Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw4/cat.csv

@@ -0,0 +1,301 @@
+dataset,design,unit,arm,predictor,celltype,k,k_eff,cat_same_sign,cat_any_sign,chance_same_sign,chance_any_sign,G_both,pred_defined,n_tested_obs,n_tested_pred
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+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,Monocyte,200,200,0.39,0.39,0.019573302016050106,0.03914660403210021,5109,True,5109,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,Monocyte,500,500,0.376,0.376,0.048933255040125266,0.09786651008025053,5109,True,5109,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,NK cell,10,10,0.1,0.1,0.0018712574850299401,0.0037425149700598802,2672,True,4929,2676
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,NK cell,20,20,0.05,0.05,0.0037425149700598802,0.0074850299401197605,2672,True,4929,2676
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,NK cell,50,50,0.04,0.04,0.0093562874251497,0.0187125748502994,2672,True,4929,2676
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,NK cell,100,100,0.04,0.05,0.0187125748502994,0.0374251497005988,2672,True,4929,2676
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,NK cell,200,200,0.045,0.06,0.0374251497005988,0.0748502994011976,2672,True,4929,2676
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,NK cell,500,500,0.092,0.116,0.09356287425149701,0.18712574850299402,2672,True,4929,2676
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,NK cell,10,10,0.0,0.0,0.0010144045445323595,0.002028809089064719,4929,True,4929,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,NK cell,20,20,0.05,0.05,0.002028809089064719,0.004057618178129438,4929,True,4929,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,NK cell,50,50,0.26,0.26,0.005072022722661797,0.010144045445323595,4929,True,4929,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,NK cell,100,100,0.26,0.26,0.010144045445323595,0.02028809089064719,4929,True,4929,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,NK cell,200,200,0.3,0.3,0.02028809089064719,0.04057618178129438,4929,True,4929,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,NK cell,500,500,0.33,0.33,0.050720227226617974,0.10144045445323595,4929,True,4929,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,DC,10,10,0.0,0.0,0.002402691013935608,0.004805382027871216,2081,True,4638,2082
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,DC,20,20,0.0,0.0,0.004805382027871216,0.009610764055742432,2081,True,4638,2082
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,DC,50,50,0.0,0.0,0.012013455069678039,0.024026910139356077,2081,True,4638,2082
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,DC,100,100,0.06,0.06,0.024026910139356077,0.048053820278712155,2081,True,4638,2082
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,DC,200,200,0.05,0.055,0.048053820278712155,0.09610764055742431,2081,True,4638,2082
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,DC,500,500,0.092,0.136,0.12013455069678039,0.24026910139356078,2081,True,4638,2082
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,DC,10,10,0.1,0.1,0.0010780508840017248,0.0021561017680034496,4638,True,4638,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,DC,20,20,0.05,0.05,0.0021561017680034496,0.004312203536006899,4638,True,4638,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,DC,50,50,0.08,0.08,0.005390254420008625,0.01078050884001725,4638,True,4638,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,DC,100,100,0.15,0.15,0.01078050884001725,0.0215610176800345,4638,True,4638,5318
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@6400d82f,DC,200,200,0.2,0.2,0.0215610176800345,0.043122035360069,4638,True,4638,5318
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+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,T cell,10,10,0.0,0.0,0.0013865779256794233,0.0027731558513588465,3606,True,5182,3610
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,T cell,20,20,0.0,0.0,0.0027731558513588465,0.005546311702717693,3606,True,5182,3610
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+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@8f98decb,T cell,50,50,0.14,0.14,0.004855311711011847,0.009710623422023694,5149,True,5182,5452
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+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,B cell,500,500,0.054,0.094,0.09897070467141726,0.19794140934283452,2526,True,4807,2529
