Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n10/lora/scoring_support.json +67 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/receipts/score.json +61 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/per_donor.csv +22 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/summary.json +214 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n10/lora/scoring_support.json
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{
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"schema": "pbisc.paper.strict-score-binding.v1",
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"support_sha256": "6b42beb22dbd81bfe90a640c7061888be83ef668d4ba6fbbe7943e5a1b3d7a33",
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"cohort": "immicro",
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"unit": "fold2_n10",
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"test_sample_ids": [
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"HS9",
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"HS14",
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"HS19",
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"HS24",
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"HS25",
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"HS26",
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"HS32",
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"HS42",
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"HS43",
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"HS50",
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"HS55",
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"HS59",
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"HS67",
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"HS71",
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"HS73",
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"HS80",
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"HS91",
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"HS102",
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"HS105",
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"HS108",
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"HS111"
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],
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"test_donor_ids": [
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"HS9",
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"HS14",
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"HS19",
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"HS24",
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"HS25",
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"HS26",
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"HS32",
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"HS42",
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"HS43",
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"HS50",
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"HS55",
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"HS59",
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"HS67",
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"HS71",
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"HS73",
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"HS80",
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"HS91",
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"HS102",
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"HS105",
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"HS108",
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"HS111"
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],
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"arm_bindings": {
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"lora": {
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"arm": "lora",
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold2/n10/lora.npz",
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"npz_sha256": "2b40d370e9a4ea07a0fb164cb73f79a35443cc2d92e9200fc43a1cb95d897a51",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold2/n10/lora.log",
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| 58 |
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"receipt_sha256": "59024565f7155d92267398159d744c10ad6b51a54b74998ab83395c4ccfbfa0c",
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| 59 |
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"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold2/n10/lora/RUN.json",
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"source_binding_sha256": "4ce2a47a85904cb2cf966fdf5cfd3dc0789d426dc2450b40eb1c47bc4612a3c7",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold2/n10/test_raw.npz",
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| 62 |
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"condition_sha256": "35792517469285bed0fd17595441952e8f1880f63022e10db66e74dc36cd585f",
