Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot/ye2026_sepsis/draw2/scores/ye2026_sepsis/disease/draw2/contrast/ye2026_sepsis/strict/manifest.json +562 -0
- paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot/ye2026_sepsis/draw2/scores/ye2026_sepsis/disease/draw2/extras/ye2026_sepsis/strict/manifest.json +153 -0
- paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot/ye2026_sepsis/draw2/scores/ye2026_sepsis/disease/draw2/score/summary.json +1887 -0
- paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot/ye2026_sepsis/draw2/scores/ye2026_sepsis/disease/draw2/statistics/donor_bootstrap_2000.csv +113 -0
paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot/ye2026_sepsis/draw2/scores/ye2026_sepsis/disease/draw2/contrast/ye2026_sepsis/strict/manifest.json
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| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-12T16:43:43.234189+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw2/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2",
|
| 13 |
+
"--action",
|
| 14 |
+
"all",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
+
"Abd-PS04",
|
| 31 |
+
"Abd-PS05",
|
| 32 |
+
"Abd-PS07",
|
| 33 |
+
"Abd-PS19",
|
| 34 |
+
"Abd-PS20",
|
| 35 |
+
"Abd-PS23",
|
| 36 |
+
"Abd-PS27",
|
| 37 |
+
"Abd-S102",
|
| 38 |
+
"Abd-S103",
|
| 39 |
+
"Abd-S120",
|
| 40 |
+
"Abd-S123",
|
| 41 |
+
"Abd-S156",
|
| 42 |
+
"Abd-S39",
|
| 43 |
+
"Abd-S42",
|
| 44 |
+
"Abd-S47",
|
| 45 |
+
"Abd-S51",
|
| 46 |
+
"Abd-S54",
|
| 47 |
+
"Abd-S57",
|
| 48 |
+
"Abd-S66",
|
| 49 |
+
"Abd-S79",
|
| 50 |
+
"Abd-S83",
|
| 51 |
+
"Abd-S98",
|
| 52 |
+
"HC01",
|
| 53 |
+
"HC05",
|
| 54 |
+
"HC07",
|
| 55 |
+
"HC09",
|
| 56 |
+
"HC12",
|
| 57 |
+
"HC13",
|
| 58 |
+
"HC16",
|
| 59 |
+
"IC10",
|
| 60 |
+
"IC15",
|
| 61 |
+
"IC16",
|
| 62 |
+
"IC19",
|
| 63 |
+
"IC22",
|
| 64 |
+
"IC23",
|
| 65 |
+
"PHC01",
|
| 66 |
+
"PHC02",
|
| 67 |
+
"PHC03",
|
| 68 |
+
"PHC05",
|
| 69 |
+
"PIC02",
|
| 70 |
+
"PIC04",
|
| 71 |
+
"PIC05",
|
| 72 |
+
"Res-PS02",
|
| 73 |
+
"Res-PS03",
|
| 74 |
+
"Res-PS12",
|
| 75 |
+
"Res-PS16",
|
| 76 |
+
"Res-PS21",
|
| 77 |
+
"Res-PS22",
|
| 78 |
+
"Res-PS25",
|
| 79 |
+
"Res-PS26",
|
| 80 |
+
"Res-S10",
|
| 81 |
+
"Res-S125",
|
| 82 |
+
"Res-S127",
|
| 83 |
+
"Res-S139",
|
| 84 |
+
"Res-S146",
|
| 85 |
+
"Res-S149",
|
| 86 |
+
"Res-S150",
|
| 87 |
+
"Res-S164",
|
| 88 |
+
"Res-S166",
|
| 89 |
+
"Res-S174",
|
| 90 |
+
"Res-S184",
|
| 91 |
+
"Res-S19",
|
| 92 |
+
"Res-S26",
|
| 93 |
+
"Res-S40",
|
| 94 |
+
"Res-S87",
|
| 95 |
+
"Skin-S140",
|
| 96 |
+
"Skin-S142",
|
| 97 |
+
"Skin-S152",
|
| 98 |
+
"Skin-S38",
|
| 99 |
+
"Skin-S43",
|
| 100 |
+
"Skin-S46",
|
| 101 |
+
"Skin-S52",
|
| 102 |
+
"Uri-S134",
|
| 103 |
+
"Uri-S147",
|
| 104 |
+
"Uri-S157",
|
| 105 |
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"seconds": 87.6
|
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}
|
paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot/ye2026_sepsis/draw2/scores/ye2026_sepsis/disease/draw2/extras/ye2026_sepsis/strict/manifest.json
ADDED
|
@@ -0,0 +1,153 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_extra_metrics.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-12T16:42:15.656251+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw2/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2",
|
| 13 |
+
"--action",
|
| 14 |
+
"all",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
+
"Abd-PS04",
|
| 31 |
+
"Abd-PS05",
|
| 32 |
+
"Abd-PS07",
|
| 33 |
+
"Abd-PS19",
|
| 34 |
+
"Abd-PS20",
|
| 35 |
+
"Abd-PS23",
|
| 36 |
+
"Abd-PS27",
|
| 37 |
+
"Abd-S102",
|
| 38 |
+
"Abd-S103",
|
| 39 |
+
"Abd-S120",
|
| 40 |
+
"Abd-S123",
|
| 41 |
+
"Abd-S156",
|
| 42 |
+
"Abd-S39",
|
| 43 |
+
"Abd-S42",
|
| 44 |
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"Abd-S47",
|
| 45 |
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"Abd-S51",
|
| 46 |
