Hugging Face's logo

Datasets:
junidude14
/
PBISC-data

Modalities:
Tabular
Text
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
single-cell-rna-seq
bulk-rna-seq
diffusion
Libraries:
Datasets
pandas
Polars
Dataset card Data Studio Files
xet
 Community
1
junidude14 commited on
Commit
b159d1f
·
verified ·
1 Parent(s): a80be6d

Archive 4 checkpoints (1-4)

Browse files
Files changed (4) hide show
  1. paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw0/lora/RUN.json +175 -0
  2. paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw1/lora/RUN.json +175 -0
  3. paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw2/lora/RUN.json +175 -0
  4. paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw3/lora/RUN.json +175 -0
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw0/lora/RUN.json ADDED
@@ -0,0 +1,175 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc_sdd.ft_intradataset.run.v1",
3
+ "source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
4
+ "source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
5
+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro",
6
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/conditions_raw_fixed.npz",
7
+ "condition_npz_sha256": "2be5717d19e86bdf38e4838d4bd2886a211ba78bfbfe749c458305a3e0ac2dcc",
8
+ "fold": 0,
9
+ "mode": "lora",
10
+ "trainable": {
11
+ "mode": "lora",
12
+ "lora_layers": [
13
+ "time_encoder.0",
14
+ "time_encoder.2",
15
+ "condition_encoder.0",
16
+ "condition_encoder.3",
17
+ "context_mixer.2",
18
+ "down_blocks.0.input_projection",
19
+ "down_blocks.0.context_projection.1",
20
+ "down_blocks.1.input_projection",
21
+ "down_blocks.1.context_projection.1",
22
+ "down_blocks.2.input_projection",
23
+ "down_blocks.2.context_projection.1",
24
+ "down_blocks.3.input_projection",
25
+ "down_blocks.3.context_projection.1",
26
+ "up_blocks.0.input_projection",
27
+ "up_blocks.0.context_projection.1",
28
+ "up_blocks.1.input_projection",
29
+ "up_blocks.1.context_projection.1",
30
+ "up_blocks.2.input_projection",
31
+ "up_blocks.2.context_projection.1",
32
+ "output_trunk.0",
33
+ "value_head",
34
+ "active_head"
35
+ ],
36
+ "lora_rank": 16,
37
+ "lora_alpha": 16.0,
38
+ "n_trainable": 1296224,
39
+ "n_total_base": 54185184,
40
+ "trainable_tensors": 44
41
+ },
42
+ "lr": 0.0005,
43
+ "warmup": 200,
44
+ "batch_size": 256,
45
+ "ema_decay": 0.999,
46
+ "max_steps": 3000,
47
+ "steps_run": 3000,
48
+ "eval_every": 250,
49
+ "patience": 8,
50
+ "train_subset": null,
51
+ "train_donors_file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/fewshot_n5/draw0/train_donors.txt",
52
+ "fixed_steps": 3000,
53
+ "selected_step": 3000,
54
+ "selected_inner_val_loss": NaN,
55
+ "pretrained_inner_val_loss": NaN,
