |
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"Abd-S47",
|
| 44 |
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"Abd-S51",
|
| 45 |
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"Abd-S54",
|
| 46 |
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"Abd-S57",
|
| 47 |
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"Abd-S66",
|
| 48 |
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"Abd-S79",
|
| 49 |
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"Abd-S83",
|
| 50 |
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"Abd-S98",
|
| 51 |
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"HC01",
|
| 52 |
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"HC05",
|
| 53 |
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"HC07",
|
| 54 |
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"HC09",
|
| 55 |
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"HC12",
|
| 56 |
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"HC13",
|
| 57 |
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"HC16",
|
| 58 |
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"IC10",
|
| 59 |
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"IC15",
|
| 60 |
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"IC16",
|
| 61 |
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"IC19",
|
| 62 |
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"IC22",
|
| 63 |
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"PHC01",
|
| 64 |
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"PHC02",
|
| 65 |
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"PHC03",
|
| 66 |
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"PHC05",
|
| 67 |
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"PIC01",
|
| 68 |
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"PIC02",
|
| 69 |
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"PIC04",
|
| 70 |
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"PIC05",
|
| 71 |
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"Res-PS02",
|
| 72 |
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"Res-PS03",
|
| 73 |
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"Res-PS12",
|
| 74 |
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"Res-PS16",
|
| 75 |
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"Res-PS21",
|
| 76 |
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"Res-PS25",
|
| 77 |
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"Res-PS26",
|
| 78 |
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"Res-S10",
|
| 79 |
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"Res-S125",
|
| 80 |
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"Res-S127",
|
| 81 |
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"Res-S136",
|
| 82 |
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"Res-S139",
|
| 83 |
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"Res-S146",
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| 84 |
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"Res-S149",
|
| 85 |
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"Res-S150",
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| 86 |
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"Res-S164",
|
| 87 |
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"Res-S166",
|
| 88 |
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"Res-S174",
|
| 89 |
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"Res-S177",
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| 90 |
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"Res-S184",
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| 91 |
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"Res-S19",
|
| 92 |
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"Res-S26",
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| 93 |
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"Res-S40",
|
| 94 |
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"Res-S77",
|
| 95 |
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"Res-S87",
|
| 96 |
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"Skin-S140",
|
| 97 |
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"Skin-S152",
|
| 98 |
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"Skin-S38",
|
| 99 |
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"Skin-S43",
|
| 100 |
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"Skin-S52",
|
| 101 |
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"Skin-S74",