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"Abd-S54",
|
| 47 |
+
"Abd-S57",
|
| 48 |
+
"Abd-S66",
|
| 49 |
+
"Abd-S79",
|
| 50 |
+
"Abd-S83",
|
| 51 |
+
"Abd-S98",
|
| 52 |
+
"HC01",
|
| 53 |
+
"HC05",
|
| 54 |
+
"HC07",
|
| 55 |
+
"HC09",
|
| 56 |
+
"HC12",
|
| 57 |
+
"HC13",
|
| 58 |
+
"HC16",
|
| 59 |
+
"IC10",
|
| 60 |
+
"IC15",
|
| 61 |
+
"IC16",
|
| 62 |
+
"IC19",
|
| 63 |
+
"IC22",
|
| 64 |
+
"IC23",
|
| 65 |
+
"PHC01",
|
| 66 |
+
"PHC02",
|
| 67 |
+
"PHC03",
|
| 68 |
+
"PHC05",
|
| 69 |
+
"PIC02",
|
| 70 |
+
"PIC04",
|
| 71 |
+
"PIC05",
|
| 72 |
+
"Res-PS02",
|
| 73 |
+
"Res-PS03",
|
| 74 |
+
"Res-PS12",
|
| 75 |
+
"Res-PS16",
|
| 76 |
+
"Res-PS21",
|
| 77 |
+
"Res-PS22",
|
| 78 |
+
"Res-PS25",
|
| 79 |
+
"Res-PS26",
|
| 80 |
+
"Res-S10",
|
| 81 |
+
"Res-S125",
|
| 82 |
+
"Res-S127",
|
| 83 |
+
"Res-S139",
|
| 84 |
+
"Res-S146",
|
| 85 |
+
"Res-S149",
|
| 86 |
+
"Res-S150",
|
| 87 |
+
"Res-S164",
|
| 88 |
+
"Res-S166",
|
| 89 |
+
"Res-S174",
|
| 90 |
+
"Res-S184",
|
| 91 |
+
"Res-S19",
|
| 92 |
+
"Res-S26",
|
| 93 |
+
"Res-S40",
|
| 94 |
+
"Res-S87",
|
| 95 |
+
"Skin-S140",
|
| 96 |
+
"Skin-S142",
|
| 97 |
+
"Skin-S152",
|
| 98 |
+
"Skin-S38",
|
| 99 |
+
"Skin-S43",
|
| 100 |
+
"Skin-S46",
|
| 101 |
+
"Skin-S52",
|
| 102 |
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"Uri-S134",
|
| 103 |
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"Uri-S147",
|
| 104 |
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"Uri-S157",
|
| 105 |
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"Uri-S20",
|
| 106 |
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"Uri-S93"
|
| 107 |
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],
|
| 108 |
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"n_samples": 77,
|
| 109 |
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"calls": {
|
| 110 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/score": {
|
| 111 |
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"arms": [
|
| 112 |
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"lora",
|
| 113 |
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"pairedcal",
|
| 114 |
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"scsemi",
|
| 115 |
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"raw",
|
| 116 |
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"refcal"
|
| 117 |
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],
|
| 118 |
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"summary_sha256": "b5d9d1d3a0f5af919c9da94588e0d238c217fb6b6aff3250c21af8c9e25eb3ce"
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| 119 |
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}
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| 120 |
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},
|
| 121 |
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"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
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| 122 |
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"bandwidth_m": 27.91515930403532,
|
| 123 |
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"params": {
|
| 124 |
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"seed": 20261001,
|
| 125 |
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"ks": [
|
| 126 |
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3,
|
| 127 |
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5,
|
| 128 |
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10
|
| 129 |
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],
|
| 130 |
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"knn_c2st_k": 5,
|
| 131 |
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"rf_trees": 300,
|
| 132 |
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"cv_folds": 5,
|
| 133 |
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"bw_multiples": [
|
| 134 |
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0.5,
