Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/finalize_scsemi_immicro_cv_budget_20261005.log

@@ -0,0 +1,42 @@
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/fold0
+unit=ftscore-score-immicro-scsemi_cv_20261002-f0-20261005T210511 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_cv_20261002-f0_20261005T210511.log
+unit ftscore-score-immicro-scsemi_cv_20261002-f0-20261005T210511 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/fold1
+unit=ftscore-score-immicro-scsemi_cv_20261002-f1-20261005T210525 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_cv_20261002-f1_20261005T210525.log
+unit ftscore-score-immicro-scsemi_cv_20261002-f1-20261005T210525 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/fold2
+unit=ftscore-score-immicro-scsemi_cv_20261002-f2-20261005T210538 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_cv_20261002-f2_20261005T210538.log
+unit ftscore-score-immicro-scsemi_cv_20261002-f2-20261005T210538 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/fold3
+unit=ftscore-score-immicro-scsemi_cv_20261002-f3-20261005T210551 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_cv_20261002-f3_20261005T210551.log
+unit ftscore-score-immicro-scsemi_cv_20261002-f3-20261005T210551 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/fold4
+unit=ftscore-score-immicro-scsemi_cv_20261002-f4-20261005T210604 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_cv_20261002-f4_20261005T210604.log
+unit ftscore-score-immicro-scsemi_cv_20261002-f4-20261005T210604 finished rc=0
+unit=ftscore-pool-immicro-scsemi_cv_20261002-20261005T210617 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/pool-immicro-scsemi_cv_20261002_20261005T210617.log
+unit ftscore-pool-immicro-scsemi_cv_20261002-20261005T210617 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled
+unit=ftscore-score-immicro-scsemi_cv_20261002-pooled-20261005T210630 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_cv_20261002-pooled_20261005T210630.log
+unit ftscore-score-immicro-scsemi_cv_20261002-pooled-20261005T210630 finished rc=0
+finalize_scsemi_cv_budget immicro cv done 2026-10-05T21:07:03+09:00 failed=0 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002
+scoring 8 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/fold0
+unit=ftscore-score-immicro-scsemi_budget_20261002-f0-20261005T210703 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_budget_20261002-f0_20261005T210703.log
+unit ftscore-score-immicro-scsemi_budget_20261002-f0-20261005T210703 finished rc=0
+scoring 8 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/fold1
+unit=ftscore-score-immicro-scsemi_budget_20261002-f1-20261005T210736 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_budget_20261002-f1_20261005T210736.log
+unit ftscore-score-immicro-scsemi_budget_20261002-f1-20261005T210736 finished rc=0
+scoring 8 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/fold2
+unit=ftscore-score-immicro-scsemi_budget_20261002-f2-20261005T210810 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_budget_20261002-f2_20261005T210810.log
+unit ftscore-score-immicro-scsemi_budget_20261002-f2-20261005T210810 finished rc=0
+scoring 8 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/fold3
+unit=ftscore-score-immicro-scsemi_budget_20261002-f3-20261005T210843 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_budget_20261002-f3_20261005T210843.log
+unit ftscore-score-immicro-scsemi_budget_20261002-f3-20261005T210843 finished rc=0
+scoring 8 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/fold4
+unit=ftscore-score-immicro-scsemi_budget_20261002-f4-20261005T210916 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_budget_20261002-f4_20261005T210916.log
+unit ftscore-score-immicro-scsemi_budget_20261002-f4-20261005T210916 finished rc=0
+unit=ftscore-pool-immicro-scsemi_budget_20261002-20261005T210949 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/pool-immicro-scsemi_budget_20261002_20261005T210949.log
+unit ftscore-pool-immicro-scsemi_budget_20261002-20261005T210949 finished rc=0
+scoring 8 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled
+unit=ftscore-score-immicro-scsemi_budget_20261002-pooled-20261005T211032 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-immicro-scsemi_budget_20261002-pooled_20261005T211032.log
+unit ftscore-score-immicro-scsemi_budget_20261002-pooled-20261005T211032 finished rc=0
+finalize_scsemi_cv_budget immicro budget done 2026-10-05T21:12:15+09:00 failed=0 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002

paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/finalize_scsemi_ji2025_chili_cv_20261002.log