56
+ "train_rows": [
57
+ "HS27",
58
+ "HS45",
59
+ "HS54",
60
+ "HS73",
61
+ "HS74"
62
+ ],
63
+ "inner_val_rows": [],
64
+ "test_rows_never_loaded_for_training": [
65
+ "HS1",
66
+ "HS2",
67
+ "HS3",
68
+ "HS4",
69
+ "HS6",
70
+ "HS7",
71
+ "HS8",
72
+ "HS9",
73
+ "HS10",
74
+ "HS11",
75
+ "HS12",
76
+ "HS13",
77
+ "HS14",
78
+ "HS15",
79
+ "HS16",
80
+ "HS17",
81
+ "HS18",
82
+ "HS19",
83
+ "HS20",
84
+ "HS21",
85
+ "HS23",
86
+ "HS24",
87
+ "HS25",
88
+ "HS26",
89
+ "HS28",
90
+ "HS29",
91
+ "HS30",
92
+ "HS31",
93
+ "HS32",
94
+ "HS34",
95
+ "HS35",
96
+ "HS36",
97
+ "HS37",
98
+ "HS38",
99
+ "HS39",
100
+ "HS40",
101
+ "HS41",
102
+ "HS42",
103
+ "HS43",
104
+ "HS44",
105
+ "HS46",
106
+ "HS47",
107
+ "HS48",
108
+ "HS49",
109
+ "HS50",
110
+ "HS51",
111
+ "HS52",
112
+ "HS53",
113
+ "HS55",
114
+ "HS56",
115
+ "HS57",
116
+ "HS58",
117
+ "HS59",
118
+ "HS60",
119
+ "HS61",
120
+ "HS62",
121
+ "HS63",
122
+ "HS64",
123
+ "HS65",
124
+ "HS66",
125
+ "HS67",
126
+ "HS68",
127
+ "HS69",
128
+ "HS70",
129
+ "HS71",
130
+ "HS72",
131
+ "HS75",
132
+ "HS76",
133
+ "HS77",
134
+ "HS78",
135
+ "HS79",
136
+ "HS80",
137
+ "HS81",
138
+ "HS82",
139
+ "HS83",
140
+ "HS84",
141
+ "HS85",
142
+ "HS86",
143
+ "HS87",
144
+ "HS88",
145
+ "HS89",
146
+ "HS90",
147
+ "HS91",
148
+ "HS92",
149
+ "HS93",
150
+ "HS94",
151
+ "HS95",
152
+ "HS96",
153
+ "HS97",
154
+ "HS98",
155
+ "HS100",
156
+ "HS101",
157
+ "HS102",
158
+ "HS103",
159
+ "HS104",
160
+ "HS105",
161
+ "HS106",
162
+ "HS107",
163
+ "HS108",
164
+ "HS109",
165
+ "HS110",
166
+ "HS111"
167
+ ],
168
+ "max_abs_weight_change": 0.5176182985305786,
169
+ "n_tensors_changed": 22,
170
+ "seed": 20260927,
171
+ "wall_seconds": 104.4,
172
+ "written_utc": "2026-09-28T04:13:17.470956+00:00",
173
+ "checkpoint_sha256": "ab9f7571784fade33c990eb9a1922351b9080e016b569f3fa2493538361b467b",
174
+ "reload_forward_max_abs_diff": 0.0
175
+ }
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw1/lora/RUN.json ADDED
@@ -0,0 +1,175 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc_sdd.ft_intradataset.run.v1",
3
+ "source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
4
+ "source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
5
+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro",
6
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/conditions_raw_fixed.npz",
7
+ "condition_npz_sha256": "2be5717d19e86bdf38e4838d4bd2886a211ba78bfbfe749c458305a3e0ac2dcc",
8
+ "fold": 0,
9
+ "mode": "lora",
10
+ "trainable": {
11
+ "mode": "lora",
12
+ "lora_layers": [
13
+ "time_encoder.0",
14
+ "time_encoder.2",
15
+ "condition_encoder.0",
16
+ "condition_encoder.3",
17
+ "context_mixer.2",
18
+ "down_blocks.0.input_projection",