|
| 135 |
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|
| 136 |
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2.0
|
| 137 |
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],
|
| 138 |
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"bw_max_cells": 4000,
|
| 139 |
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"en_pcs": 100,
|
| 140 |
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"en_lb_max_queries_all_cells": 20000,
|
| 141 |
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"en_all_cells": true
|
| 142 |
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},
|
| 143 |
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"n_representative_rows": null,
|
| 144 |
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"fetched_from_server2": [],
|
| 145 |
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"code_sha256": {
|
| 146 |
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|
| 147 |
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|
| 148 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 149 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da"
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| 150 |
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},
|
| 151 |
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"seconds": 1385.8,
|
| 152 |
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"max_abs_diff_k10_pooled": 0.0
|
| 153 |
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}
|
paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot/ye2026_sepsis/draw2/scores/ye2026_sepsis/disease/draw2/score/summary.json
ADDED
|
@@ -0,0 +1,1887 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"written_utc": "2026-10-12T16:19:09.807546+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"ye2026_sepsis",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/score",
|
| 11 |
+
"--donors",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/test_sample_ids.txt",
|
| 13 |
+
"--threads",
|
| 14 |
+
"4",
|
| 15 |
+
"--arm",
|
| 16 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/lora.npz",
|
| 17 |
+
"--arm",
|
| 18 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/pairedcal.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/scsemi.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz",
|
| 25 |
+
"--case-groups",
|
| 26 |
+
"adult_sepsis,ped_sepsis",
|
| 27 |
+
"--control-groups",
|
| 28 |
+
"adult_HC,adult_ICU_ctrl,ped_HC,ped_ICU_ctrl"
|
| 29 |
+
],
|
| 30 |
+
"arms": [
|
| 31 |
+
"lora",
|
| 32 |
+
"pairedcal",
|
| 33 |
+
"scsemi",
|
| 34 |
+
"raw",
|
| 35 |
+
"refcal"
|
| 36 |
+
],
|
| 37 |
+
"donors": [
|
| 38 |
+
"Abd-PS04",
|
| 39 |
+
"Abd-PS05",
|
| 40 |
+
"Abd-PS07",
|
| 41 |
+
"Abd-PS19",
|
| 42 |
+
"Abd-PS20",
|
| 43 |
+
"Abd-PS23",
|
| 44 |
+
"Abd-PS27",
|
| 45 |
+
"Abd-S102",
|
| 46 |
+
"Abd-S103",
|
| 47 |
+
"Abd-S120",
|
| 48 |
+
"Abd-S123",
|
| 49 |
+
"Abd-S156",
|
| 50 |
+
"Abd-S39",
|
| 51 |
+
"Abd-S42",
|
| 52 |
+
"Abd-S47",
|
| 53 |
+
"Abd-S51",
|
| 54 |
+
"Abd-S54",
|
| 55 |
+
"Abd-S57",
|
| 56 |
+
"Abd-S66",
|
| 57 |
+
"Abd-S79",
|
| 58 |
+
"Abd-S83",
|
| 59 |
+
"Abd-S98",
|
| 60 |
+
"HC01",
|
| 61 |
+
"HC05",
|
| 62 |
+
"HC07",
|
| 63 |
+
"HC09",
|
| 64 |
+
"HC12",
|
| 65 |
+
"HC13",
|
| 66 |
+
"HC16",
|
| 67 |
+
"IC10",
|
| 68 |
+
"IC15",
|
| 69 |
+
"IC16",
|
| 70 |
+
"IC19",
|
| 71 |
+
"IC22",
|
| 72 |
+
"IC23",
|
| 73 |
+
"PHC01",
|
| 74 |
+
"PHC02",
|
| 75 |
+
"PHC03",
|
| 76 |
+
"PHC05",
|
| 77 |
+
"PIC02",
|
| 78 |
+
"PIC04",
|
| 79 |
+
"PIC05",
|
| 80 |
+
"Res-PS02",
|
| 81 |
+
"Res-PS03",
|
| 82 |
+
"Res-PS12",
|
| 83 |
+
"Res-PS16",
|
| 84 |
+
"Res-PS21",
|
| 85 |
+
"Res-PS22",
|
| 86 |
+
"Res-PS25",
|
| 87 |
+
"Res-PS26",
|
| 88 |
+
"Res-S10",
|
| 89 |
+
"Res-S125",
|
| 90 |
+
"Res-S127",
|
| 91 |
+
"Res-S139",
|
| 92 |
+
"Res-S146",
|
| 93 |
+
"Res-S149",
|
| 94 |
+
"Res-S150",
|
| 95 |
+
"Res-S164",
|
| 96 |
+
"Res-S166",
