Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw2/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,3250,0.1927388607308392,0.28418337062604826,0.058642668816707016,0.5077771413619353
+zero_filled,T cell,pseudobulk_log1p_cpm,3250,0.17283110913620406,0.2620470604793019,0.017196519593117295,0.6093262037209772
+zero_filled,B cell,mean_cp10k,3308,0.20899738375560256,0.301568070894857,0.10986522550107648,0.3703877200071306
+zero_filled,B cell,pseudobulk_log1p_cpm,3308,0.30322798887777674,0.3165050349105062,0.18696030909537337,0.46073168336184045
+zero_filled,Monocyte,mean_cp10k,3287,0.5631674762936933,0.5587432606078608,0.36326345100535157,0.5618950103988798
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3287,0.4975701439952183,0.6315053831846796,0.06750291010097273,0.7313896168636501
+zero_filled,NK cell,mean_cp10k,3233,0.1849277850928083,0.21023399085209113,0.07995561047129582,0.5755749214215957
+zero_filled,NK cell,pseudobulk_log1p_cpm,3233,0.12716723815315462,0.08941555025367794,0.09109111952176913,0.7421781362431913
+covered,T cell,mean_cp10k,3227,0.20292164875239754,0.2338388334375301,0.0791590072124458,0.6059594418393045
+covered,T cell,pseudobulk_log1p_cpm,3227,0.17560768652411704,0.26034844098236337,0.008594521883754475,0.6502967896851259
+covered,B cell,mean_cp10k,3285,0.22054035592405938,0.25466275295773616,0.12364053522795432,0.44572814565941776
+covered,B cell,pseudobulk_log1p_cpm,3285,0.3070971757053307,0.32451055618893787,0.17898115294181172,0.4922207609576643
+covered,Monocyte,mean_cp10k,3264,0.5778909511099305,0.530924922462603,0.3649175196423212,0.6417903040383872
+covered,Monocyte,pseudobulk_log1p_cpm,3264,0.49981611248221464,0.642580656685353,0.020656545142743253,0.7618720752698748
+covered,NK cell,mean_cp10k,3210,0.19598255034164472,0.14571592542428788,0.13345639962127095,0.6839054364350411
+covered,NK cell,pseudobulk_log1p_cpm,3210,0.13073509433288943,0.08595797356253031,0.1030022926195727,0.7919138898422218

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw2/per_donor.csv

@@ -0,0 +1,78 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
+Abd-PS04,ped_sepsis,0.6003875366389085,0.6077745768485404,0.7353191667575951,0.7390967781805373,0.7664055790053219,0.0001358477884990952,8.196602513787701e-07,0.14094329234721967,0.010733396322591475,0.011055182620404558,0.17030647825289044,0.7036859562227615,0.7041760330815243,0.5608368507983116,0.1737351592404969,0.17593757707209023,0.02147182969352175,0.012628771602964398,0.00610728750212558,0.003853918150119288,0.09908086882268657,0.102723100063604,0.10258763075793724
+Abd-PS05,ped_sepsis,1.0934434801618136,0.8206597254634734,1.0627447794676936,0.8346913471746434,0.7162588099364529,0.07744812824408266,1.5478789771354921e-06,0.30387059503177355,0.3221584619415694,0.27186919838028767,0.5060658578856152,0.1817391946286126,0.175827297938298,0.07019064124783363,0.25169180274536035,0.345076834569016,0.0891103408434431,0.018169013917915224,0.00029832821788724573,0.008954361640670132,0.14879339852245974,0.2069267930155339,0.021808203350664357
+Abd-PS07,ped_sepsis,1.735208081601886,0.9454451244287131,1.729739020268202,0.867940235804871,0.2247327188940092,0.3898926451589153,3.5527741252802067e-06,0.8626152073732719,0.02645144205898186,0.01833710688576144,0.023329493087557603,0.06972470854550256,0.06632166530897213,0.002304147465437788,0.48242043104316495,0.8645906098132264,0.09331797235023041,0.007438011410463455,0.01332731438381719,0.0002880184331797235,0.02407276178297174,0.03741975083409766,0.018145161290322582
+Abd-PS19,ped_sepsis,1.0613681824283927,0.6973538279735966,1.040396127201202,0.7680306298232056,0.6552024048096192,0.18291992843028987,2.1683588092445946e-06,0.4622995991983968,0.04280195517810226,0.07073032412255198,0.11209919839679358,0.29772928412149213,0.2804844422469064,0.2937124248496994,0.37097552687153307,0.5354348446025993,0.05586172344689379,0.023600340929412416,0.00186650912767624,0.0156563126252505,0.08197296446917024,0.11148171154145677,0.06037074148296593