19
+ "down_blocks.0.context_projection.1",
20
+ "down_blocks.1.input_projection",
21
+ "down_blocks.1.context_projection.1",
22
+ "down_blocks.2.input_projection",
23
+ "down_blocks.2.context_projection.1",
24
+ "down_blocks.3.input_projection",
25
+ "down_blocks.3.context_projection.1",
26
+ "up_blocks.0.input_projection",
27
+ "up_blocks.0.context_projection.1",
28
+ "up_blocks.1.input_projection",
29
+ "up_blocks.1.context_projection.1",
30
+ "up_blocks.2.input_projection",
31
+ "up_blocks.2.context_projection.1",
32
+ "output_trunk.0",
33
+ "value_head",
34
+ "active_head"
35
+ ],
36
+ "lora_rank": 16,
37
+ "lora_alpha": 16.0,
38
+ "n_trainable": 1296224,
39
+ "n_total_base": 54185184,
40
+ "trainable_tensors": 44
41
+ },
42
+ "lr": 0.0005,
43
+ "warmup": 200,
44
+ "batch_size": 256,
45
+ "ema_decay": 0.999,
46
+ "max_steps": 3000,
47
+ "steps_run": 3000,
48
+ "eval_every": 250,
49
+ "patience": 8,
50
+ "train_subset": null,
51
+ "train_donors_file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/fewshot_n5/draw1/train_donors.txt",
52
+ "fixed_steps": 3000,
53
+ "selected_step": 3000,
54
+ "selected_inner_val_loss": NaN,
55
+ "pretrained_inner_val_loss": NaN,
56
+ "train_rows": [
57
+ "HS13",
58
+ "HS16",
59
+ "HS58",
60
+ "HS70",
61
+ "HS77"
62
+ ],
63
+ "inner_val_rows": [],
64
+ "test_rows_never_loaded_for_training": [
65
+ "HS1",
66
+ "HS2",
67
+ "HS3",
68
+ "HS4",
69
+ "HS6",
70
+ "HS7",
71
+ "HS8",
72
+ "HS9",
73
+ "HS10",
74
+ "HS11",
75
+ "HS12",
76
+ "HS14",
77
+ "HS15",
78
+ "HS17",
79
+ "HS18",
80
+ "HS19",
81
+ "HS20",
82
+ "HS21",
83
+ "HS23",
84
+ "HS24",
85
+ "HS25",
86
+ "HS26",
87
+ "HS27",
88
+ "HS28",
89
+ "HS29",
90
+ "HS30",
91
+ "HS31",
92
+ "HS32",
93
+ "HS34",
94
+ "HS35",
95
+ "HS36",
96
+ "HS37",
97
+ "HS38",
98
+ "HS39",
99
+ "HS40",
100
+ "HS41",
101
+ "HS42",
102
+ "HS43",
103
+ "HS44",
104
+ "HS45",
105
+ "HS46",
106
+ "HS47",
107
+ "HS48",
108
+ "HS49",
109
+ "HS50",
110
+ "HS51",
111
+ "HS52",
112
+ "HS53",
113
+ "HS54",
114
+ "HS55",
115
+ "HS56",
116
+ "HS57",
117
+ "HS59",
118
+ "HS60",
119
+ "HS61",
120
+ "HS62",
121
+ "HS63",
122
+ "HS64",
123
+ "HS65",
124
+ "HS66",
125
+ "HS67",
126
+ "HS68",
127
+ "HS69",
128
+ "HS71",
129
+ "HS72",
130
+ "HS73",
131
+ "HS74",
132
+ "HS75",
133
+ "HS76",
134
+ "HS78",
135
+ "HS79",
136
+ "HS80",
137
+ "HS81",
138
+ "HS82",
139
+ "HS83",
140
+ "HS84",
141
+ "HS85",
142
+ "HS86",
143
+ "HS87",
144
+ "HS88",
145
+ "HS89",
146
+ "HS90",
147
+ "HS91",
148
+ "HS92",
149
+ "HS93",
150
+ "HS94",
151
+ "HS95",
152
+ "HS96",
153
+ "HS97",
154
+ "HS98",
155
+ "HS100",
156
+ "HS101",
157
+ "HS102",
158
+ "HS103",
159
+ "HS104",
160
+ "HS105",
161
+ "HS106",
162
+ "HS107",
163
+ "HS108",
164
+ "HS109",