|
| 97 |
+
"Res-S174",
|
| 98 |
+
"Res-S184",
|
| 99 |
+
"Res-S19",
|
| 100 |
+
"Res-S26",
|
| 101 |
+
"Res-S40",
|
| 102 |
+
"Res-S87",
|
| 103 |
+
"Skin-S140",
|
| 104 |
+
"Skin-S142",
|
| 105 |
+
"Skin-S152",
|
| 106 |
+
"Skin-S38",
|
| 107 |
+
"Skin-S43",
|
| 108 |
+
"Skin-S46",
|
| 109 |
+
"Skin-S52",
|
| 110 |
+
"Uri-S134",
|
| 111 |
+
"Uri-S147",
|
| 112 |
+
"Uri-S157",
|
| 113 |
+
"Uri-S20",
|
| 114 |
+
"Uri-S93"
|
| 115 |
+
],
|
| 116 |
+
"n_donors": 77,
|
| 117 |
+
"reference": {
|
| 118 |
+
"cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis",
|
| 119 |
+
"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
|
| 120 |
+
"features_sha256": "0cfda4b0cf1caf5e5319d071697c228d894e992fd090e2b3ed450bd6c9887d46",
|
| 121 |
+
"n_r1_cells": 11550,
|
| 122 |
+
"pca": {
|
| 123 |
+
"n_components": 50,
|
| 124 |
+
"explained_variance_ratio_sum": 0.3365280330181122,
|
| 125 |
+
"n_fit_cells": 11550
|
| 126 |
+
},
|
| 127 |
+
"r2_control": {
|
| 128 |
+
"precision": 0.9816450216450217,
|
| 129 |
+
"coverage": 0.9999134199134199,
|
| 130 |
+
"density": 1.3056103896103894,
|
| 131 |
+
"n_query": 11550,
|
| 132 |
+
"depth_matched": {
|
| 133 |
+
"precision": 0.9798268398268398,
|
| 134 |
+
"coverage": 0.9995670995670995,
|
| 135 |
+
"density": 1.3005194805194804
|
| 136 |
+
}
|
| 137 |
+
},
|
| 138 |
+
"observed_l1_loo_null_mean": 0.5196680228845961
|
| 139 |
+
},
|
| 140 |
+
"contrast_definition": {
|
| 141 |
+
"enabled": true,
|
| 142 |
+
"rule": "explicit --case-groups / --control-groups",
|
| 143 |
+
"group_source": "features groups",
|
| 144 |
+
"case_groups": [
|
| 145 |
+
"adult_sepsis",
|
| 146 |
+
"ped_sepsis"
|
| 147 |
+
],
|
| 148 |
+
"control_groups": [
|
| 149 |
+
"adult_HC",
|
| 150 |
+
"adult_ICU_ctrl",
|
| 151 |
+
"ped_HC",
|
| 152 |
+
"ped_ICU_ctrl"
|
| 153 |
+
],
|
| 154 |
+
"n_case_donors": 57,
|
| 155 |
+
"n_control_donors": 20,
|
| 156 |
+
"n_donors_in_neither": 0,
|
| 157 |
+
"case": [
|
| 158 |
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true,
|
| 159 |
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|
| 160 |
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|
| 161 |
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|
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|
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|
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|
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|
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|
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paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot/ye2026_sepsis/draw2/scores/ye2026_sepsis/disease/draw2/statistics/donor_bootstrap_2000.csv
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| 1 |
+
arm,baseline,estimate,ci_low,ci_high,n_donors,n_paired_samples,n_excluded_nonfinite_pairs,n_boot,seed,bootstrap_unit,metric,status
|
| 2 |
+
pairedcal,lora,-0.0918846205164954,-0.16764303313639597,-0.017050792564114348,77,77,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
|
| 3 |
+
raw,lora,0.015367097074348033,-0.07620778007461261,0.10898403525207913,77,77,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
|
| 4 |
+
refcal,lora,-0.0805936732556454,-0.1634635401469077,0.0024046806929755534,77,77,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
|
| 5 |
+
scsemi,lora,0.0809710805582856,0.027401583707620785,0.13916245660113793,77,77,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
|
| 6 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
|
| 7 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
|
| 8 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
|
| 9 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
|
| 10 |
+
pairedcal,lora,-0.31056277056277054,-0.3467554112554113,-0.2741969696969697,77,77,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
|
| 11 |
+