+Abd-PS20,ped_sepsis,0.7939006109801556,0.42291231183373035,0.7420277662981639,0.4809030333898091,0.1931287400494098,0.407988435402754,0.01208084854979148,0.30496843261048584,0.449093434893547,0.5562648162719093,0.5780949766675817,0.005247828898618903,0.010588698789866171,0.08770244304144935,0.09468330490180464,0.40477352810879863,0.007823222618720834,0.021893208087402236,4.0894130202645025e-06,0.0005489980785067252,0.021093787815873306,0.01628801886661413,0.02086192698325556
+Abd-PS23,ped_sepsis,1.1343534194684726,0.7791472359406613,0.8124666887013764,0.5068569072909828,1.0807488202986,0.17321622840217965,1.956880804310161e-06,0.2529589231840334,0.13886277874731418,0.15542363734100667,0.3272220932931075,0.19994867448565248,0.1808663591265506,0.32142028312833604,0.18921218704455323,0.30113583309492253,0.013460199582269667,0.01743526891704861,0.0002212881821966893,0.002088651659317707,0.2813248624032519,0.3623509253745191,0.08284984915293572
+Abd-PS27,ped_sepsis,0.9706677926101666,0.4040584143472655,1.0106344895118509,0.33621965876629467,0.5955499451928856,0.4682754737289997,0.14861023723507588,0.6126021003500584,0.019084170288063505,0.048446549720453015,0.06078285774901877,0.11595749441235914,0.12592165540273695,0.13196138750397793,0.10482852559632519,0.47211899951061503,0.010289593720165482,0.01218028121473075,4.198941403258158e-06,0.0029701920016972526,0.2796740547595218,0.20489835918971594,0.1813938686750822
+Abd-S102,adult_sepsis,1.6782330828677003,1.618501048127995,1.686425714122301,1.6312711958631239,0.6030367255396691,0.0320285651986738,1.0711100599852359e-06,0.47981497056349875,0.031723433866008316,0.034619370862180116,0.39318755256518084,0.4488697782493137,0.46321706629136106,0.0053616484440706475,0.2465838880497416,0.23137171672988469,0.095878889823381,0.012530081514171213,1.4522541284693883e-06,0.0007359125315391085,0.22826425312209128,0.2707893227523857,0.02502102607232969
+Abd-S103,adult_sepsis,0.9631700927272578,0.7105242720216741,1.1389177374263986,0.9369620706702707,0.7122563939297464,0.12677953295906733,9.363972003659247e-07,0.4813753581661891,0.20801782760569343,0.16354189507955205,0.14782977820227103,0.12382335642384999,0.12492411634932545,0.0024408362517245037,0.2086479149717255,0.3333262048492567,0.04393505253104107,0.00919095062518948,1.6220359446022013e-06,0.00021224663058473945,0.32354041741447415,0.3782052252887209,0.3242067282181895
+Abd-S120,adult_sepsis,0.8196116636350135,0.682863298642409,0.8434266508206327,0.7396919249294505,0.7438971698656983,0.07597408782313779,9.470581829697852e-07,0.3140238630468615,0.007114408108986354,0.015576525028701785,0.11049628220646723,0.5342836124531296,0.48294661186417687,0.46446481065191075,0.32305058105468865,0.437014861045319,0.07297250561992046,0.00664151380821554,1.4444960926247214e-06,0.0008646031471554556,0.05293579675184197,0.06445961050752669,0.03717793532768459
+Abd-S123,adult_sepsis,0.6680350434384519,0.681330470770891,0.5185879460731015,0.49571564041024374,1.36734677462031,1.707128859537737e-05,7.194381939648284e-07,0.16986823305286552,0.019391682436852537,0.020528548680856587,0.08779171297031275,0.4003641756771682,0.40668234600618297,0.5027782187648833,0.31668820114184587,0.34267788631703405,0.10938244165740593,0.008194837817516527,2.8057335688313585e-06,0.0007937767899666614,0.2553440316380215,0.23010769382416368,0.1293856167645658
+Abd-S156,adult_sepsis,0.9192811905258049,0.975701773620351,0.8334121792710396,0.8280804404153022,0.6531612411955073,1.510320659565348e-05,1.028190480089063e-06,0.3343803540833809,0.0022981729253060894,0.0010319788047978738,0.08209594517418618,0.3203726731515835,0.35114688276685235,0.39406053683609366,0.16107792750436395,0.20700787819291178,0.0910908052541405,0.006960853980322862,1.3310800500355765e-06,0.0012849800114220445,0.509275269231828,0.4408109009649078,0.0970873786407767