|
| 102 |
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"Uri-S134",
|
| 103 |
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"Uri-S147",
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| 104 |
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"Uri-S157",
|
| 105 |
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"Uri-S20",
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| 106 |
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"Uri-S93"
|
| 107 |
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| 108 |
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| 109 |
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"contrast": {
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| 110 |
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"case_groups": [
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| 111 |
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"adult_sepsis",
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| 112 |
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"ped_sepsis"
|
| 113 |
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],
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| 114 |
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"control_groups": [
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| 115 |
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"adult_HC",
|
| 116 |
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"adult_ICU_ctrl",
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| 117 |
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"ped_HC",
|
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| 122 |
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},
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| 123 |
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"calls": {
|
| 124 |
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| 125 |
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"arms": [
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| 126 |
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"lora",
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| 127 |
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"pairedcal",
|
| 128 |
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"scsemi",
|
| 129 |
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"raw",
|
| 130 |
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"refcal"
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| 131 |
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],
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| 132 |
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"summary_sha256": "c2620874b8a5fde37fb43676abf8b92bf73dc8e7a69906be761cefda8101c950",
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| 134 |
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}
|
| 135 |
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},
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| 136 |
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"notes": {
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| 137 |
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"source_tree": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores"
|
| 138 |
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},
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| 139 |
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"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
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| 140 |
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"deg_reference": {
|
| 141 |
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"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis/deg_reference.npz",
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"sha256": "9886ea64da90b1db6a07984d5d61d7dab04ee0beee7d4094ee3672316c2691d0"
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"gene_exclusion": null,
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"T cell": 3259,
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"arms": {
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| 154 |
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"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/score",
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"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/lora.npz",
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"seconds": 11.8
|
