Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_zs/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_zs,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.19549150030335266,0.12768254504605203,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.17197452266396393,0.08598726133198197,0.1449290518276461,0.07911001757420236,0.4474908935471042,-0.07815834182407799,0.4691413424307833
+obs_thin_zs,BD,ifng_response_log2fc_high_vs_other,-0.6412413305746505,-0.5684326559871167,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.18459897054353067,0.09229948527176533,0.12251366449009005,-0.9147861402663239,-0.5133138700580446,-0.9349794864573681,-0.3475031746919329
+obs_thin_zs,BD,ifng_response_c1q_high_minus_other,0.0933647961778376,0.09221656203854427,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.016257003270296586,0.008128501635148293,0.018206835764862872,0.0755392621107745,0.11348679852348745,0.06749627618156734,0.11923331617410787
+obs_thin_zs,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.06103546887716758,-0.08691196175939116,0.25,-0.5,0.375,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.13236840654550378,0.06618420327275189,0.18047636519958035,-0.17480519063346975,0.10448723864358177,-0.2716631420506827,0.14959220429634756
+obs_thin_zs,BD,proinflammatory_log2fc_high_vs_other,-0.7667773949237555,-0.7293387483122228,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.09242962517842243,0.046214812589211215,0.07125178830749956,-0.9032174450005427,-0.7052146380700337,-0.9138535544976697,-0.6197012353498413
+obs_thin_zs,BD,proinflammatory_c1q_high_minus_other,0.02459966478634512,0.01896030445717603,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.014165263235082857,0.007082631617541428,0.009768160153980465,0.014895492953082956,0.04558255727794547,0.0020595699634148312,0.04713975960927541
+obs_thin_zs,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.17491916718708855,0.1677207961030233,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.07306701912481284,0.03653350956240642,0.06423774347633332,0.09424625877995489,0.2699888177623528,0.058653234661161235,0.29118509971301587
+obs_thin_zs,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.5467431829905592,-0.5448279752177171,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.18782387554684013,0.09391193777342006,0.17052844875944834,-0.7755065408238698,-0.321810240702933,-0.8456128823796134,-0.24787348360150507
+obs_thin_zs,BD,phagocytosis_antigen_c1q_high_minus_other,0.11639425767545909,0.1182693971233019,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.023514843206213575,0.011757421603106787,0.016686907554998645,0.08588534380360058,0.143152892651632,0.07897689473498905,0.15381162061592912
+obs_thin_zs,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.9330363994198372,0.860432244076174,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.26718450882196193,0.13359225441098097,0.32010243569143504,0.7180196442446383,1.293261465282362,0.5078862229550897,1.3581865758845848
+obs_thin_zs,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.5018254222674314,0.5466922298638119,1.0,1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.26896672553235523,0.13448336276617762,0.33823974529382417,0.15941172177143645,0.754505507570665,0.07383934131008091,0.929811503224782
+obs_thin_zs,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6502454177671465,0.6340765526445828,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.11529554819420648,0.05764777409710324,0.07187545149678232,0.5270781239080291,0.8057504418713912,0.46678447208399043,0.8337063634503026
+obs_thin_zs,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.36226684948499754,0.25708060131835453,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.37326244469677644,0.18663122234838822,0.3628859204259535,0.04736180170237922,0.887544393600902,-0.23167699452821267,0.9562106934982078
+obs_thin_zs,HC,ifng_response_log2fc_high_vs_other,-0.9482975270968869,-0.8778683479712375,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.4458659879382611,0.22293299396913055,0.6639904144631519,-1.4689027733082005,-0.5685506391368721,-1.6577698100797815,-0.2388252441139922
+obs_thin_zs,HC,ifng_response_c1q_high_minus_other,0.1206136053243854,0.1263014976971233,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.04081601361549374,0.02040800680774687,0.04563027649556066,0.06783611431408729,0.16201531158920773,0.055666219460866626,0.1855609911879042