+Abd-S39,adult_sepsis,1.1191744268190746,1.1743260084043994,0.6283627221240495,0.6920537297528777,1.3953639400295192,1.3153727383847762e-05,7.520239981899393e-07,0.13819622465625728,0.012762066965569691,0.009059346126379373,0.06152412025168958,0.29309370239452287,0.32578201714123173,0.6933115823817292,0.1657359058211302,0.1994349137325088,0.049638778839431366,0.004567379580523835,8.740487950985187e-07,0.0013982754602656724,0.5238277915108697,0.4657220969270868,0.05593101841062689
+Abd-S42,adult_sepsis,1.3137875713927978,1.0333471748769616,1.3952727263805107,1.0922955641042549,0.1155809349779199,0.1855392721393842,1.843475798629557e-06,0.5748439165524593,0.009273755513495931,0.02776617780056471,0.09760925841327851,0.25655249109151257,0.25160408211963264,0.17039744175422566,0.47604362423033914,0.6329507401783818,0.05862646566164154,0.0147764214085433,0.0030379126902986267,0.0016750418760469012,0.0578144356167249,0.08463924373532354,0.0968478757423481
+Abd-S47,adult_sepsis,1.1895762177327507,0.4230824883909177,1.1429909567888543,0.4441301531940507,0.1404129971145402,0.5865806946583372,0.12075892451320558,0.7027976414502571,0.11426700531854213,0.19199279851102258,0.20474219044034625,0.057497395378442014,0.058951244333554136,0.03224187680341237,0.18817685459883782,0.5742438912377815,0.019069125580228326,0.01780527046959043,0.005562753366215906,0.0006272738677706687,0.03567277957625048,0.0484903880382204,0.040521891857985194
+Abd-S51,adult_sepsis,0.8214372411039952,0.6193989589265405,0.927043159715179,0.7779462060734658,0.4022083029861617,0.12224195783592305,1.4288261617274329e-06,0.25273124544792425,0.09027269234392395,0.1114940802649579,0.269482884195193,0.4274715199018176,0.4164916835402357,0.3551347414420976,0.2525817051811384,0.3459832518751115,0.03670793882010197,0.020241777890773506,0.015337284713351345,0.0014566642388929353,0.08719034684642342,0.11069227078018173,0.08448652585579024
+Abd-S54,adult_sepsis,1.113381045394243,0.9644397283283035,1.1102913534752004,0.9572932518917394,0.4544732668201586,0.09634960773370825,1.2516693979219014e-06,0.4854182655410591,0.04332871178083014,0.06520640931217075,0.1364799181376311,0.21289753754565738,0.2051325632638766,0.012918905090816066,0.560885720374163,0.6321265234052611,0.340752110514198,0.021162922035197,0.007527083618781239,0.0011511895625479663,0.06537550053044427,0.09000616873051227,0.023279611153747763
+Abd-S57,adult_sepsis,1.7051159572150705,1.3889642006519771,1.7051029490510237,1.3963074032570328,0.3499777482331537,0.15681826232516,1.2349544248880008e-06,0.8422783570079071,4.654492508296629e-06,1.1475950544176257e-06,0.009026660135749773,0.34679016540763524,0.34816795140477175,0.016164019312854244,0.3611036214635627,0.4771470810027984,0.10671051710866979,0.006992871819113217,4.189959072570259e-06,0.0012595339724302008,0.12829042449202052,0.17467839508387797,0.024560912462388916
+Abd-S66,adult_sepsis,1.377244496619805,1.3151576835471357,1.425886368041894,1.3805627132628446,0.5198174343485191,0.04022757944201523,1.4057529063915037e-06,0.49295242889504154,0.033882478859926624,0.043436862750870324,0.23873647118046817,0.4546884179421835,0.4637590312369202,0.03788069468915178,0.4091988651367677,0.43345769803174095,0.18688648376541656,0.01313424063842375,5.931713881837631e-06,0.0003775484520513466,0.04886841798068305,0.059339070513680245,0.04316637301787063
+Abd-S79,adult_sepsis,1.5271309630940468,1.1986503343738488,1.5442426541042724,1.2557724765736133,0.3639874026189292,0.20131656572813672,2.2723097314965753e-06,0.5500994530084535,0.05838362760209451,0.09545760666040064,0.30892590750870214,0.35517971434658585,0.3474458645050947,0.024365987071108902,0.3029366363069327,0.4740487589678033,0.09373446046742914,0.024133723122344977,0.001124788657767337,0.00012431626056688214,0.05804973289390527,0.08192070889920264,0.022749875683739432