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"observed_cells": {
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"inputs_sha256": {
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paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/extras/ye2026_sepsis/strict/manifest.json
ADDED
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|
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|
|
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|
|
|
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|
|
|
|
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|
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|
|
|
|
|
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|
|
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_extra_metrics.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-12T18:04:09.686278+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw4/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4",
|
| 13 |
+
"--action",
|
| 14 |
+
"all",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
+
"Abd-PS04",
|
| 31 |
+
"Abd-PS05",
|
| 32 |
+
"Abd-PS07",
|
| 33 |
+
"Abd-PS19",
|
| 34 |
+
"Abd-PS20",
|
| 35 |
+
"Abd-PS23",
|
| 36 |
+
"Abd-PS27",
|
| 37 |
+
"Abd-S103",
|
| 38 |
+
"Abd-S120",
|
| 39 |
+
"Abd-S123",
|
| 40 |
+
"Abd-S156",
|
| 41 |
+
"Abd-S39",
|
| 42 |
+
"Abd-S42",
|
| 43 |
+
"Abd-S47",
|
| 44 |
+
"Abd-S51",
|
| 45 |
+
"Abd-S54",
|
| 46 |
+
"Abd-S57",
|
| 47 |
+
"Abd-S66",
|
| 48 |
+
"Abd-S79",
|
| 49 |
+
"Abd-S83",
|
| 50 |
+
"Abd-S98",
|
| 51 |
+
"HC01",
|
| 52 |
+
"HC05",
|
| 53 |
+
"HC07",
|
| 54 |
+
"HC09",
|
| 55 |
+
"HC12",
|
| 56 |
+
"HC13",
|
| 57 |
+
"HC16",
|
| 58 |
+
"IC10",
|
| 59 |
+
"IC15",
|
| 60 |
+
"IC16",
|
| 61 |
+
"IC19",
|
| 62 |
+
"IC22",
|
| 63 |
+
"PHC01",
|
| 64 |
+
"PHC02",
|
| 65 |
+
"PHC03",
|
| 66 |
+
"PHC05",
|
| 67 |
+
"PIC01",
|
| 68 |
+
"PIC02",
|
| 69 |
+
"PIC04",
|
| 70 |
+
"PIC05",
|
| 71 |
+
"Res-PS02",
|
| 72 |
+
"Res-PS03",
|
| 73 |
+
"Res-PS12",
|
| 74 |
+
"Res-PS16",
|
| 75 |
+
"Res-PS21",
|
| 76 |
+
"Res-PS25",
|
| 77 |
+
"Res-PS26",
|
| 78 |
+
"Res-S10",
|
| 79 |
+
"Res-S125",
|
| 80 |
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"Res-S127",
|
| 81 |
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"Res-S136",
|
| 82 |
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"Res-S139",
|
| 83 |
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"Res-S146",
|
| 84 |
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"Res-S149",
|
| 85 |
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"Res-S150",
|
| 86 |
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"Res-S164",
|
| 87 |
+
"Res-S166",
|
| 88 |
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"Res-S174",
|
| 89 |
+
"Res-S177",
|
| 90 |
+
"Res-S184",
|
| 91 |
+
"Res-S19",
|
| 92 |
+
"Res-S26",
|
| 93 |
+
"Res-S40",
|
| 94 |
+
"Res-S77",
|
| 95 |
+
"Res-S87",
|
| 96 |
+
"Skin-S140",
|
| 97 |
+
"Skin-S152",
|
| 98 |
+
"Skin-S38",
|
| 99 |
+
"Skin-S43",
|
| 100 |
+
"Skin-S52",
|
| 101 |
+
"Skin-S74",
|
| 102 |
+
"Uri-S134",
|
| 103 |
+
"Uri-S147",
|
| 104 |
+
"Uri-S157",
|
| 105 |
+
"Uri-S20",
|
| 106 |
+
"Uri-S93"
|
| 107 |
+
],
|
| 108 |
+
"n_samples": 77,
|
| 109 |
+
"calls": {
|
| 110 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/score": {
|
| 111 |
+
"arms": [
|
| 112 |
+
"lora",
|
| 113 |
+
"pairedcal",
|
| 114 |
+
"scsemi",
|
| 115 |
+
"raw",
|
| 116 |
+
"refcal"
|
| 117 |
+
],
|
| 118 |
+
"summary_sha256": "c2620874b8a5fde37fb43676abf8b92bf73dc8e7a69906be761cefda8101c950"
|
| 119 |
+
}
|
| 120 |
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},
|
| 121 |
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"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
|
| 122 |
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"bandwidth_m": 27.82667328158684,
|
| 123 |
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"params": {
|
| 124 |
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"seed": 20261001,
|
| 125 |
+
"ks": [
|
| 126 |
+
3,
|
| 127 |
+
5,
|
| 128 |
+
10
|
| 129 |
+
],
|
| 130 |
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"knn_c2st_k": 5,
|
| 131 |
+
"rf_trees": 300,
|
| 132 |
+
"cv_folds": 5,
|
| 133 |
+
"bw_multiples": [
|
| 134 |
+
0.5,
|
| 135 |
+
1.0,
|
| 136 |
+
2.0
|
| 137 |
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],
|
| 138 |
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"bw_max_cells": 4000,
|
| 139 |
+
"en_pcs": 100,
|
| 140 |
+
"en_lb_max_queries_all_cells": 20000,
|
| 141 |
+