@@ -0,0 +1,28 @@
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/scsemi_cv_20261002/fold0
+Running as unit: ftscore-score-ji2025_chili-scsemi_cv_20261002-f0-20261002T175745.service; invocation ID: 02b7db3009ac46f8b8b6cb20b38134c4
+unit=ftscore-score-ji2025_chili-scsemi_cv_20261002-f0-20261002T175745 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-ji2025_chili-scsemi_cv_20261002-f0_20261002T175745.log
+unit ftscore-score-ji2025_chili-scsemi_cv_20261002-f0-20261002T175745 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/scsemi_cv_20261002/fold1
+Running as unit: ftscore-score-ji2025_chili-scsemi_cv_20261002-f1-20261002T175758.service; invocation ID: 6735c2a26ff64327b978c34da1c374de
+unit=ftscore-score-ji2025_chili-scsemi_cv_20261002-f1-20261002T175758 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-ji2025_chili-scsemi_cv_20261002-f1_20261002T175758.log
+unit ftscore-score-ji2025_chili-scsemi_cv_20261002-f1-20261002T175758 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/scsemi_cv_20261002/fold2
+Running as unit: ftscore-score-ji2025_chili-scsemi_cv_20261002-f2-20261002T175811.service; invocation ID: 188281352b0d439880492effbc8afb71
+unit=ftscore-score-ji2025_chili-scsemi_cv_20261002-f2-20261002T175811 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-ji2025_chili-scsemi_cv_20261002-f2_20261002T175811.log
+unit ftscore-score-ji2025_chili-scsemi_cv_20261002-f2-20261002T175811 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/scsemi_cv_20261002/fold3
+Running as unit: ftscore-score-ji2025_chili-scsemi_cv_20261002-f3-20261002T175824.service; invocation ID: fa69b8bcf3744b99bad2ff93358f7c54
+unit=ftscore-score-ji2025_chili-scsemi_cv_20261002-f3-20261002T175824 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-ji2025_chili-scsemi_cv_20261002-f3_20261002T175824.log
+unit ftscore-score-ji2025_chili-scsemi_cv_20261002-f3-20261002T175824 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/scsemi_cv_20261002/fold4
+Running as unit: ftscore-score-ji2025_chili-scsemi_cv_20261002-f4-20261002T175837.service; invocation ID: 59cfd25a8e5746c8a2f9f6d423ff0426
+unit=ftscore-score-ji2025_chili-scsemi_cv_20261002-f4-20261002T175837 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-ji2025_chili-scsemi_cv_20261002-f4_20261002T175837.log
+unit ftscore-score-ji2025_chili-scsemi_cv_20261002-f4-20261002T175837 finished rc=0
+Running as unit: ftscore-pool-ji2025_chili-scsemi_cv_20261002-20261002T175850.service; invocation ID: 265e601b7c734368b8838a040bf1ca70
+unit=ftscore-pool-ji2025_chili-scsemi_cv_20261002-20261002T175850 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/pool-ji2025_chili-scsemi_cv_20261002_20261002T175850.log
+unit ftscore-pool-ji2025_chili-scsemi_cv_20261002-20261002T175850 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/scsemi_cv_20261002/pooled
+Running as unit: ftscore-score-ji2025_chili-scsemi_cv_20261002-pooled-20261002T175853.service; invocation ID: abe5921a7c344a8bab4925a7bb69c012
+unit=ftscore-score-ji2025_chili-scsemi_cv_20261002-pooled-20261002T175853 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-ji2025_chili-scsemi_cv_20261002-pooled_20261002T175853.log
+unit ftscore-score-ji2025_chili-scsemi_cv_20261002-pooled-20261002T175853 finished rc=0
+finalize_scsemi_cv_budget ji2025_chili cv done 2026-10-02T17:59:06+09:00 failed=0 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/scsemi_cv_20261002

paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/scsemi_cv_20261002/pooled/per_donor.csv

