Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw2/summary.json

@@ -0,0 +1,147 @@
+{
+ "dataset": "ji2025_chili",
+ "comparison": "fewshot",
+ "draw": 2,
+ "gene_mode": "score",
+ "stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw2",
+ "lora_arm": "lora5",
+ "n_donors": 26,
+ "contrast": true,
+ "genes_scoring": 5752,
+ "genes_covered_by_Z_all_donors": 5646,
+ "bayesprism": {
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+  "partial_r_mean_cp10k": 0.009427337713952683,
+  "logfc_r_mean_cp10k_covered_genes": 0.20487837856844668,
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+  "deg_top50_sum_covered_genes": 2,
+  "per_type_logfc_r": {
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+ "observed_mean_fraction": {
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+ "lora": {
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+  "partial_r_mean_cp10k": 0.24803917247992743
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+ "broadcast": {
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+ "other_arms": {
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+ "gates": {
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+ "n_case": 16,
+ "n_control": 10,
+ "deg_per_type": {
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+ "tool_sha256": "15ed044bbfc39c501c7187ad78586902f2aa0635e7b3a90786b4587cedc2008a",
+ "score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+ "seconds": 0.8
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw2_cibersortx/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
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+zero_filled,T cell,pseudobulk_log1p_cpm,3072,,0.29511657864157254,,
+zero_filled,B cell,mean_cp10k,3277,,0.15572870002588607,,
+zero_filled,B cell,pseudobulk_log1p_cpm,3277,,0.06708509712458424,,
+zero_filled,Monocyte,mean_cp10k,3152,0.07723750314871787,0.37567927431475395,-0.02074677426733286,0.25508070707079916
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3152,0.05003248956279215,0.33780407869585316,-0.055715661245898745,0.2963756712257747
+zero_filled,NK cell,mean_cp10k,3069,,0.2533010131298753,,
+zero_filled,NK cell,pseudobulk_log1p_cpm,3069,,0.1357496033139099,,
+covered,T cell,mean_cp10k,0,,,,
+covered,T cell,pseudobulk_log1p_cpm,0,,,,
+covered,B cell,mean_cp10k,0,,,,
+covered,B cell,pseudobulk_log1p_cpm,0,,,,
+covered,Monocyte,mean_cp10k,1047,0.16320470924144997,0.2822336169654617,0.017741457762872226,0.5270100241844768
+covered,Monocyte,pseudobulk_log1p_cpm,1047,0.11852304305552455,0.17534359021561985,0.014972382445335546,0.6092873680240519
+covered,NK cell,mean_cp10k,0,,,,
+covered,NK cell,pseudobulk_log1p_cpm,0,,,,

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw2_cibersortx/per_donor.csv

@@ -0,0 +1,27 @@
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw2_cibersortx/summary.json

@@ -0,0 +1,157 @@
+{
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