+obs_thin_zs,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.10061051772187934,-0.16618721254039848,0.25,-0.5,0.625,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.23829694690939182,0.11914847345469591,0.2162979588824932,-0.3064978435841939,0.23643019777747346,-0.4797941368479703,0.2785731014042116
+obs_thin_zs,HC,proinflammatory_log2fc_high_vs_other,-1.1699983155171483,-1.17233330634213,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.41330097275023653,0.20665048637511826,0.4699792544364505,-1.6503455442867832,-0.6849811050975496,-1.8276523923667245,-0.512344238667572
+obs_thin_zs,HC,proinflammatory_c1q_high_minus_other,0.040289006049081574,0.04240004397925671,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.027161776694133468,0.013580888347066734,0.030068395394816795,0.006425637906753157,0.06993029833105974,-0.0029314418935115147,0.08350945399167467
+obs_thin_zs,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.17543072662108866,0.22307560928461206,0.75,0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.12484052517249611,0.062420262586248054,0.11772686385618802,-0.0051416006972711545,0.26071328861240173,-0.023218407421355308,0.3740798606635326
+obs_thin_zs,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.902580830186344,-0.8368174968903772,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.5562770292537443,0.27813851462687217,0.4397910972107887,-1.6396848267841417,-0.29700350018048016,-1.787741718417732,-0.01741994195495622
+obs_thin_zs,HC,phagocytosis_antigen_c1q_high_minus_other,0.1503250182546247,0.15236007123626502,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.01953481888893722,0.00976740944446861,0.029094759734515446,0.12822405076594323,0.16835587978002553,0.11924076215588236,0.181409274353367
+obs_thin_zs,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.7657385588232786,0.8453254573850628,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.6154471941937928,0.3077235970968964,0.7922899544613495,0.004277164016170613,1.368026156506818,-0.21357526580635167,1.7450523834529088
+obs_thin_zs,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.12676469842460336,0.02734808003276163,0.75,0.5,0.625,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.5367794259032496,0.2683897129516248,0.32620790951198253,-0.41601748533195165,0.8683801189648418,-0.7273711519344498,0.9809005487836565
+obs_thin_zs,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6912918838186004,0.6817211706908537,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.098634920568259,0.0493174602841295,0.14178579880818132,0.5967960571673117,0.8049291367253824,0.5343417145513965,0.8482420530858044

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_zs/rule_A/sample.csv

@@ -0,0 +1,9 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+obs_thin_zs,PBMC_BD_1,BD,real,489,33,0.06748466257668712,0.3189176902515152,0.22088782710518115,0.09802986314633402,0.17475371244169347,0.15439581193600754,0.020357900505685922,0.5327456909403645,0.41289628025506875,0.11984941068529575,0.4474908935471042,0.10448723864358177,0.2699888177623528,0.7180196442446383,-0.5831963872791301,-0.7052146380700337,-0.5828975577038599,0.15941172177143645,1.9016980329805409,1.2690930616732525,0.6326049713072883,-0.8170616785645355
+obs_thin_zs,PBMC_BD_2,BD,real,946,65,0.06871035940803383,0.3108429132844617,0.22443965235370716,0.08640326093075451,0.15283181835707182,0.13793632540398887,0.014895492953082956,0.526639011077986,0.409949627516678,0.11668938356130804,0.09245998982310495,-0.17480519063346975,0.18125553192351251,0.9779602310308434,-0.5536689246951031,-0.7148380239289746,-0.321810240702933,0.6730030957598233,1.7864247767805823,1.150876642798705,0.6355481339818774,-0.566584184864819
+obs_thin_zs,PBMC_BD_3,BD,real,735,43,0.058503401360544216,0.318174467201927,0.2426352050911525,0.0755392621107745,0.1848725869167564,0.16730987850809026,0.01756270840866614,0.5001072165549967,0.4142218727513961,0.08588534380360058,0.16290510026899913,-0.16068080034626947,0.15418606028253407,0.7429042571215048,-0.5133138700580446,-0.743839472695471,-0.5067583927315743,0.4203813639678007,1.6466165148331136,1.1195383909250844,0.5270781239080291,-0.6734059481433011
+obs_thin_zs,PBMC_BD_4,BD,real,1402,37,0.026390870185449358,0.30099929313516116,0.1875124946116737,0.11348679852348745,0.17378784058026403,0.12820528330231856,0.04558255727794547,0.4868489257779525,0.3436960331263205,0.143152892651632,0.07911001757420236,-0.013143123172512835,0.09424625877995489,1.293261465282362,-0.9147861402663239,-0.9032174450005427,-0.7755065408238698,0.754505507570665,1.786455696204433,0.9807052543330417,0.8057504418713912,-0.9269013478786633