@@ -0,0 +1,34 @@
+arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
+scsemi__raw,N064_TOL,TOL,1500,2498,150,0.57,0.6517213771016813,0.054,0.044035228182546036,0.26666666666666666,0.1677341873498799,0.05733333333333333,0.07606084867894315,0.04733333333333333,0.010008006405124099,0.004666666666666667,0.05044035228182546,0.2924451561248999,0.403363787668748,0.5051493336195176,23,False,0.9266666666666666,0.3,0.72,0.06666666666666667,26.666666666666668,16.77341873498799,1066.0,662.0
+scsemi__raw,N064_FU1,FU1,1500,4659,150,0.7973333333333333,0.6396222365314446,0.006,0.016527151749302426,0.062,0.13865636402661516,0.1,0.19167203262502683,0.03133333333333333,0.00472204335694355,0.0033333333333333335,0.008800171710667526,0.36864477355655717,0.4106007815223675,0.5064703997048211,23,False,0.8866666666666667,0.06,0.6266666666666667,0.05333333333333334,6.2,13.865636402661515,1067.0,925.0
+scsemi__raw,N032_AC,AC,1500,7350,150,0.576,0.5891156462585034,0.032,0.10979591836734694,0.10933333333333334,0.17551020408163265,0.17466666666666666,0.04707482993197279,0.098,0.025714285714285714,0.01,0.0527891156462585,0.3997551020408164,0.40579421372527663,0.5478683023890842,16,False,0.9266666666666666,0.6666666666666666,0.4866666666666667,0.2866666666666667,10.933333333333334,17.551020408163264,1094.0,437.0
+scsemi__raw,N038_BC,BC,1500,2801,150,0.7313333333333333,0.5608711174580507,0.04666666666666667,0.0046411995715815784,0.07266666666666667,0.16565512317029632,0.12266666666666666,0.2170653338093538,0.024,0.034273473759371655,0.0026666666666666666,0.017493752231345947,0.4249753659407353,0.3481378884463771,0.6892421334208834,9,False,0.9866666666666667,0.09333333333333334,0.7733333333333333,0.18,7.2666666666666675,16.565512317029633,1065.0,1317.0
+scsemi__raw,N038_AC,AC,1500,3976,150,0.5253333333333333,0.6830985915492958,0.06066666666666667,0.00829979879275654,0.2786666666666667,0.1290241448692153,0.08066666666666666,0.12072434607645875,0.048666666666666664,0.03194164989939638,0.006,0.026911468812877263,0.4374688128772636,0.4636716646911493,0.661776646485223,7,False,0.96,0.30666666666666664,0.6,0.17333333333333334,27.866666666666667,12.90241448692153,1066.0,910.5
+scsemi__raw,N055_AC,AC,1500,4308,150,0.36333333333333334,0.340297121634169,0.07733333333333334,0.07799442896935933,0.42933333333333334,0.32474466109563604,0.07933333333333334,0.2051996285979573,0.027333333333333334,0.0060352831940575676,0.023333333333333334,0.0457288765088208,0.2978458681522749,0.3037845097207051,0.6515429782713951,3,False,0.8666666666666667,0.12666666666666668,0.44,0.24666666666666667,42.93333333333334,32.47446610956361,1061.5,1139.5
+scsemi__raw,N136_TOL,TOL,1500,759,150,0.20666666666666667,0.48616600790513836,0.07,0.10013175230566534,0.36533333333333334,0.19104084321475626,0.12733333333333333,0.0922266139657444,0.2,0.0013175230566534915,0.030666666666666665,0.12911725955204217,0.8161633728590251,0.31649479655351276,0.6703013264190718,4,False,0.7666666666666667,0.03333333333333333,0.32666666666666666,0.2733333333333333,36.53333333333333,19.104084321475625,1013.0,1837.0
+scsemi__raw,N136_FU1,FU1,1500,2927,150,0.17466666666666666,0.4246668944311582,0.066,0.14724974376494704,0.5146666666666667,0.19337205329689103,0.13666666666666666,0.09531943969935087,0.076,0.0023915271609156134,0.032,0.13700034164673727,0.8725006263523516,0.41630882593211405,0.6624523375845527,1,True,0.8,0.1,0.2733333333333333,0.38,51.46666666666667,19.3372053296891,1012.0,1501.0
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paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/scsemi_cv_20261002/pooled/summary.json

@@ -0,0 +1,567 @@
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