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+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@8f98decb,B cell,50,50,0.14,0.16,0.0052279381012128815,0.010455876202425763,4782,True,4807,5452
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@8f98decb,B cell,100,100,0.19,0.2,0.010455876202425763,0.020911752404851526,4782,True,4807,5452
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@8f98decb,B cell,200,200,0.175,0.18,0.020911752404851526,0.04182350480970305,4782,True,4807,5452
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@8f98decb,B cell,500,500,0.254,0.268,0.05227938101212882,0.10455876202425764,4782,True,4807,5452
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+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,Monocyte,20,20,0.05,0.05,0.0031377470975839346,0.006275494195167869,3187,True,5109,3194
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,Monocyte,50,50,0.06,0.06,0.007844367743959836,0.015688735487919672,3187,True,5109,3194
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,Monocyte,100,100,0.07,0.07,0.015688735487919672,0.031377470975839344,3187,True,5109,3194
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,Monocyte,200,200,0.09,0.095,0.031377470975839344,0.06275494195167869,3187,True,5109,3194
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,Monocyte,500,500,0.154,0.164,0.07844367743959837,0.15688735487919675,3187,True,5109,3194
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+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@8f98decb,Monocyte,50,50,0.24,0.24,0.004922228785193936,0.009844457570387872,5079,True,5109,5452
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@8f98decb,Monocyte,100,100,0.32,0.32,0.009844457570387872,0.019688915140775743,5079,True,5109,5452
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@8f98decb,Monocyte,200,200,0.315,0.315,0.019688915140775743,0.039377830281551486,5079,True,5109,5452
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@8f98decb,Monocyte,500,500,0.326,0.332,0.049222287851939356,0.09844457570387871,5079,True,5109,5452
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+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@1339e763,NK cell,200,200,0.235,0.235,0.020412329046744233,0.04082465809348847,4899,True,4929,5452
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@1339e763,NK cell,500,500,0.236,0.242,0.05103082261686059,0.10206164523372117,4899,True,4929,5452
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,DC,10,10,0.0,0.0,0.010570824524312896,0.021141649048625793,473,True,4638,474
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,DC,20,20,0.0,0.0,0.021141649048625793,0.042283298097251586,473,True,4638,474
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,DC,50,50,0.04,0.04,0.052854122621564484,0.10570824524312897,473,True,4638,474
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,DC,100,100,0.05,0.06,0.10570824524312897,0.21141649048625794,473,True,4638,474
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,DC,200,200,0.075,0.09,0.21141649048625794,0.42283298097251587,473,True,4638,474
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,DC,500,500,0.1,0.172,0.5,1.0,473,True,4638,474
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@1339e763,DC,10,10,0.0,0.0,0.0010838933448948623,0.0021677866897897246,4613,True,4638,5452
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@1339e763,DC,20,20,0.15,0.15,0.0021677866897897246,0.004335573379579449,4613,True,4638,5452
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@1339e763,DC,50,50,0.2,0.2,0.005419466724474312,0.010838933448948623,4613,True,4638,5452
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@1339e763,DC,100,100,0.17,0.17,0.010838933448948623,0.021677866897897247,4613,True,4638,5452
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@1339e763,DC,200,200,0.17,0.175,0.021677866897897247,0.04335573379579449,4613,True,4638,5452
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@1339e763,DC,500,500,0.262,0.274,0.05419466724474312,0.10838933448948623,4613,True,4638,5452

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw4/ceiling.csv

@@ -0,0 +1,51 @@
+dataset,design,unit,predictor,arm,celltype,n_genes,pearson_mean,pearson_sd,spearman_mean,spearman_sd,pearson_s20260926,spearman_s20260926,pearson_s20260927,spearman_s20260927,pearson_s20260928,spearman_s20260928,pearson_s20260929,spearman_s20260929,pearson_s20260930,spearman_s20260930,sb_reliability_pearson,noise_free_ceiling_pearson,sb_reliability_spearman,noise_free_ceiling_spearman,min_n_case_donors_A,min_n_control_donors_A,min_n_case_donors_B,min_n_control_donors_B,mean_n_cells_A,mean_n_cells_B,condition_sha256