+obs_thin_zs,PBMC_HC_1,HC,real,272,19,0.06985294117647059,0.37919817349767687,0.21718286190846914,0.16201531158920773,0.2209148720773435,0.15098457374628377,0.06993029833105974,0.6032760836973674,0.4349202039173419,0.16835587978002553,0.3589741162859031,-0.3064978435841939,-0.0051416006972711545,0.004277164016170613,-0.5852667606910241,-1.0199078765827019,-0.7674036531837951,-0.41601748533195165,1.6976866620381623,1.1008906048708507,0.5967960571673117,-0.6702038529720298
+obs_thin_zs,PBMC_HC_2,HC,real,743,19,0.02557200538358008,0.2971142347903452,0.22927812047625792,0.06783611431408729,0.1750212960857823,0.16859565817902913,0.006425637906753157,0.5185996251357852,0.39037557436984194,0.12822405076594323,0.155187086350806,-0.2198978449017827,0.1889001815987655,0.5444236531592711,-1.1704699352514507,-1.3247587361015578,-0.9062313405969594,0.030753752324617738,1.7646657594395625,1.1427796080278179,0.6218861514117446,-1.064402701975191
+obs_thin_zs,PBMC_HC_3,HC,real,1306,66,0.05053598774885146,0.3291392629343631,0.2175614166884268,0.11157784624593628,0.16793935997731965,0.13500080285722305,0.032938557120096607,0.5420455054128185,0.4023933024972167,0.13965220291560176,0.04736180170237922,-0.11247658017901421,0.26071328861240173,1.1462272616108546,-0.5685506391368721,-0.6849811050975496,-0.29700350018048016,0.8683801189648418,1.8980127064155246,1.1564565164455618,0.7415561899699628,-0.6006142634843268
+obs_thin_zs,PBMC_HC_4,HC,real,473,10,0.021141649048625793,0.3179453873337933,0.17692023818548297,0.14102514914831032,0.17577548604202411,0.1239139552036073,0.05186153083841681,0.5251653305479709,0.3600973909910426,0.16506793955692828,0.887544393600902,0.23643019777747346,0.2572510369704586,1.368026156506818,-1.4689027733082005,-1.6503455442867832,-1.6396848267841417,0.023942407740905523,1.8012600175474744,0.9963308808220921,0.8049291367253824,-1.5860381840533473

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_zs/rule_B/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_zs,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.28017764632561515,0.2962759558305625,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.19047354838757846,0.09523677419378923,0.1323042601894911,0.03216736451681709,0.4959913091245186,-0.022908273834548132,0.5832635664857784
+obs_thin_zs,BD,ifng_response_log2fc_high_vs_other,-1.3106115938654048,-1.3062871296909953,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.1638348973238595,0.08191744866192975,0.173383202515498,-1.5089257331087278,-1.1209463829709008,-1.571309475697831,-1.0499137120329787
+obs_thin_zs,BD,ifng_response_c1q_high_minus_other,0.12020912073281455,0.1307556737263199,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.0331238383256484,0.0165619191628242,0.022112614405837977,0.07199906538203021,0.14732607009658816,0.06750170228467724,0.17291653918095184
+obs_thin_zs,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.132592182047946,-0.12273621676673799,0.0,-1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.14382125575051957,0.07191062787525979,0.23320691499522883,-0.2794805022343538,-0.0054157924239542875,-0.3614438940401981,0.09625952994430609
+obs_thin_zs,BD,proinflammatory_log2fc_high_vs_other,-1.422016337419414,-1.3894718710003486,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.19266440282256803,0.09633220141128401,0.27496679760777787,-1.654421481627172,-1.2547001260497865,-1.7285883958806008,-1.115444278958227
+obs_thin_zs,BD,proinflammatory_c1q_high_minus_other,0.03303168390040632,0.028728144725712723,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.017118773682351186,0.008559386841175593,0.017158597533886565,0.017894329361205552,0.056776116788994274,0.0057918948722130645,0.06027147292859957
+obs_thin_zs,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.25405666619533335,0.27319345496548264,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.07699259806040817,0.03849629903020409,0.048178106215351374,0.14461323035446924,0.32522652449589884,0.13154426157956356,0.37656907081110313
+obs_thin_zs,BD,phagocytosis_antigen_log2fc_high_vs_other,-1.04836171482635,-1.0967665743246124,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.14429232267674144,0.07214616133837072,0.14455648616368189,-1.1568023062769277,-0.843111404379248,-1.2779629994180501,-0.8187604302346498
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_zs/rule_B/sample.csv

@@ -0,0 +1,9 @@
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