165
+ "HS110",
166
+ "HS111"
167
+ ],
168
+ "max_abs_weight_change": 0.505850076675415,
169
+ "n_tensors_changed": 22,
170
+ "seed": 20260927,
171
+ "wall_seconds": 121.7,
172
+ "written_utc": "2026-09-28T04:28:25.570522+00:00",
173
+ "checkpoint_sha256": "877f7cfb8fe467fb970c4934897508517a35b791916ffc6c2afaffa0fbb896a3",
174
+ "reload_forward_max_abs_diff": 0.0
175
+ }
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw2/lora/RUN.json ADDED
@@ -0,0 +1,175 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc_sdd.ft_intradataset.run.v1",
3
+ "source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
4
+ "source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
5
+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro",
6
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/conditions_raw_fixed.npz",
7
+ "condition_npz_sha256": "2be5717d19e86bdf38e4838d4bd2886a211ba78bfbfe749c458305a3e0ac2dcc",
8
+ "fold": 0,
9
+ "mode": "lora",
10
+ "trainable": {
11
+ "mode": "lora",
12
+ "lora_layers": [
13
+ "time_encoder.0",
14
+ "time_encoder.2",
15
+ "condition_encoder.0",
16
+ "condition_encoder.3",
17
+ "context_mixer.2",
18
+ "down_blocks.0.input_projection",
19
+ "down_blocks.0.context_projection.1",
20
+ "down_blocks.1.input_projection",
21
+ "down_blocks.1.context_projection.1",
22
+ "down_blocks.2.input_projection",
23
+ "down_blocks.2.context_projection.1",
24
+ "down_blocks.3.input_projection",
25
+ "down_blocks.3.context_projection.1",
26
+ "up_blocks.0.input_projection",
27
+ "up_blocks.0.context_projection.1",
28
+ "up_blocks.1.input_projection",
29
+ "up_blocks.1.context_projection.1",
30
+ "up_blocks.2.input_projection",
31
+ "up_blocks.2.context_projection.1",
32
+ "output_trunk.0",
33
+ "value_head",
34
+ "active_head"
35
+ ],
36
+ "lora_rank": 16,
37
+ "lora_alpha": 16.0,
38
+ "n_trainable": 1296224,
39
+ "n_total_base": 54185184,
40
+ "trainable_tensors": 44
41
+ },
42
+ "lr": 0.0005,
43
+ "warmup": 200,
44
+ "batch_size": 256,
45
+ "ema_decay": 0.999,
46
+ "max_steps": 3000,
47
+ "steps_run": 3000,
48
+ "eval_every": 250,
49
+ "patience": 8,
50
+ "train_subset": null,
51
+ "train_donors_file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/fewshot_n5/draw2/train_donors.txt",
52
+ "fixed_steps": 3000,
53
+ "selected_step": 3000,
54
+ "selected_inner_val_loss": NaN,
55
+ "pretrained_inner_val_loss": NaN,
56
+ "train_rows": [
57
+ "HS25",
58
+ "HS44",
59
+ "HS48",
60
+ "HS55",
61
+ "HS91"
62
+ ],
63
+ "inner_val_rows": [],
64
+ "test_rows_never_loaded_for_training": [
65
+ "HS1",
66
+ "HS2",
67
+ "HS3",
68
+ "HS4",
69
+ "HS6",
70
+ "HS7",
71
+ "HS8",
72
+ "HS9",
73
+ "HS10",
74
+ "HS11",
75
+ "HS12",
76
+ "HS13",
77
+ "HS14",
78
+ "HS15",
79
+ "HS16",
80