+giroux2022,fewshot,fewshot_n5/draw4,split_half_A_vs_B,,T cell,2870.0,0.9738104775397259,0.000670601784068533,0.9327529931658811,0.0012359082150939092,0.9742745956589215,0.9325373373309593,0.9735155965756048,0.9316903078642574,0.9747150624786508,0.9336990265026133,0.9734990057784624,0.9343305073429682,0.97304812720699,0.9315077867886069,0.986731490810142,0.9933435915181322,0.9652066212951675,0.9824492970607529,5.0,5.0,5.0,5.0,27937.0,27940.0,
+giroux2022,fewshot,fewshot_n5/draw4,split_half_A_vs_B,,B cell,3061.0,0.7657695100112841,0.005115755800065672,0.5384149477690181,0.009579918868427293,0.7715973180273569,0.5471873885344131,0.7706961497643632,0.5464272229115844,0.7639580210147254,0.5305104675201359,0.7600372856257915,0.5260996470376441,0.7625587756241832,0.5418500128413126,0.8673493405222412,0.9313159187527298,0.6999606296725313,0.8366364979323645,5.0,5.0,5.0,5.0,2443.0,2447.0,
+giroux2022,fewshot,fewshot_n5/draw4,split_half_A_vs_B,,Monocyte,3017.0,0.9287106318304806,0.00268408649638023,0.7476310561533362,0.009319400764428387,0.928400293339677,0.7415085396550554,0.9324993791590318,0.7596892054337716,0.9262499233515323,0.7385426881602083,0.926227772817108,0.743004503170207,0.9301757904850539,0.7554103443474395,0.9630378103417926,0.9813448987699445,0.8555936946999865,0.924983078061424,5.0,5.0,5.0,5.0,10644.0,10650.0,
+giroux2022,fewshot,fewshot_n5/draw4,split_half_A_vs_B,,NK cell,2940.0,0.8730399035624987,0.0039798314090621284,0.6753958696688115,0.006609920276608759,0.866741691495774,0.6641156872034344,0.8775318959585817,0.6787074056838158,0.8724277746421802,0.6787858423986847,0.8739236132012708,0.6749850810326313,0.8745745425146878,0.6803853320254912,0.9322170893444263,0.9655138990943767,0.806252279710254,0.897915519250143,5.0,5.0,5.0,5.0,6285.0,6294.0,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_raw,zs_raw,T cell,2870.0,0.639563368586921,0.0030431774274887096,0.5260380473262896,0.0027940905459817303,0.6432312722257088,0.5303982480463791,0.6397069683583796,0.5268612340652069,0.6349192978905691,0.5230023583132984,0.6390698169022218,0.5248718154780908,0.6408894875577257,0.5250565807284724,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_raw,zs_raw,B cell,3061.0,0.2367966764800594,0.016480859094296477,0.041146188460644405,0.018833271611174592,0.2354629213558636,0.03904561648783078,0.23253599211929876,0.03242642199918684,0.23004630015924196,0.04410883468943296,0.2212345759587954,0.019592954462942964,0.26470359280709727,0.0705571146638285,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_raw,zs_raw,Monocyte,3017.0,0.31785846777938476,0.010128443283080534,0.11963307150853641,0.01315750753147711,0.3025825960974177,0.09989038126204566,0.31899977747378244,0.11894207041731551,0.33062678526495326,0.13683342756633643,0.3209626813607536,0.12200777610514393,0.31612049870001685,0.12049170219184056,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_raw,zs_raw,NK cell,2940.0,0.43509064897352295,0.0053774243539879574,0.23087142393125482,0.007756743571595259,0.42856805149716637,0.22116194519823174,0.43859093584768055,0.23648524196698287,0.44050105089214714,0.23440723771185434,0.43010539336974984,0.22400219849758407,0.4376878132608707,0.23830049628162117,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_pseudo,zs_pseudo,T cell,2870.0,0.5921495958966053,0.0022443635278209615,0.415760521530591,0.002843482998206448,0.5929784986766992,0.417704657086044,0.5912694945578859,0.41672883792067267,0.5902616535143471,0.41666267645181465,0.5905459823314839,0.41072793520767753,0.5956923504026106,0.41697850098674594,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_pseudo,zs_pseudo,B cell,3061.0,0.3039622855237232,0.010960829497680761,0.11242212444597269,0.011026938841388653,0.3102748424261717,0.12019182965761939,0.3169537664925926,0.12799156471612327,0.28760950807488106,0.10396790692079351,0.3022004024821302,0.10416008821785161,0.3027729081428404,0.10579923271747566,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_pseudo,zs_pseudo,Monocyte,3017.0,0.41360693069175286,0.009630558522888806,0.168353064868143,0.008099911897593553,0.39889403675491086,0.15432109809125044,0.4192230193101196,0.17261355288561092,0.4245581340916616,0.17482362152842734,0.41349602769312155,0.169816050087191,0.4118634356089505,0.1701910017482352,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_pseudo,zs_pseudo,NK