Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw3_cibersortx/per_donor.csv +12 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw3_cibersortx/summary.json +157 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw3_full/contrast.csv +17 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw3_full/per_donor.csv +12 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw3_cibersortx/per_donor.csv
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donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw3_cibersortx/summary.json
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| 1 |
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{
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| 2 |
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"dataset": "giroux2022",
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| 3 |
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"comparison": "fewshot",
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| 4 |
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"draw": 3,
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| 5 |
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"gene_mode": "cibersortx",
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| 6 |
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"stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_nosex/giroux2022/fewshot_n5/draw3",
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| 7 |
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"lora_arm": "lora5",
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| 8 |
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"n_donors": 11,
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| 9 |
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"contrast": true,
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| 10 |
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| 13 |
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},
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"mean_fraction": {
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| 21 |
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"final_cells": {
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| 23 |
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| 25 |
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| 26 |
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| 27 |
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"Other": 0.3403
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| 28 |
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},
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| 29 |
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"first_cells": {
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| 34 |
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| 36 |
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},
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| 37 |
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"final_mrna": {
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| 40 |
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| 44 |
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"first_mrna": {
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| 46 |
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| 51 |
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| 52 |
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}
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| 53 |
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},
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"per_type_logfc_r": {
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"T cell": 0.1402,
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"B cell": NaN,
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"Monocyte": 0.0623,
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"NK cell": NaN
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}
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},
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"observed_mean_fraction": {
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| 73 |
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},
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| 74 |
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+
"fewshot3|Monocyte": 541,
|
| 150 |
+
"fewshot3|NK cell": 0,
|
| 151 |
+
"fewshot3|DC": 0,
|
| 152 |
+
"fewshot3|Other": 0
|
| 153 |
+
},
|
| 154 |
+
"tool_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
|
| 155 |
+
"score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 156 |
+
"seconds": 1.3
|
| 157 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw3_full/contrast.csv
ADDED
|
@@ -0,0 +1,17 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
|
| 2 |
+
zero_filled,T cell,mean_cp10k,2885,0.5101396037572368,0.48293726194492714,0.18809249395056846,0.9530018245861495
|
| 3 |
+
zero_filled,T cell,pseudobulk_log1p_cpm,2885,0.5930799288647017,0.5970877120883473,0.04704477371082652,0.9810378745450903
|
| 4 |
+
zero_filled,B cell,mean_cp10k,3018,0.3236509472090482,0.41293366241481094,0.1346998400609177,0.5322744578572465
|
| 5 |
+
zero_filled,B cell,pseudobulk_log1p_cpm,3018,0.21900527917472776,0.5475061174438233,-0.0072657052059144946,0.4101330498956863
|
| 6 |
+
zero_filled,Monocyte,mean_cp10k,3038,0.6215278028939337,0.5620368696559213,0.3215084785110009,0.891578973170441
|
| 7 |
+
zero_filled,Monocyte,pseudobulk_log1p_cpm,3038,0.6346118052083541,0.6465616290263949,0.045777711503476856,0.96795399393363
|
| 8 |
+
zero_filled,NK cell,mean_cp10k,2926,0.15961329663056695,0.4050843663489531,0.03797181740472638,0.3126175697406989
|
| 9 |
+
zero_filled,NK cell,pseudobulk_log1p_cpm,2926,0.08823746290153187,0.5070324025538827,-0.01703994720446017,0.20239473279843417
|
| 10 |
+
covered,T cell,mean_cp10k,2810,0.5143946398433364,0.4829380405987024,0.20763681753155613,0.9609348660176913
|
| 11 |
+
covered,T cell,pseudobulk_log1p_cpm,2810,0.5981177653606606,0.5997663140678887,0.036895201057504316,0.9904728730856636
|
| 12 |
+
covered,B cell,mean_cp10k,2940,0.3257482415016091,0.41195727415532646,0.13619273829365577,0.5365173056589534
|
| 13 |