+ "HS17",
81
+ "HS18",
82
+ "HS19",
83
+ "HS20",
84
+ "HS21",
85
+ "HS23",
86
+ "HS24",
87
+ "HS26",
88
+ "HS27",
89
+ "HS28",
90
+ "HS29",
91
+ "HS30",
92
+ "HS31",
93
+ "HS32",
94
+ "HS34",
95
+ "HS35",
96
+ "HS36",
97
+ "HS37",
98
+ "HS38",
99
+ "HS39",
100
+ "HS40",
101
+ "HS41",
102
+ "HS42",
103
+ "HS43",
104
+ "HS45",
105
+ "HS46",
106
+ "HS47",
107
+ "HS49",
108
+ "HS50",
109
+ "HS51",
110
+ "HS52",
111
+ "HS53",
112
+ "HS54",
113
+ "HS56",
114
+ "HS57",
115
+ "HS58",
116
+ "HS59",
117
+ "HS60",
118
+ "HS61",
119
+ "HS62",
120
+ "HS63",
121
+ "HS64",
122
+ "HS65",
123
+ "HS66",
124
+ "HS67",
125
+ "HS68",
126
+ "HS69",
127
+ "HS70",
128
+ "HS71",
129
+ "HS72",
130
+ "HS73",
131
+ "HS74",
132
+ "HS75",
133
+ "HS76",
134
+ "HS77",
135
+ "HS78",
136
+ "HS79",
137
+ "HS80",
138
+ "HS81",
139
+ "HS82",
140
+ "HS83",
141
+ "HS84",
142
+ "HS85",
143
+ "HS86",
144
+ "HS87",
145
+ "HS88",
146
+ "HS89",
147
+ "HS90",
148
+ "HS92",
149
+ "HS93",
150
+ "HS94",
151
+ "HS95",
152
+ "HS96",
153
+ "HS97",
154
+ "HS98",
155
+ "HS100",
156
+ "HS101",
157
+ "HS102",
158
+ "HS103",
159
+ "HS104",
160
+ "HS105",
161
+ "HS106",
162
+ "HS107",
163
+ "HS108",
164
+ "HS109",
165
+ "HS110",
166
+ "HS111"
167
+ ],
168
+ "max_abs_weight_change": 0.3761973977088928,
169
+ "n_tensors_changed": 22,
170
+ "seed": 20260927,
171
+ "wall_seconds": 119.0,
172
+ "written_utc": "2026-09-28T04:43:32.621713+00:00",
173
+ "checkpoint_sha256": "c4ab873650c99eb6ddf014c4f52ab2203cf8458f84d5aa67ca7219251c35a686",
174
+ "reload_forward_max_abs_diff": 0.0
175
+ }
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw3/lora/RUN.json ADDED
@@ -0,0 +1,175 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc_sdd.ft_intradataset.run.v1",
3
+ "source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
4
+ "source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
5
+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro",
6
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/conditions_raw_fixed.npz",
7
+ "condition_npz_sha256": "2be5717d19e86bdf38e4838d4bd2886a211ba78bfbfe749c458305a3e0ac2dcc",
8
+ "fold": 0,
9
+ "mode": "lora",
10
+ "trainable": {
11
+ "mode": "lora",
12
+ "lora_layers": [
13
+ "time_encoder.0",
14
+ "time_encoder.2",
15
+ "condition_encoder.0",
16
+ "condition_encoder.3",
17
+ "context_mixer.2",
18
+ "down_blocks.0.input_projection",
19
+ "down_blocks.0.context_projection.1",
20
+ "down_blocks.1.input_projection",
21
+ "down_blocks.1.context_projection.1",
22
+ "down_blocks.2.input_projection",
23
+ "down_blocks.2.context_projection.1",
24
+ "down_blocks.3.input_projection",
25
+ "down_blocks.3.context_projection.1",
26
+ "up_blocks.0.input_projection",
27
+ "up_blocks.0.context_projection.1",