raw,lora,-0.677056277056277,-0.712121212121212,-0.6382619047619048,77,77,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
|
| 12 |
+
refcal,lora,-0.5566233766233766,-0.5966233766233765,-0.5135865800865801,77,77,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
|
| 13 |
+
scsemi,lora,-0.6660606060606061,-0.7031168831168831,-0.6212034632034632,77,77,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
|
| 14 |
+
pairedcal,lora,-0.17316017316017313,-0.20831818181818185,-0.1387770562770563,77,77,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
|
| 15 |
+
raw,lora,-0.7691774891774893,-0.7981839826839827,-0.7350627705627707,77,77,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
|
| 16 |
+
refcal,lora,-0.4612987012987013,-0.5138549783549784,-0.4081255411255413,77,77,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
|
| 17 |
+
scsemi,lora,-0.6819047619047619,-0.7160238095238095,-0.6431168831168832,77,77,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
|
| 18 |
+
pairedcal,lora,-0.012874458874458877,-0.031300432900432905,0.0057800865800865485,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
|
| 19 |
+
raw,lora,-0.020952380952380955,-0.03495281385281384,-0.006259090909090908,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
|
| 20 |
+
refcal,lora,-0.062060606060606066,-0.07750692640692643,-0.04430822510822512,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
|
| 21 |
+
scsemi,lora,-0.025419913419913422,-0.05097943722943722,-0.00038831168831169347,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
|
| 22 |
+
pairedcal,lora,0.008207792207792209,0.006909090909090911,0.00950649350649351,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
|
| 23 |
+
raw,lora,0.0067619047619047554,0.0057660173160173,0.007801082251082249,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
|
| 24 |
+
refcal,lora,0.009705627705627709,0.008510822510822516,0.010839826839826839,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
|
| 25 |
+
scsemi,lora,0.010935064935064938,0.00756709956709957,0.014640909090909085,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
|
| 26 |
+
pairedcal,lora,0.1336969696969697,0.09771255411255411,0.1696714285714286,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
|
| 27 |
+
raw,lora,0.26045021645021643,0.21888571428571435,0.30128246753246746,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
|
| 28 |
+
refcal,lora,0.17013852813852812,0.1289255411255411,0.21149025974025973,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
|
| 29 |
+
scsemi,lora,0.03557575757575758,0.011748268398268409,0.05946493506493505,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
|
| 30 |
+
pairedcal,lora,0.0243982683982684,0.016726190476190485,0.03219047619047619,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_NK cell,ok
|
| 31 |
+
raw,lora,0.05577489177489178,0.046458874458874484,0.06583593073593075,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_NK cell,ok
|
| 32 |
+
refcal,lora,0.019792207792207795,0.011904761904761911,0.0285887445887446,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_NK cell,ok
|
| 33 |
+
scsemi,lora,-0.0004935064935064848,-0.009117316017316012,0.007741991341991339,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_NK cell,ok
|
| 34 |
+
pairedcal,lora,-0.0008658008658008566,-0.011697619047619037,0.010606493506493512,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
|
| 35 |
+
raw,lora,-0.008320346320346313,-0.01879004329004328,0.002528354978354981,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
|
| 36 |
+
refcal,lora,0.005619047619047632,-0.007689826839826829,0.01968896103896105,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
|
| 37 |
+
scsemi,lora,0.01354978354978356,0.0005703463203463251,0.027577705627705625,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
|
| 38 |
+
pairedcal,lora,-0.1525627705627706,-0.18749004329004332,-0.11692142857142858,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_T cell,ok
