Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/logs/readout-dress_zs_s13.log

@@ -0,0 +1,22 @@
+{
+  "rule": "counts ~ Poisson(generated_counts * library_scale), independent per entry, single draw",
+  "seed": 20260916,
+  "library_scale": 1.0,
+  "library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
+  "unlabeled_category": "Unknown",
+  "n_cells": 35000,
+  "n_genes": 6000,
+  "input_row_sum_median": 2382.6064453125,
+  "output_row_sum_median": 2384.5,
+  "input_nonzero_fraction": 0.05939442857142857,
+  "output_nonzero_fraction": 0.043445028571428575,
+  "method_name": "generated_c1qx_dress_zs_s13",
+  "batch_prefix": "",
+  "input_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/dress_zs_s13.npz",
+  "input_matrix_key": "generated_counts",
+  "input_n_cells": 35000,
+  "subset_rows": 35000,
+  "subset_seed": null,
+  "input_npz_sha256": "63be26a1ec9a7d9f99b7f2edf88b1bf3d4da6d1065915fe2ba71dd750dc49f0b",
+  "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/dress_zs_s13_poisson.h5ad"
+}

paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/logs/readout-kawasaki_zs_s13.log

@@ -0,0 +1,22 @@
+{
+  "rule": "counts ~ Poisson(generated_counts * library_scale), independent per entry, single draw",
+  "seed": 20260916,
+  "library_scale": 1.0,
+  "library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
+  "unlabeled_category": "Unknown",
+  "n_cells": 75000,
+  "n_genes": 6000,
+  "input_row_sum_median": 2126.054443359375,
+  "output_row_sum_median": 2125.0,
+  "input_nonzero_fraction": 0.05047900888888889,
+  "output_nonzero_fraction": 0.03843248666666667,
+  "method_name": "generated_c1qx_kawasaki_zs_s13",
+  "batch_prefix": "",
+  "input_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/kawasaki_zs_s13.npz",
+  "input_matrix_key": "generated_counts",
+  "input_n_cells": 75000,
+  "subset_rows": 75000,
+  "subset_seed": null,
+  "input_npz_sha256": "a91e15d5b3d347327744a488d77312405907a1cc1c25ffc7f9a559dc125bb78d",
+  "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/kawasaki_zs_s13_poisson.h5ad"
+}

paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/logs/readout-sle_zs_s13.log

@@ -0,0 +1,22 @@
+{
+  "rule": "counts ~ Poisson(generated_counts * library_scale), independent per entry, single draw",
+  "seed": 20260916,
+  "library_scale": 1.0,
+  "library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
+  "unlabeled_category": "Unknown",
+  "n_cells": 168000,
+  "n_genes": 6000,
+  "input_row_sum_median": 2497.1824951171875,
+  "output_row_sum_median": 2496.0,
+  "input_nonzero_fraction": 0.045026646825396824,
+  "output_nonzero_fraction": 0.03531325892857143,
+  "method_name": "generated_c1qx_sle_zs_s13",
+  "batch_prefix": "",
+  "input_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/sle_zs_s13.npz",
+  "input_matrix_key": "generated_counts",
+  "input_n_cells": 168000,
+  "subset_rows": 168000,
+  "subset_seed": null,
+  "input_npz_sha256": "06261f5965c80ea802f73d3bc312636b056ecaf8f2d8d603c6d8f57aae7fdc3d",
+  "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/sle_zs_s13_poisson.h5ad"
+}

paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/logs/run_gpu_20261004T225723.log

@@ -0,0 +1,17 @@
+2026-10-04T22:57:24 runner start; arms /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/queues/arms.txt
+2026-10-04T22:57:28 --- sample dress_zs_s13 seed=20260913 (ok: 60C)
+2026-10-04T22:59:01 dress_zs_s13 sampled: 35000 cells 63be26a1ec9a
+2026-10-04T22:59:05 dress_zs_s13 read-out done
+2026-10-04T22:59:09 dress_zs_s13 labels done
+2026-10-04T22:59:13 dress_zs_s13 NPZ moved to spark-0110 (sha checked)
+2026-10-04T22:59:17 --- sample kawasaki_zs_s13 seed=20260913 (ok: 62C)
+2026-10-04T23:02:23 kawasaki_zs_s13 sampled: 75000 cells a91e15d5b3d3
+2026-10-04T23:02:31 kawasaki_zs_s13 read-out done
+2026-10-04T23:02:34 kawasaki_zs_s13 labels done
+2026-10-04T23:02:41 kawasaki_zs_s13 NPZ moved to spark-0110 (sha checked)
+2026-10-04T23:02:45 --- sample sle_zs_s13 seed=20260913 (ok: 56C)
+2026-10-04T23:09:53 sle_zs_s13 sampled: 168000 cells 06261f5965c8
+2026-10-04T23:10:10 sle_zs_s13 read-out done
+2026-10-04T23:10:15 sle_zs_s13 labels done
+2026-10-04T23:10:27 sle_zs_s13 NPZ moved to spark-0110 (sha checked)
+2026-10-04T23:10:27 runner finished