28
+ "up_blocks.1.input_projection",
29
+ "up_blocks.1.context_projection.1",
30
+ "up_blocks.2.input_projection",
31
+ "up_blocks.2.context_projection.1",
32
+ "output_trunk.0",
33
+ "value_head",
34
+ "active_head"
35
+ ],
36
+ "lora_rank": 16,
37
+ "lora_alpha": 16.0,
38
+ "n_trainable": 1296224,
39
+ "n_total_base": 54185184,
40
+ "trainable_tensors": 44
41
+ },
42
+ "lr": 0.0005,
43
+ "warmup": 200,
44
+ "batch_size": 256,
45
+ "ema_decay": 0.999,
46
+ "max_steps": 3000,
47
+ "steps_run": 3000,
48
+ "eval_every": 250,
49
+ "patience": 8,
50
+ "train_subset": null,
51
+ "train_donors_file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/fewshot_n5/draw3/train_donors.txt",
52
+ "fixed_steps": 3000,
53
+ "selected_step": 3000,
54
+ "selected_inner_val_loss": NaN,
55
+ "pretrained_inner_val_loss": NaN,
56
+ "train_rows": [
57
+ "HS34",
58
+ "HS84",
59
+ "HS88",
60
+ "HS91",
61
+ "HS105"
62
+ ],
63
+ "inner_val_rows": [],
64
+ "test_rows_never_loaded_for_training": [
65
+ "HS1",
66
+ "HS2",
67
+ "HS3",
68
+ "HS4",
69
+ "HS6",
70
+ "HS7",
71
+ "HS8",
72
+ "HS9",
73
+ "HS10",
74
+ "HS11",
75
+ "HS12",
76
+ "HS13",
77
+ "HS14",
78
+ "HS15",
79
+ "HS16",
80
+ "HS17",
81
+ "HS18",
82
+ "HS19",
83
+ "HS20",
84
+ "HS21",
85
+ "HS23",
86
+ "HS24",
87
+ "HS25",
88
+ "HS26",
89
+ "HS27",
90
+ "HS28",
91
+ "HS29",
92
+ "HS30",
93
+ "HS31",
94
+ "HS32",
95
+ "HS35",
96
+ "HS36",
97
+ "HS37",
98
+ "HS38",
99
+ "HS39",
100
+ "HS40",
101
+ "HS41",
102
+ "HS42",
103
+ "HS43",
104
+ "HS44",
105
+ "HS45",
106
+ "HS46",
107
+ "HS47",
108
+ "HS48",
109
+ "HS49",
110
+ "HS50",
111
+ "HS51",
112
+ "HS52",
113
+ "HS53",
114
+ "HS54",
115
+ "HS55",
116
+ "HS56",
117
+ "HS57",
118
+ "HS58",
119
+ "HS59",
120
+ "HS60",
121
+ "HS61",
122
+ "HS62",
123
+ "HS63",
124
+ "HS64",
125
+ "HS65",
126
+ "HS66",
127
+ "HS67",
128
+ "HS68",
129
+ "HS69",
130
+ "HS70",
131
+ "HS71",
132
+ "HS72",
133
+ "HS73",
134
+ "HS74",
135
+ "HS75",
136
+ "HS76",
137
+ "HS77",
138
+ "HS78",
139
+ "HS79",
140
+ "HS80",
141
+ "HS81",
142
+ "HS82",
143
+ "HS83",
144
+ "HS85",
145
+ "HS86",
146
+ "HS87",
147
+ "HS89",
148
+ "HS90",
149
+ "HS92",
150
+ "HS93",
151
+ "HS94",
152
+ "HS95",
153
+ "HS96",
154
+ "HS97",
155
+ "HS98",
156
+ "HS100",
157
+ "HS101",
158
+ "HS102",
159
+ "HS103",
160
+ "HS104",
161
+ "HS106",
162
+ "HS107",
163
+ "HS108",
164
+ "HS109",
165
+ "HS110",
166
+ "HS111"
167
+ ],
168
+ "max_abs_weight_change": 0.3650042712688446,
169
+ "n_tensors_changed": 22,
170
+ "seed": 20260927,
171
+ "wall_seconds": 104.9,
172
+ "written_utc": "2026-09-28T04:58:26.120447+00:00",
173
+ "checkpoint_sha256": "275c491bfeeae93ce67bcaa8462da3a9cf28743c570322bd55cd5907c3c9043c",
174
+ "reload_forward_max_abs_diff": 0.0
175
+ }