|
| 39 |
+
raw,lora,-0.2937142857142857,-0.3283647186147186,-0.2578521645021645,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_T cell,ok
|
| 40 |
+
refcal,lora,-0.14319480519480524,-0.1851694805194805,-0.09893073593073594,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_T cell,ok
|
| 41 |
+
scsemi,lora,-0.03414718614718617,-0.07393679653679655,0.008134848484848453,77,77,0,2000,20261012,donor_all_draws_and_visits,gen_T cell,ok
|
| 42 |
+
pairedcal,lora,80.47402597402598,-13.57224025974026,180.12532467532466,77,77,0,2000,20261012,donor_all_draws_and_visits,median_umi_gen,ok
|
| 43 |
+
raw,lora,-860.6103896103896,-923.3584415584415,-790.0267857142858,77,77,0,2000,20261012,donor_all_draws_and_visits,median_umi_gen,ok
|
| 44 |
+
refcal,lora,-302.27272727272725,-412.5873376623377,-179.06396103896105,77,77,0,2000,20261012,donor_all_draws_and_visits,median_umi_gen,ok
|
| 45 |
+
scsemi,lora,301.73376623376623,222.55633116883118,382.4368506493506,77,77,0,2000,20261012,donor_all_draws_and_visits,median_umi_gen,ok
|
| 46 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
|
| 47 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
|
| 48 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
|
| 49 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
|
| 50 |
+
pairedcal,lora,13.369696969696967,9.77125541125541,16.967142857142857,77,77,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
|
| 51 |
+
raw,lora,26.045021645021645,21.88857142857143,30.12824675324676,77,77,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
|
| 52 |
+
refcal,lora,17.013852813852814,12.892554112554116,21.149025974025975,77,77,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
|
| 53 |
+
scsemi,lora,3.5575757575757576,1.1748268398268402,5.946493506493505,77,77,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
|
| 54 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,mono_pct_obs,ok
|
| 55 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,mono_pct_obs,ok
|
| 56 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,mono_pct_obs,ok
|
| 57 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,mono_pct_obs,ok
|
| 58 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_generated_cells,ok
|
| 59 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_generated_cells,ok
|
| 60 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_generated_cells,ok
|
| 61 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_generated_cells,ok
|
| 62 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_observed_cells,ok
|
| 63 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_observed_cells,ok
|
| 64 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_observed_cells,ok
|
| 65 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_observed_cells,ok
|
| 66 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_reference_cells,ok
|
| 67 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_reference_cells,ok
|
| 68 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_reference_cells,ok
|
| 69 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,n_reference_cells,ok
|
| 70 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_B cell,ok
|
| 71 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_B cell,ok
|
| 72 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_B cell,ok
|
| 73 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_B cell,ok
|
| 74 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_DC,ok
|
| 75 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_DC,ok
|
| 76 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_DC,ok
|
| 77 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_DC,ok
|
| 78 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_Monocyte,ok
|
| 79 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_Monocyte,ok
|
| 80 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_Monocyte,ok
|
| 81 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_Monocyte,ok