"en_all_cells": true
|
| 142 |
+
},
|
| 143 |
+
"n_representative_rows": null,
|
| 144 |
+
"fetched_from_server2": [],
|
| 145 |
+
"code_sha256": {
|
| 146 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/extra_metrics.py": "e76a6cd4c1c5ef7184e97755edcd0f48726b56ba251545a5b5a4b12bb766b0c2",
|
| 147 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
|
| 148 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 149 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da"
|
| 150 |
+
},
|
| 151 |
+
"seconds": 1350.9,
|
| 152 |
+
"max_abs_diff_k10_pooled": 0.0
|
| 153 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261013T115045Z-figure-strengthening-154/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/strengthening_20261013/disease_metrics/source_snapshot/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/score/summary.json
ADDED
|
@@ -0,0 +1,1887 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"written_utc": "2026-10-12T17:41:38.799629+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"ye2026_sepsis",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/score",
|
| 11 |
+
"--donors",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/test_sample_ids.txt",
|
| 13 |
+
"--threads",
|
| 14 |
+
"4",
|
| 15 |
+
"--arm",
|
| 16 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/lora.npz",
|
| 17 |
+
"--arm",
|
| 18 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/pairedcal.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/scsemi.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz",
|
| 25 |
+
"--case-groups",
|
| 26 |
+
"adult_sepsis,ped_sepsis",
|
| 27 |
+
"--control-groups",
|
| 28 |
+
"adult_HC,adult_ICU_ctrl,ped_HC,ped_ICU_ctrl"
|
| 29 |
+
],
|
| 30 |
+
"arms": [
|
| 31 |
+
"lora",
|
| 32 |
+
"pairedcal",
|
| 33 |
+
"scsemi",
|
| 34 |
+
"raw",
|
| 35 |
+
"refcal"
|
| 36 |
+
],
|
| 37 |
+
"donors": [
|
| 38 |
+
"Abd-PS04",
|
| 39 |
+
"Abd-PS05",
|
| 40 |
+
"Abd-PS07",
|
| 41 |
+
"Abd-PS19",
|
| 42 |
+
"Abd-PS20",
|
| 43 |
+
"Abd-PS23",
|
| 44 |
+
"Abd-PS27",
|
| 45 |
+
"Abd-S103",
|
| 46 |
+
"Abd-S120",
|
| 47 |
+
"Abd-S123",
|
| 48 |
+
"Abd-S156",
|
| 49 |
+
"Abd-S39",
|
| 50 |
+
"Abd-S42",
|
| 51 |
+
"Abd-S47",
|
| 52 |
+
"Abd-S51",
|
| 53 |
+
"Abd-S54",
|
| 54 |
+
"Abd-S57",
|
| 55 |
+
"Abd-S66",
|
| 56 |
+
"Abd-S79",
|
| 57 |
+
"Abd-S83",
|
| 58 |
+
"Abd-S98",
|
| 59 |
+
"HC01",
|
| 60 |
+
"HC05",
|
| 61 |
+
"HC07",
|
| 62 |
+
"HC09",
|
| 63 |
+
"HC12",
|
| 64 |
+
"HC13",
|
| 65 |
+
"HC16",
|
| 66 |
+
"IC10",
|
| 67 |
+
"IC15",
|
| 68 |
+
"IC16",
|
| 69 |
+
"IC19",
|
| 70 |
+
"IC22",
|
| 71 |
+
"PHC01",
|
| 72 |
+
"PHC02",
|
| 73 |
+
"PHC03",
|
| 74 |
+
"PHC05",
|
| 75 |
+
"PIC01",
|
| 76 |
+
"PIC02",
|
| 77 |
+
"PIC04",
|
| 78 |
+
"PIC05",
|
| 79 |
+
"Res-PS02",
|
| 80 |
+
"Res-PS03",
|
| 81 |
+
"Res-PS12",
|
| 82 |
+
"Res-PS16",
|
| 83 |
+
"Res-PS21",
|
| 84 |
+
"Res-PS25",
|
| 85 |
+
"Res-PS26",
|
| 86 |
+
"Res-S10",
|
| 87 |
+
"Res-S125",
|
| 88 |
+
"Res-S127",
|
| 89 |
+
"Res-S136",
|
| 90 |
+
"Res-S139",
|
| 91 |
+
"Res-S146",
|
| 92 |
+
"Res-S149",
|
| 93 |
+
"Res-S150",
|
| 94 |
+
"Res-S164",
|
| 95 |
+
"Res-S166",
|
| 96 |
+
"Res-S174",
|
| 97 |
+
"Res-S177",
|
| 98 |
+
"Res-S184",
|
| 99 |
+
"Res-S19",
|
| 100 |
+
"Res-S26",
|
| 101 |
+
"Res-S40",
|
| 102 |
+
"Res-S77",
|
| 103 |
+
"Res-S87",
|
| 104 |
+
"Skin-S140",
|
| 105 |
+
"Skin-S152",
|
| 106 |
+
"Skin-S38",
|
| 107 |
+
"Skin-S43",
|
| 108 |
+
"Skin-S52",
|
| 109 |
+
"Skin-S74",
|
| 110 |
+
"Uri-S134",
|
| 111 |
+
"Uri-S147",
|
| 112 |
+
"Uri-S157",
|
| 113 |
+
"Uri-S20",
|
| 114 |
+
"Uri-S93"
|
| 115 |
+
],
|
| 116 |
+
"n_donors": 77,
|
| 117 |
+
"reference": {
|
| 118 |
+
"cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis",
|
| 119 |
+
"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
|
| 120 |
+
"features_sha256": "0cfda4b0cf1caf5e5319d071697c228d894e992fd090e2b3ed450bd6c9887d46",
|
| 121 |
+
"n_r1_cells": 11550,
|
| 122 |
+
"pca": {
|
| 123 |
+
"n_components": 50,
|
| 124 |
+
"explained_variance_ratio_sum": 0.3349785804748535,
|
| 125 |
+
"n_fit_cells": 11550
|
| 126 |
+
},
|
| 127 |
+
"r2_control": {
|
| 128 |
+
"precision": 0.9806926406926407,
|
| 129 |
+
"coverage": 0.9997402597402597,
|
| 130 |
+
"density": 1.3077229437229438,
|
| 131 |
+
"n_query": 11550,
|
| 132 |
+
"depth_matched": {
|
| 133 |
+
"precision": 0.9794805194805195,
|
| 134 |
+
"coverage": 0.9998268398268398,
|
| 135 |
+
"density": 1.302865800865801
|
| 136 |
+
}
|
| 137 |
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