Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/figures/source_data/fig3_learning_curve/panel_3e.csv

@@ -0,0 +1,9 @@
+panel,dataset,series,kind,draw,value,n,source
+3e,immicro,zs_raw,pooled,n=0,0.493942,,scores/immicro/pooled/per_donor.csv
+3e,immicro,zs_len,pooled,n=0,0.489769,,scores/immicro/zeroshot_tpm_20261002/pooled/per_donor.csv
+3e,immicro,lora,pooled,n=5,0.199274,,scores/immicro/pooled/per_donor.csv
+3e,immicro,lora,pooled,n=10,0.397169,,scores/immicro/pooled/per_donor.csv
+3e,immicro,lora,pooled,n=20,0.564359,,scores/immicro/pooled/per_donor.csv
+3e,immicro,lora,pooled,n=40,0.699336,,scores/immicro/pooled/per_donor.csv
+3e,immicro,lora,pooled,n=all,0.701926,,scores/immicro/pooled/per_donor.csv
+3e,immicro,ref_pseudo,reference,,0.603544,,scores/immicro/pooled/per_donor.csv

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/figures/source_data/fig3_learning_curve/panel_3f.csv

@@ -0,0 +1,10 @@
+panel,dataset,series,kind,draw,value,n,source
+3f,ye2026_sepsis,zs_raw,pooled,n=0,-0.0118027,,scores/ye2026_sepsis/pooled/summary.json
+3f,ye2026_sepsis,zs_len,pooled,n=0,0.107126,,scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json
+3f,ye2026_sepsis,lora,pooled,n=5,0.294045,,scores/ye2026_sepsis/pooled/summary.json
+3f,ye2026_sepsis,lora,pooled,n=10,0.422296,,scores/ye2026_sepsis/pooled/summary.json
+3f,ye2026_sepsis,lora,pooled,n=20,0.367193,,scores/ye2026_sepsis/pooled/summary.json
+3f,ye2026_sepsis,lora,pooled,n=40,0.475881,,scores/ye2026_sepsis/pooled/summary.json
+3f,ye2026_sepsis,lora,pooled,n=all,0.526761,,scores/ye2026_sepsis/pooled/summary.json
+3f,ye2026_sepsis,ref_pseudo,reference,,0.467593,,scores/ye2026_sepsis/pooled/summary.json
+3f,ye2026_sepsis,ref_broadcast,reference,,0.315946,,scores/ye2026_sepsis/pooled/summary.json

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/figures/source_data/fig3_learning_curve/panel_3h.csv

@@ -0,0 +1,10 @@
+panel,dataset,series,kind,draw,value,n,source
+3h,ye2026_sepsis,zs_raw,pooled,n=0,9,,scores/ye2026_sepsis/pooled_deg/summary.json
+3h,ye2026_sepsis,zs_len,pooled,n=0,11,,scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json
+3h,ye2026_sepsis,lora,pooled,n=5,5,,scores/ye2026_sepsis/pooled_deg/summary.json
+3h,ye2026_sepsis,lora,pooled,n=10,8,,scores/ye2026_sepsis/pooled_deg/summary.json
+3h,ye2026_sepsis,lora,pooled,n=20,18,,scores/ye2026_sepsis/pooled_deg/summary.json
+3h,ye2026_sepsis,lora,pooled,n=40,22,,scores/ye2026_sepsis/pooled_deg/summary.json
+3h,ye2026_sepsis,lora,pooled,n=all,23,,scores/ye2026_sepsis/pooled_deg/summary.json
+3h,ye2026_sepsis,ref_pseudo,reference,,22,,scores/ye2026_sepsis/pooled_deg/summary.json
+3h,ye2026_sepsis,ref_broadcast,reference,,21,,scores/ye2026_sepsis/pooled_deg/summary.json

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/queues/zeroshot_tpm_20261002.txt

@@ -0,0 +1,3 @@
+# 2026-10-02: zero-pair, exon-length-corrected bulk -> base model (learning curve x = 0)
+sample|imm_zs_tpm_all|base|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/zeroshot_tpm_20261002/all_usable_tpm.npz|20260927|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/zeroshot_tpm_20261002/zs__tpm_all.npz
+sample|ye2_zs_tpm_all|base|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/zeroshot_tpm_20261002/all_usable_tpm.npz|20260927|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/zeroshot_tpm_20261002/zs__tpm_all.npz