cell,2940.0,0.3738697756932548,0.005520809927397518,0.18854003212780426,0.007116502227521016,0.3803298054935498,0.20025611658653342,0.37148272867240656,0.1836355361260029,0.3779894779679323,0.18968689388019172,0.36631255181259603,0.18252685237820968,0.37323431451978933,0.1865947616680835,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_cal,zs_cal,T cell,2870.0,0.5858493927762204,0.0019195448119748806,0.39993604788992493,0.0027847566940983385,0.585232569330659,0.39989275714020195,0.5869345342859955,0.4023582391037473,0.5843573579973609,0.40000964598172967,0.5840775655001603,0.39538280268820775,0.5886449367669261,0.4020367945357379,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_cal,zs_cal,B cell,3061.0,0.2892026996828123,0.009983338654487414,0.10710200510357362,0.008469807908939305,0.2882034869732703,0.10531074379318904,0.2883093196926483,0.09885478150622432,0.27428631708065304,0.10079728954625866,0.2935388735779219,0.11066786267440215,0.3016755010895679,0.11987934799779396,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_cal,zs_cal,Monocyte,3017.0,0.3794468197388154,0.010599989612569001,0.23265620539561022,0.013691667205813225,0.3647090473764252,0.2150607244223344,0.3799645965927785,0.23597369627885478,0.39370300268923897,0.251572049649133,0.38321882397095264,0.2358452860123524,0.37563862806468173,0.22482927061537653,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_cal,zs_cal,NK cell,2940.0,0.4595657083188927,0.0052366884178406065,0.236690678532065,0.010448432526409087,0.455150181696669,0.22277234810896193,0.45763249149003715,0.23399517994993457,0.46865007928887487,0.2503718379251729,0.4578898403418892,0.24285908398818093,0.4585059487769934,0.23345494268807465,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:lora5,lora5,T cell,2870.0,0.5834383782696279,0.0018579502659043334,0.39573831099541745,0.0029860062293760974,0.5859682806216676,0.39928931001177626,0.5835280037310052,0.39871369013111974,0.5816892308739213,0.3935394939753994,0.5844105225058206,0.39361794027178465,0.5815958536157242,0.39353112058700734,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:lora5,lora5,B cell,3061.0,0.2600900155706009,0.008349041915637895,0.0956092521297158,0.009729794587395875,0.26750729197301004,0.10391820722951443,0.26809709123392,0.10477480442356844,0.2503149669759487,0.09825774881403254,0.252356806824775,0.08838917102945762,0.26217392084535096,0.08270632915200594,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:lora5,lora5,Monocyte,3017.0,0.38025198988096137,0.006429172234071915,0.10718977315704903,0.008307354068356664,0.3718241190771742,0.0949905595401365,0.3795495992811494,0.10431192047708042,0.3898652895924335,0.1175370274623925,0.37920969945025895,0.10896542320146678,0.3808112420037907,0.11014393510416898,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:lora5,lora5,NK cell,2940.0,0.37819429711185854,0.003580819967014033,0.18791346660031275,0.00854482186896514,0.37505304872061906,0.18574632828308024,0.3816439908873556,0.19548286589037966,0.3757697413339319,0.17840815733283175,0.3759809744930684,0.18186266941155163,0.3825237301243178,0.19806731208372036,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:scsemi5,scsemi5,T cell,2870.0,0.5508841267003904,0.001329630821128673,0.45212318695834197,0.0030053611939397256,0.5519712505504073,0.45446677312239553,0.5494261645841834,0.4508858577737309,0.551770945444832,0.45606773176667115,0.5518187418595316,0.44896902899287494,0.5494335310629982,0.45022654313603744,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:scsemi5,scsemi5,B cell,3061.0,0.32703568593476484,0.005941337305224106,0.15549602840607707,0.0076692566184179585,0.3190475666002116,0.15006431214309748,0.3289962729830121,0.1615386024591965,0.33266624448758353,0.16225606002751566,0.33180374718714406,0.15875287124424378,0.3226645984158729,0.14486829615633187,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:scsemi5,scsemi5,Monocyte,3017.0,0.5049508864631014,0.0032186805332295645,0.25649049862860496,0.008314388628002198,0.5077010451750709,0.2692600774421513,0.5080079244479344,0.2576804139794943,0.500955598881969,0.2527421832870934,0.5021838927949095,0.24659668214254224,0.5059059710156233,0.25617313629174376,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:scsemi5,scsemi5,NK cell,2940.0,0.39976500518155134,0.00578991481420152,0.25634377771813527,0.011498647406564592,0.39321349648935794,0.24433569482914813,0.4078164182710984,0.2737378344602864,0.40112111216418955,0.25426233900879547,0.39514110300615857,0.24867752890477843,0.40153289597695235,0.2607054913876678,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_raw.npz@ac755a41,,T