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| 63 |
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"checkpoint_sha256": "35af617f08f2e299096d799a6e91be2f9a3e3c0fb47ead534f51f99babe9a58b",
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| 64 |
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"support_sha256": "6b42beb22dbd81bfe90a640c7061888be83ef668d4ba6fbbe7943e5a1b3d7a33"
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}
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}
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/receipts/score.json
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{
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"state": "completed",
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"stage": "score",
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"at": "2026-10-15T11:42:18.145769+00:00",
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"outputs": [
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/arms/lora/generated_cells.parquet",
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"sha256": "ea7b634f9c7a08d796533c58070623c2f1aa0fd954d6582e9c455d978c4dd532",
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"bytes": 276263
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/arms/lora/labels/labels.manifest.json",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/arms/lora/labels/labels.parquet",
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"bytes": 751788
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/per_donor.csv",
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"bytes": 8628
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/summary.json",
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/scoring_support.json",
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"support_sha256": "bd9c9fcca2102a403eec20242ecd5e3184be33095e3d37a60e0bca1c32c06c7d",
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"binding": {
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| 39 |
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"arm": "lora",
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| 40 |
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold2/n5/lora.npz",
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"npz_sha256": "9db828f963f7e4f04ede0c3e8d23ecffb5ad522fed0bdb8da3e67b621a265e04",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold2/n5/lora.log",
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| 43 |
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"receipt_sha256": "27ee0a6fc79dbd7884814777dacf4c71fb10e33a7c4790d44224c84f02feca36",
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| 44 |
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"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold2/n5/lora/RUN.json",
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| 45 |
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"source_binding_sha256": "f6485b0944f40e535eaf1e9fd108d63aa9375293e569312632ee25d2c8d3b367",
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| 46 |
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold2/n5/test_raw.npz",
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| 47 |
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"condition_sha256": "35792517469285bed0fd17595441952e8f1880f63022e10db66e74dc36cd585f",
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"checkpoint_sha256": "f4bcc2b5d2e63c4303a82f0888983f6760bfee883798284adf6773285c97589a",
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"support_sha256": "bd9c9fcca2102a403eec20242ecd5e3184be33095e3d37a60e0bca1c32c06c7d"
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| 50 |
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},
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| 51 |
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"reuse": {
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| 52 |
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"source_summary": {
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| 53 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold2/n5/score/summary.json",
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"sha256": "5d91950ad7423f54c7276a0ac7032642038de607b04d7ade7c837e5e890d7a20",
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| 55 |
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"bytes": 7666
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| 56 |
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},
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| 57 |
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"source_arm": "lora",
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| 58 |
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"validated_support_sha256": "bd9c9fcca2102a403eec20242ecd5e3184be33095e3d37a60e0bca1c32c06c7d",
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| 59 |