|
| 82 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_NK cell,ok
|
| 83 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_NK cell,ok
|
| 84 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_NK cell,ok
|
| 85 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_NK cell,ok
|
| 86 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_Other,ok
|
| 87 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_Other,ok
|
| 88 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_Other,ok
|
| 89 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_Other,ok
|
| 90 |
+
pairedcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_T cell,ok
|
| 91 |
+
raw,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_T cell,ok
|
| 92 |
+
refcal,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_T cell,ok
|
| 93 |
+
scsemi,lora,0.0,0.0,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,obs_T cell,ok
|
| 94 |
+
pairedcal,lora,0.22077922077922077,-5.624675324675325,5.9480519480519485,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_own_rank,ok
|
| 95 |
+
raw,lora,5.1688311688311686,-1.3766233766233766,12.248376623376615,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_own_rank,ok
|
| 96 |
+
refcal,lora,1.844155844155844,-3.896103896103896,7.363636363636363,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_own_rank,ok
|
| 97 |
+
scsemi,lora,5.64935064935065,-0.5730519480519479,11.71493506493506,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_own_rank,ok
|
| 98 |
+
pairedcal,lora,-0.01998243300281256,-0.02604285963242348,-0.013036388515827113,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_r,ok
|
| 99 |
+
raw,lora,-0.007733841239414463,-0.013966469223662903,-0.0011654482026956996,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_r,ok
|
| 100 |
+
refcal,lora,-0.03424175950450916,-0.04049873779060859,-0.027327988889893337,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_r,ok
|
| 101 |
+
scsemi,lora,-0.27606068758176827,-0.29488890216921804,-0.2578661575949298,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_r,ok
|
| 102 |
+
pairedcal,lora,0.07792207792207792,-0.012987012987012988,0.1691558441558424,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_top1,ok
|
| 103 |
+
raw,lora,0.0,-0.07792207792207792,0.07792207792207792,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_top1,ok
|
| 104 |
+
refcal,lora,0.05194805194805195,-0.03896103896103896,0.14285714285714285,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_top1,ok
|
| 105 |
+
scsemi,lora,-0.07792207792207792,-0.15584415584415584,0.0,77,77,0,2000,20261012,donor_all_draws_and_visits,pb_top1,ok
|
| 106 |
+
pairedcal,lora,-0.005541125541125561,-0.01584415584415587,0.005196969696969678,77,77,0,2000,20261012,donor_all_draws_and_visits,precision,ok
|
| 107 |
+
raw,lora,-0.2634632034632035,-0.2936796536796537,-0.23064069264069276,77,77,0,2000,20261012,donor_all_draws_and_visits,precision,ok
|
| 108 |
+
refcal,lora,-0.08493506493506495,-0.10329004329004329,-0.06597186147186149,77,77,0,2000,20261012,donor_all_draws_and_visits,precision,ok
|
| 109 |
+
scsemi,lora,-0.1270995670995671,-0.1575800865800866,-0.0955822510822511,77,77,0,2000,20261012,donor_all_draws_and_visits,precision,ok
|
| 110 |
+
pairedcal,lora,-0.02935064935064936,-0.040002164502164525,-0.019134199134199146,77,77,0,2000,20261012,donor_all_draws_and_visits,precision_depth_matched,ok
|
| 111 |
+
raw,lora,-0.3193939393939394,-0.34476190476190477,-0.2924675324675325,77,77,0,2000,20261012,donor_all_draws_and_visits,precision_depth_matched,ok
|
| 112 |
+
refcal,lora,-0.12510822510822509,-0.14138528138528136,-0.11004329004329004,77,77,0,2000,20261012,donor_all_draws_and_visits,precision_depth_matched,ok
|
| 113 |
+
scsemi,lora,-0.3350649350649351,-0.3837294372294373,-0.28224675324675325,77,77,0,2000,20261012,donor_all_draws_and_visits,precision_depth_matched,ok
|