+
covered,B cell,pseudobulk_log1p_cpm,2940,0.22148968682322798,0.5506081825491758,-0.008300787990276193,0.41372079427851977
|
| 14 |
+
covered,Monocyte,mean_cp10k,2973,0.6235861765323132,0.5621829035496565,0.32632149302876784,0.8983153298547779
|
| 15 |
+
covered,Monocyte,pseudobulk_log1p_cpm,2973,0.6394431152957816,0.6475359770660667,0.04553261253509422,0.9757805068692218
|
| 16 |
+
covered,NK cell,mean_cp10k,2856,0.16094500482504034,0.4030097636023028,0.03899169394451872,0.3153286762263789
|
| 17 |
+
covered,NK cell,pseudobulk_log1p_cpm,2856,0.0884703072180453,0.5087044705081749,-0.017844472210029706,0.20348147371206435
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw3_full/per_donor.csv
ADDED
|
@@ -0,0 +1,12 @@
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
|
| 2 |
+
0B943B_d0,mild,1.857335396471317,1.3117713325472078,1.695511625860622,0.971148756038867,0.2408551951104843,0.25364011188550384,6.635603178246724e-07,0.6220028208744711,3.6108968469974675e-06,7.88171387835506e-07,0.08312764456981664,0.06411063324218147,0.04497265274924175,0.12588152327221439,1.7459005120504663e-06,5.5364797810417e-07,0.11865303244005641,6.859621415524632e-07,9.779620567921155e-08,0.023977433004231313,0.6822432121128141,0.9550252440748688,0.026357545839210156
|
| 3 |
+
0B943B_d14,mild,1.7378760633043642,1.5241767182759711,1.5486722771382215,1.2243445818469647,0.265776357827476,0.10391385582555895,1.1258410358514021e-06,0.5652396166134185,0.00454802314222061,0.0029287682127638924,0.11175718849840256,0.08282027410775522,0.08202970241425245,0.17086261980830672,0.002345719928769267,0.0018208445772186338,0.09789137380191694,2.6176979659893168e-06,3.771428026352052e-07,0.009968051118210863,0.80636950929773,0.9132191818119265,0.04428115015974441
|
| 4 |
+
2AD75E_d0,mild,1.9695056561236766,1.17557342833137,1.9267442156057766,0.7766761715356512,0.1683533948611291,0.3769612885212098,1.1358970069606873e-06,0.6034056934875861,0.002348363939598197,0.0020169637590343524,0.06408423241908229,0.020984887352561318,0.005277991018184302,0.14064734173924348,0.004366925888896831,0.0009314692402991432,0.15949564539191471,0.0005324518751919908,2.4376677998268435e-07,0.025347718705316522,0.5948060824225418,0.9917721963186952,0.007019368256856883
|
| 5 |
+
2AD75E_d7,mild,1.958608065376416,1.2537119258393226,1.9253162606599874,0.8704168282047657,0.1992883131726831,0.34473218358006513,1.3347821991058827e-06,0.5808172206876845,0.009339711394552691,0.008880193472791918,0.14372797409277074,0.007061017171625881,2.2604594486411413e-06,0.10277169254214687,3.965498421288039e-06,1.1741827650710292e-06,0.14715687208305553,0.00019651080247047215,3.5578138412021723e-07,0.013715591961139155,0.6386666115528644,0.9911146813214111,0.011810648633203162
|
| 6 |
+
2AD75E_d14,mild,1.9529443827088007,1.332173324435474,1.8821188066370635,0.9339017468808916,0.2746281040023371,0.29401512605586727,1.0801162802341318e-06,0.5811422728600643,0.005272061409525045,0.003652081443602379,0.12503651767455448,0.024303345461356478,0.009575968077482594,0.14198071866783524,2.4203587704301884e-06,4.914299891115228e-07,0.12496348232544552,2.2400272379175535e-05,2.0335388082271135e-07,0.016579024247735902,0.6763846464421016,0.9867701755787649,0.010297984224364592
|
| 7 |
+
82CCF5_d0,severe,1.7197048909279635,1.3796929885142226,1.5000631428259739,1.0094529091348647,0.2075555555555555,0.16099222808328456,1.3364689085830948e-06,0.5422222222222223,0.00816289142222651,0.007719127174725113,0.11832098765432099,0.06383557176987908,0.056071589216101225,0.1539753086419753,0.0006618002976566676,0.0006019236946871259,0.09303703703703704,0.0007479277500888526,4.915618431379391e-07,0.016691358024691356,0.7655995806768643,0.9356055318837347,0.07575308641975309
|
| 8 |
+
82CCF5_d7,severe,1.9102318219139116,1.5452635435418762,1.8346162703671913,1.2140309842354875,0.285878453038674,0.1748987634428131,6.55719052327751e-07,0.619060773480663,0.001641738839226992,0.000774773267583464,0.09972375690607735,0.018872823152277344,0.012155775736651704,0.14152854511970533,1.3353616852190275e-06,5.071349711625222e-07,0.09410681399631676,1.449569339194928e-06,2.593210655096626e-07,0.013627992633517496,0.8045838896346581,0.9870680288206758,0.03195211786372008
|
| 9 |
+
82CCF5_d14,severe,1.8218442440153801,1.4124876795621852,1.7090609048443512,1.0448923436751913,0.2461090207428846,0.19452809484771616,9.300567519958546e-07,0.6330499276410999,0.0021395865098755096,0.0013487012437409026,0.10121201157742403,0.02788969289935596,0.01853417747832685,0.11369392185238784,1.4241061982568925e-06,6.214862769067471e-07,0.06828871201157742,4.1635923752207895e-06,2.494638269222731e-07,0.014562228654124458,0.7754370380444789,0.9801153202710764,0.0691931982633864
|
| 10 |
+
0BF51C_d0,severe,1.6962082240859515,1.039408226825136,1.226952361586241,0.5423020460066059,0.5022734254992319,0.2911548607468756,5.607197643547842e-07,0.4012288786482335,1.6834473631809373e-06,4.310715663192493e-07,0.01674347158218126,0.15150273131486552,0.11425990279631154,0.4609831029185868,1.4904394512738547e-06,4.733207127947052e-07,0.07726574500768049,7.12036725890278e-07,1.1144651881124024e-07,0.006144393241167435,0.5573385220147186,0.8857385206451261,0.03763440860215054
|
| 11 |
+
0BF51C_d7,severe,1.7532931245869805,1.1006265923558909,1.6753827449394887,0.6921702771002586,0.2779468909780637,0.3066242701715739,8.661221265034547e-07,0.612370113805047,0.0014258709787023439,0.0017039468876095167,0.05700148441365661,0.031984864727409947,0.011999106990372335,0.1607125185551707,1.6541336672359214e-06,6.526073334903413e-07,0.05294408708560119,1.3550427644317872e-06,1.7633113133333027e-07,0.0073231073725878275,0.6599619849458821,0.9862952510614269,0.10964868876793667
|
| 12 |
+
0BF51C_d14,severe,1.899796252921219,1.2574127100345678,1.8829173458165815,0.8753675208657363,0.2885312782788918,0.30853860726304144,5.311160896287755e-07,0.6330676941938874,0.0034206015819886852,0.003177051655662857,0.07960416849111131,0.013180962810589383,0.0007723220584930931,0.151589456169542,1.4302689174626755e-06,6.289579369143531e-07,0.07907872843506436,8.914687229573897e-07,1.881617518606407e-07,0.010508801120938787,0.6748575066067399,0.9960492780500656,0.04615115158945617
|