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"annotation_reexecuted": false
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| 60 |
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}
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| 61 |
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/per_donor.csv
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arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
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| 2 |
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lora,HS9,DB3,1500,3942,150,0.7353333333333333,0.6958396752917301,0.06,0.0286656519533231,0.128,0.1867072552004058,0.04,0.0499746321664129,0.03,0.0337392186707255,0.0066666666666666,0.0050735667174023,0.1448422120750887,0.2191337025558536,0.9124429478899928,1,True,0.9866666666666668,0.98,0.9933333333333332,1.0,12.8,18.670725520040587,2719.0,2389.0
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| 3 |
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lora,HS14,DB3,1500,4235,150,0.6573333333333333,0.6517119244391971,0.0853333333333333,0.0651711924439197,0.1746666666666666,0.2030696576151121,0.0433333333333333,0.0425029515938606,0.032,0.0332939787485242,0.0073333333333333,0.004250295159386,0.0593939393939394,0.159891466999795,0.9083612584729348,4,False,0.9933333333333332,0.9466666666666668,1.0,1.0,17.466666666666665,20.30696576151122,2434.5,2164.0
|
| 4 |
+
lora,HS19,DB5,1500,4133,150,0.7226666666666667,0.5971449310428261,0.0853333333333333,0.1454149528187757,0.1306666666666666,0.1468666827969997,0.0293333333333333,0.0914589886281151,0.0246666666666666,0.0142753447858698,0.0073333333333333,0.0048390999274135,0.2768145818211146,0.1429188316858808,0.8991593750112479,10,False,0.9933333333333332,0.8466666666666667,1.0,0.9933333333333332,13.066666666666665,14.686668279699976,2672.5,1955.0
|
| 5 |
+
lora,HS24,DB6,1500,1670,150,0.6406666666666667,0.5365269461077844,0.0566666666666666,0.0700598802395209,0.21,0.1766467065868263,0.0533333333333333,0.1940119760479041,0.0326666666666666,0.0179640718562874,0.0066666666666666,0.0047904191616766,0.3081437125748503,0.2194523355229991,0.9042897539647105,9,False,1.0,0.8333333333333334,1.0,0.9866666666666668,21.0,17.664670658682635,2843.0,2073.5
|
| 6 |
+
lora,HS25,DB6,1500,1800,150,0.56,0.4872222222222222,0.0833333333333333,0.095,0.2586666666666666,0.3033333333333333,0.034,0.0844444444444444,0.042,0.0261111111111111,0.022,0.0038888888888888,0.2135555555555556,0.345557515096265,0.8923984353756487,10,False,0.9866666666666668,0.8666666666666667,0.98,0.9866666666666668,25.866666666666667,30.333333333333336,1860.0,2173.0
|
| 7 |
+
lora,HS26,DB2,1500,3606,150,0.7746666666666666,0.651414309484193,0.0613333333333333,0.0540765391014975,0.092,0.1616749861342207,0.0433333333333333,0.0967831392124237,0.024,0.0268996117581808,0.0046666666666666,0.0091514143094841,0.2610183028286189,0.0667480048970103,0.9076003726714716,4,False,0.9933333333333332,1.0,1.0,1.0,9.2,16.167498613422072,2725.5,1454.5
|
| 8 |
+
lora,HS32,DB6,1500,1818,150,0.6973333333333334,0.7128712871287128,0.0813333333333333,0.0753575357535753,0.1653333333333333,0.1303630363036303,0.028,0.0605060506050605,0.022,0.0192519251925192,0.006,0.0016501650165016,0.09608800880088,0.175285741287662,0.9073140478753992,9,False,0.98,0.8666666666666667,0.9933333333333332,0.9866666666666668,16.53333333333333,13.036303630363037,2524.0,2078.5
|
| 9 |
+
lora,HS42,DB1,1500,4312,150,0.6646666666666666,0.700139146567718,0.084,0.034786641929499,0.1806666666666666,0.1832096474953617,0.0313333333333333,0.0433673469387755,0.034,0.0296846011131725,0.0053333333333333,0.008812615955473,0.1070575139146568,0.2194299527328683,0.9118452012867596,3,False,0.9933333333333332,1.0,1.0,1.0,18.066666666666663,18.320964749536177,2704.0,1957.5
|
| 10 |
+
lora,HS43,DB5,1500,4357,150,0.7433333333333333,0.6584806059215056,0.0633333333333333,0.071149873766353,0.142,0.1383979802616479,0.028,0.1122331879733761,0.0166666666666666,0.0174431948588478,0.0066666666666666,0.0022951572182694,0.1856525131971539,0.0756542453739197,0.9051465780796834,11,False,0.9866666666666668,0.9333333333333332,1.0,0.9933333333333332,14.2,13.839798026164791,2923.0,2180.0
|
| 11 |
+
lora,HS50,DB5,1500,4299,150,0.778,0.6882996045591998,0.0813333333333333,0.0821121190974645,0.0846666666666666,0.1197953012328448,0.034,0.0921144452198185,0.016,0.0132588974180041,0.006,0.004419632472668,0.1880437311002558,0.133668088762812,0.9025964411354264,9,False,0.9866666666666668,0.9333333333333332,0.9933333333333332,0.9933333333333332,8.466666666666667,11.979530123284484,2920.0,2077.0
|
| 12 |
+
lora,HS55,DB1,1500,4574,150,0.634,0.6228683865325755,0.0526666666666666,0.0424136423261915,0.1933333333333333,0.2243113248797551,0.0526666666666666,0.0843900306077831,0.0406666666666666,0.019676432006996,0.0266666666666666,0.0063401836466987,0.1254027109750765,0.1351585700607153,0.904065283291049,1,True,0.9733333333333334,0.9933333333333332,0.9933333333333332,1.0,19.33333333333333,22.431132487975518,2712.5,1849.0
