Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/data/dress/BUILD.json

@@ -0,0 +1,26 @@
+{
+ "dataset": "dress",
+ "source": "/home/sj_server_1/gblee/datalake/single-cell-RNA-seq-datasets/_staged_new_blocks/300_A_GSE132802_DRESS_DiHS_skin_blood_cultured_PBMC_scRNAseq/300_A_GSE132802_DRESS_DiHS_skin_blood_cultured_PBMC_scRNAseq.raw_counts.h5ad",
+ "written_utc": "2026-10-04T13:56:17.915336+00:00",
+ "cells_in": 34051,
+ "cells_kept": 33712,
+ "source_genes": 34241,
+ "mapped_genes": 19663,
+ "measured_canonical": 19663,
+ "qc": {
+  "min_genes": 200,
+  "min_umi": 500,
+  "max_mito_pct": 20.0
+ },
+ "samples": 7,
+ "recipe_k": 1000,
+ "cells_per_bulk": 5000,
+ "panel_measured": 5929,
+ "c1q_measured": {
+  "C1QA": true,
+  "C1QB": true,
+  "C1QC": true
+ },
+ "conditions_sha256": "6968ba6f73762f535d2008fa5d4d129fb2515e87b143df0affac90bad483d0e9",
+ "code_sha256": "fb857206083b99c9a253f47e88d5e88a8531e66967b4c47686b51ff9f11d871b"
+}

paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/data/dress/samples.csv

@@ -0,0 +1,8 @@
+sample_id,group,n_cells,pseudobulk_umi
+DRESS_Day4_BACT,DRESS|bacterial_stim,1164,19086015.0
+DRESS_Day4_TOFA,DRESS|tofacitinib,2880,19280894.0
+PBMC_DRESS1,DRESS|none,7592,57045856.0
+PBMC_HV,healthy|none,8588,44190747.0
+PBMC_POST2W,unspecified|none,6574,23477763.0
+PBMC_T4_BACT,unspecified|bacterial_stim,1978,18968487.0
+PBMC_T4_CTRL,unspecified|control,4936,22130617.0

paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/data/kawasaki/samples.csv

@@ -0,0 +1,16 @@
+sample_id,group,n_cells,pseudobulk_umi
+H1_health,HC,5687,22343174.0
+H2_health,HC,5076,17660403.0
+H3_health,HC,5440,19846187.0
+P1_after,KD_after,7239,37944007.0
+P1_before,KD_before,5953,9852304.0
+P2_after,KD_after,9872,38515046.0
+P2_before,KD_before,5973,22584918.0
+P3_after,KD_after,7215,41185807.0
+P3_before,KD_before,6185,27264408.0
+P4_after,KD_after,10305,20570499.0
+P4_before,KD_before,5658,28152671.0
+P5_after,KD_after,10203,22643627.0
+P5_before,KD_before,8783,32597181.0
+P6_after,KD_after,5608,12981907.0
+P6_before,KD_before,4165,17868370.0

paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/data/sle/samples.csv

@@ -0,0 +1,57 @@
+sample_id,group,n_cells,pseudobulk_umi
+aHD1,aHD,7198,23328897.0
+aHD3,aHD,7191,24914844.0
+aHD4,aHD,6643,19723878.0
+aHD5,aHD,8141,24987653.0
+aHD6,aHD,12267,31566377.0
+aSLE1,aSLE,4321,18032705.0
+aSLE2,aSLE,4521,19445842.0
+aSLE3,aSLE,7462,28585633.0
+aSLE4,aSLE,6209,21128475.0
+aSLE5,aSLE,4588,15442179.0
+aSLE6,aSLE,3730,14750816.0
+aSLE7,aSLE,4561,17530534.0
+cHD1,cHD,13437,45315673.0
+cHD10,cHD,6268,23267360.0
+cHD11,cHD,6659,21732263.0
+cHD2,cHD,8857,36116372.0
+cHD3,cHD,8999,39475270.0
+cHD4,cHD,6027,18590170.0
+cHD5,cHD,5505,15704218.0
+cHD6,cHD,7937,28015711.0
+cHD7,cHD,7176,25709446.0
+cHD8,cHD,7384,25566910.0
+cHD9,cHD,7316,24888051.0
+cSLE1,cSLE,4640,11229901.0
+cSLE10,cSLE,13448,47926463.0
+cSLE11,cSLE,10155,46356862.0
+cSLE12,cSLE,5400,29519760.0
+cSLE13,cSLE,5313,28472130.0
+cSLE14,cSLE,4458,20721848.0
+cSLE15,cSLE,6427,28043024.0
+cSLE16,cSLE,5560,25176067.0
+cSLE17,cSLE,6135,32462411.0
+cSLE18,cSLE,3049,13625582.0
+cSLE19,cSLE,6703,20915716.0
+cSLE2,cSLE,5192,12241449.0
+cSLE20,cSLE,5454,14501658.0
+cSLE21,cSLE,2784,7991121.0
+cSLE22,cSLE,5003,13796005.0
+cSLE23,cSLE,3646,11830750.0
+cSLE24,cSLE,5577,18346357.0
+cSLE25,cSLE,4911,14239573.0
+cSLE26,cSLE,5670,20473512.0
+cSLE27,cSLE,6017,25259752.0
+cSLE28,cSLE,4748,14483409.0
+cSLE29,cSLE,5754,16782003.0
+cSLE3,cSLE,3893,12230127.0
+cSLE30,cSLE,7645,24470922.0
+cSLE31,cSLE,4448,14672858.0
+cSLE32,cSLE,6643,19212803.0
+cSLE33,cSLE,7645,24414191.0
+cSLE4,cSLE,6171,16617711.0
+cSLE5,cSLE,4213,12068284.0
+cSLE6,cSLE,5433,15746796.0
+cSLE7,cSLE,3897,11186979.0
+cSLE8,cSLE,6245,18997853.0
+cSLE9,cSLE,13561,49393231.0