+Abd-S83,adult_sepsis,1.4009642630221517,1.361146271866967,1.507639502050214,1.4810531629458057,0.6932227411821548,1.2989022623240457e-05,7.80428377187477e-07,0.3924947656627476,1.6454476411955068e-05,2.7584720581753443e-06,0.16991464003865356,0.5140055013381674,0.5283883317510102,0.049927524561120956,0.18314359547487388,0.16422564785812416,0.3013367692059913,0.00733059910134855,1.1958228108990713e-06,0.0009663391850539539,0.29549086058657503,0.3073812856676193,0.0853599613464326
+Abd-S98,adult_sepsis,1.7177572498620528,1.7103954243558852,1.717756300411683,1.7107899905057091,0.5073293413173653,0.0020815481216449917,6.120551347975704e-07,0.7477045908183633,6.168842129006862e-06,2.266806085277778e-06,0.10958083832335329,0.49780542328446387,0.504791774809902,0.019560878243512974,0.37210158258006415,0.35946563754892297,0.11037924151696607,0.007119717839569608,7.317366955675937e-07,0.0015968063872255488,0.1208855593321285,0.13573897704325924,0.011177644710578843
+HC01,adult_HC,1.2537049544764534,0.8032874381208105,1.2746321966627525,0.8529227120283609,0.160859136931092,0.26710539422813784,3.7865297023574496e-06,0.5901897178806645,0.026248099328410532,0.06287775381419858,0.09938071365378945,0.22929957619311064,0.21006885205819317,0.1862774009633343,0.4217380156046556,0.6602168793617628,0.06772830040302762,0.033020361018659766,0.028244946341985225,0.028408532389658903,0.02258855362702555,0.03858778189415794,0.028015334709525212
+HC05,adult_HC,1.4358140401515767,0.9890231764674743,1.4122170601788397,0.9564306553942369,0.2237682468021068,0.256732025200456,3.1204232342466776e-06,0.6924604966139954,0.03726218578281817,0.07454754011108404,0.09498871331828443,0.10705907427412685,0.10090375983948752,0.08099322799097065,0.5651533705163524,0.7933864332935946,0.10455981941309254,0.01950004637779523,0.006639384852647507,0.01164785553047404,0.014293297848451389,0.024519761479952256,0.015349887133182845
+HC07,adult_HC,0.8362753347442204,0.7023410109175929,0.8540044946062777,0.7163890930266807,0.629579018888436,0.07685640786514737,7.965660608487273e-07,0.3848348960456584,0.004541834746008295,0.01023810144005258,0.03770892784345699,0.25637258364307886,0.24156176417992872,0.21962902568283735,0.6225190795817184,0.7032701940789083,0.3080921320831635,0.016179829230301118,0.013429386517414363,0.019262128006522626,0.023530264933745902,0.03149975721763516,0.03047289033836119
+HC09,adult_HC,1.3553401238234963,0.9268857857342199,1.3687442698606929,0.914720664967199,0.2344963835503203,0.2425627457464526,2.777518187216814e-06,0.6319487497416821,0.005406700728676384,0.02604385752148678,0.06013639181649101,0.16597951159149538,0.1533166148960991,0.1529241578838603,0.5562982762594826,0.7884573523378228,0.11365984707584212,0.020148366020471636,0.014879355682166086,0.012399256044637322,0.009604399653421358,0.01730004204423792,0.028931597437487085
+HC12,adult_HC,1.1462908941707386,0.7885744513619438,1.1419909349132962,0.7685097642992765,0.4434193548387097,0.19728175689562114,2.229791403781552e-06,0.5456989247311828,0.011388006670718766,0.02980931237053877,0.05725806451612903,0.15314941464950108,0.14677689628185892,0.14623655913978495,0.5896385141756565,0.7641422538932262,0.2196236559139785,0.017081836359430013,0.009449640936666013,0.008870967741935484,0.03146047124907246,0.04981966672630625,0.022311827956989248
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw2/summary.json

@@ -0,0 +1,147 @@
+{
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+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw2_cibersortx/contrast.csv

@@ -0,0 +1,17 @@
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+covered,Monocyte,pseudobulk_log1p_cpm,2151,0.31428027856148993,0.6549537920120095,-0.3127230552301525,0.7274326312662035
+covered,NK cell,mean_cp10k,2092,0.059744583369573306,0.21622470938210786,0.0001981865744342593,0.27544756844321616
+covered,NK cell,pseudobulk_log1p_cpm,2092,0.16645124248950788,0.23856939641394373,0.07270895859438838,0.43057628412227034