|
| 13 |
+
lora,HS59,DB4,1500,4268,150,0.6326666666666667,0.5796626054358013,0.072,0.0611527647610121,0.2113333333333333,0.2186035613870665,0.0473333333333333,0.1187910028116213,0.0273333333333333,0.0161668228678537,0.0093333333333333,0.0056232427366447,0.1574557950640425,0.150027036596664,0.8931525160576173,18,False,1.0,0.94,0.9933333333333332,1.0,21.133333333333333,21.860356138706656,2384.0,2091.5
|
| 14 |
+
lora,HS67,DB2,1500,3971,150,0.666,0.6293125157391085,0.1146666666666666,0.1095441954167716,0.1106666666666666,0.1392596323344245,0.0553333333333333,0.0939309997481742,0.0353333333333333,0.0188869302442709,0.018,0.00906572651725,0.1343812641651977,0.0752488068702978,0.9043110167468502,6,False,0.9933333333333332,0.9933333333333332,1.0,1.0,11.066666666666666,13.925963233442456,2563.0,1563.0
|
| 15 |
+
lora,HS71,DB4,1500,4400,150,0.746,0.571590909090909,0.0586666666666666,0.0886363636363636,0.1006666666666666,0.1047727272727272,0.0646666666666666,0.214090909090909,0.0213333333333333,0.0170454545454545,0.0086666666666666,0.0038636363636363,0.367,0.2521739433710278,0.8933108911557596,13,False,0.9933333333333332,0.9266666666666666,0.9933333333333332,0.9933333333333332,10.066666666666666,10.477272727272728,2505.0,1825.0
|
| 16 |
+
lora,HS73,DB2,1500,4209,150,0.7086666666666667,0.5915894511760513,0.0353333333333333,0.0753148016155856,0.13,0.1066761701116654,0.0653333333333333,0.2007602755999049,0.0353333333333333,0.0206699928724162,0.0253333333333333,0.0049893086243763,0.3508168210976479,0.2004958186371034,0.8965642744179405,1,True,0.98,0.9933333333333332,0.9733333333333334,1.0,13.0,10.667617011166548,2030.0,1262.0
|
| 17 |
+
lora,HS80,DB3,1500,4301,150,0.664,0.6842594745408045,0.1573333333333333,0.1057893513136479,0.1126666666666666,0.1441525226691467,0.0273333333333333,0.0402232039060683,0.0246666666666666,0.0202278539874447,0.014,0.0053475935828877,0.129270402232039,0.174906003378167,0.9065467671476484,1,True,1.0,0.98,1.0,1.0,11.266666666666666,14.415252266914672,2545.5,2305.0
|
| 18 |
+
lora,HS91,DB6,1500,2568,150,0.7466666666666667,0.6320093457943925,0.0573333333333333,0.043613707165109,0.1486666666666666,0.1627725856697819,0.028,0.1269470404984423,0.0126666666666666,0.0272585669781931,0.0066666666666666,0.0073987538940809,0.2567538940809969,0.0708637841868189,0.90153201494137,14,False,0.9933333333333332,0.8733333333333333,1.0,0.96,14.866666666666667,16.27725856697819,2844.0,2112.0
|
| 19 |
+
lora,HS102,DB7,1500,1983,150,0.6293333333333333,0.6283408976298538,0.0933333333333333,0.10791729702471,0.2,0.1739788199697428,0.038,0.064548663640948,0.0226666666666666,0.0176500252143217,0.0166666666666666,0.0075642965204236,0.0822652546646494,0.0962047013028547,0.8958088441985713,11,False,0.98,0.8866666666666667,0.9866666666666668,0.9866666666666668,20.0,17.39788199697428,2532.5,2275.0
|
| 20 |
+
lora,HS105,DB4,1500,4489,150,0.718,0.6277567386945868,0.0933333333333333,0.089775005569169,0.1326666666666666,0.1396747605257295,0.028,0.1200712853642236,0.0193333333333333,0.0182668745823123,0.0086666666666666,0.0044553352639786,0.198158758446573,0.0571238816038798,0.9032160317632696,13,False,0.98,0.9666666666666668,0.9933333333333332,1.0,13.266666666666666,13.967476052572955,2741.5,2019.0
|
| 21 |
+
lora,HS108,DB7,1500,1868,150,0.7146666666666667,0.5931477516059958,0.084,0.0883297644539614,0.1033333333333333,0.0861884368308351,0.058,0.2023554603854389,0.0246666666666666,0.0235546038543897,0.0153333333333333,0.006423982869379,0.2973704496788008,0.2329681038525285,0.8926980726971625,13,False,0.9933333333333332,0.8666666666666667,0.9933333333333332,0.9866666666666668,10.333333333333334,8.618843683083512,2716.5,2026.0
|
| 22 |
+
lora,HS111,DB1,1500,4787,150,0.6666666666666666,0.6772508878211824,0.0893333333333333,0.0902444119490286,0.1566666666666666,0.1278462502611238,0.0406666666666666,0.077501566743263,0.0373333333333333,0.0236055984959264,0.0093333333333333,0.0035512847294756,0.0966603996936147,0.1316222443264233,0.9098711246861734,4,False,0.98,1.0,0.9866666666666668,1.0,15.666666666666668,12.784625026112389,2569.5,1865.0
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/summary.json
ADDED
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "immicro",
|
| 4 |
+
"written_utc": "2026-10-15T09:51:05.154099+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"immicro",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold2/n5/score",
|
| 11 |
+
"--arm",
|
| 12 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold2/n5/lora.npz",
|
| 13 |
+
"--condition",
|
| 14 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold2/n5/test_raw.npz",
|
| 15 |
+
"--donors",
|
| 16 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold2/n5/test_samples.txt",
|
| 17 |
+
"--threads",
|
| 18 |
+
"2",
|
| 19 |
+
"--no-contrast",
|
| 20 |
+
"--no-deg"
|
| 21 |
+
],
|
| 22 |
+
"arms": [
|
| 23 |
+
"lora"
|
| 24 |
+
],
|
| 25 |
+
"donors": [
|
| 26 |
+
"HS9",
|
| 27 |
+
"HS14",
|
| 28 |
+
"HS19",
|
| 29 |
+
"HS24",
|
| 30 |
+
"HS25",
|
| 31 |
+
"HS26",
|
| 32 |
+
"HS32",
|
| 33 |
+
"HS42",
|
| 34 |
+
"HS43",
|
| 35 |
+
"HS50",
|
| 36 |
+
"HS55",
|
| 37 |
+
"HS59",
|
| 38 |
+
"HS67",
|
| 39 |
+
"HS71",
|
| 40 |
+
"HS73",
|
| 41 |
+
"HS80",
|
| 42 |
+
"HS91",
|
| 43 |
+
"HS102",
|
| 44 |
+
"HS105",
|
| 45 |
+
"HS108",
|
| 46 |
+
"HS111"
|
| 47 |
+
],
|
| 48 |
+
"n_donors": 21,
|
| 49 |
+
"reference": {
|
| 50 |
+
"cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/immicro",
|
| 51 |
+
"reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
|
| 52 |
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"features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
|
| 53 |
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"n_r1_cells": 3150,
|
| 54 |
+
"pca": {
|
| 55 |
+
"n_components": 50,
|
| 56 |
+
"explained_variance_ratio_sum": 0.30105963349342346,
|
| 57 |
+
"n_fit_cells": 3150
|
| 58 |
+
},
|
| 59 |
+
"r2_control": {
|
| 60 |
+
"precision": 0.9942857142857143,
|
| 61 |
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"coverage": 1.0,
|
| 62 |
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"density": 2.6246666666666667,
|
| 63 |
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"n_query": 3150,
|
| 64 |
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"depth_matched": {
|
| 65 |
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"precision": 0.993015873015873,
|
| 66 |
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"coverage": 1.0,
|
| 67 |
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"density": 2.614920634920635
|
| 68 |
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}
|
| 69 |
+
},
|
| 70 |
+
"observed_l1_loo_null_mean": 0.15878727519531177
|
| 71 |
+
},
|
| 72 |
+
"contrast_definition": {
|
| 73 |
+
"enabled": false,
|
| 74 |
+
"reason": "--no-contrast"
|
| 75 |
+
},
|
| 76 |
+
"deg_definition": {
|
| 77 |
+
"enabled": false,
|
| 78 |
+
"reason": "--no-deg"
|
| 79 |
+
},
|
| 80 |
+
"headline": {
|
| 81 |
+
"lora": {
|
| 82 |
+
"comp_l1": 0.19219742006479776,
|
| 83 |
+
"comp_l1_obs_loo_null": 0.15878727519531177,
|
| 84 |
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"precision": 0.9888888888888889,
|
| 85 |
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"coverage": 0.9346031746031747,
|
| 86 |
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"precision_dm": 0.993968253968254,
|
| 87 |
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"coverage_dm": 0.9936507936507937,
|
| 88 |
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"pb_r_median": 0.904065283291049,
|
| 89 |
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"pb_top1": 0.19047619047619047,
|
| 90 |
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"mono_pct_gen": 15.07936507936508,
|
| 91 |
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"mono_pct_obs": 16.087149423201815,
|
| 92 |
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"median_umi_gen": 2588.0,
|
| 93 |
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"median_umi_obs": 1958.0,
|
| 94 |
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"seconds": 7.0
|
| 95 |
+
}
|
| 96 |
+
},
|
| 97 |
+
"per_arm": {
|
| 98 |
+
"lora": {
|
| 99 |
+
"arm": "lora",
|
| 100 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold2/n5/lora.npz",
|
| 101 |
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"npz_sha256": "9db828f963f7e4f04ede0c3e8d23ecffb5ad522fed0bdb8da3e67b621a265e04",
|
| 102 |
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"receipt_verified": true,
|
| 103 |
+
"generation": {
|
| 104 |
+
"checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold2/n5/lora/checkpoint_ft.pt",
|
| 105 |
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"checkpoint_sha256": "f4bcc2b5d2e63c4303a82f0888983f6760bfee883798284adf6773285c97589a",
|
| 106 |
+
"input_condition_path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold2/n5/test_raw.npz",
|
| 107 |
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"input_condition_sha256": "35792517469285bed0fd17595441952e8f1880f63022e10db66e74dc36cd585f",
|
| 108 |
+
"seed": 20260928,
|
| 109 |
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"steps": 50,
|
| 110 |
+
"support_readout": "bernoulli",
|
| 111 |
+
"weights": "ema"
|
| 112 |
+
},
|
| 113 |
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"condition_for_broadcast": null,
|
| 114 |
+
"poisson": {
|
| 115 |
+
"seed": 20260916,
|
| 116 |
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"rule": "whole NPZ, rows in NPZ order",
|
| 117 |
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"nnz_whole_npz": 9128136,
|
| 118 |
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"median_library_whole_npz_panel": 2590.0,
|
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