cell,2870.0,0.7298375729010628,0.0011955222591029393,0.6227707844328042,0.0026993848430871374,0.7282774850888862,0.6200094670806088,0.7315035181016929,0.6263890630707444,0.7303812552461701,0.6236695180777836,0.7295383477961659,0.6236366321520344,0.7294872582723987,0.6201492417828497,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_raw.npz@ac755a41,,B cell,3061.0,0.5327271262599732,0.015183840596420601,0.33503935296537113,0.019710908235110323,0.5184083889700377,0.31744639794842255,0.5265473728816021,0.32865287839989904,0.5300347197946912,0.34075634785320325,0.5301306305602178,0.3217614404860368,0.5585145190933176,0.36657970013929425,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_raw.npz@ac755a41,,Monocyte,3017.0,0.5468345153365307,0.012786925550248834,0.3275804806465347,0.019550801375077125,0.5271643083302973,0.29374110970113043,0.550400874567362,0.33537913209561143,0.5601067300382768,0.3423328236719306,0.5543423406659435,0.33778909660145917,0.5421583230807742,0.3286602411625421,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_raw.npz@ac755a41,,NK cell,2940.0,0.6345078052095152,0.0016825962288481444,0.44970720759893784,0.004674589299416493,0.634426775486758,0.44271443095413837,0.633467296693882,0.447261337489378,0.6346500904485413,0.45175154239801196,0.6327911244796128,0.4541145414624807,0.6372037389387819,0.45269418569068015,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_pseudo.npz@6400d82f,,T cell,2870.0,0.8399425641416369,0.0029126748362597516,0.7951424185141005,0.003311221409235111,0.8383308056030144,0.7919021528455162,0.8429943996769869,0.797379068369186,0.8401017608811246,0.7961864770365255,0.8359243055776837,0.7914300467901342,0.8423615489693754,0.7988143475291408,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_pseudo.npz@6400d82f,,B cell,3061.0,0.6453925600042159,0.012077317500451221,0.4387343009184864,0.01663481530095362,0.6283884689724519,0.41755718448856466,0.6455494815435329,0.4354874283229637,0.6473239488919142,0.4470230482680763,0.6433817614511899,0.4318189391785872,0.662319139161991,0.46178490433423997,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_pseudo.npz@6400d82f,,Monocyte,3017.0,0.6379199624687286,0.01413141041220825,0.3993306663099888,0.02322999693825922,0.6151473166737427,0.35929773907834023,0.6377318006409081,0.40321902876298876,0.6510744256506933,0.4164434869774398,0.6482561882653557,0.41462685550880596,0.637390081112944,0.4030662212223695,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_pseudo.npz@6400d82f,,NK cell,2940.0,0.7363040428898737,0.0017918136561711623,0.5589276547362991,0.0032882967464494825,0.7355133489361622,0.5539319051270761,0.7345984063676009,0.5623772524781467,0.7368029456138415,0.560792819882419,0.7354233646967574,0.5575713570805165,0.739182148835006,0.5599649391133372,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_cal.npz@8f98decb,,T cell,2870.0,0.7272799918026662,0.0018686872899021788,0.6195733528521841,0.003017665596359919,0.7260893028573551,0.6150929772722824,0.7293254487674606,0.6225772195540543,0.7281052699497219,0.6221554279242154,0.7246688147439337,0.6191786711846039,0.7282111226948598,0.618862468325764,,,,,,,,,,,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_cal.npz@8f98decb,,B cell,3061.0,0.564998837084409,0.011037158833079612,0.3490428222222368,0.01488031795877055,0.5530399127066237,0.3316967081828663,0.5644899102305784,0.34866811898342753,0.5607593491660379,0.3520501847107855,0.5636969441935488,0.3411126226797698,0.5830080691252564,0.37168647655433484,,,,,,,,,,,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_cal.npz@8f98decb,,Monocyte,3017.0,0.5877621258973273,0.013373881060326161,0.32924539998674834,0.021089826316398948,0.5663723322801634,0.29320507878873137,0.5902528694310298,0.3390298189387281,0.5994566467296418,0.34269807911883,0.598035269991333,0.3434427685004236,0.5846935110544688,0.32785125458702874,,,,,,,,,,,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_cal.npz@8f98decb,,NK cell,2940.0,0.6523583334635209,0.002333688089251713,0.4488807942826149,0.0012668581615793537,0.6553069236058889,0.44804165728863454,0.6497876536230947,0.4484165167305988,0.6513305194948398,0.44873286549226193,0.6510686285563134,0.4510939020333274,0.6542979420374673,0.44811902986825214,,,,,,,,,,,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_raw.npz@1339e763,,T cell,2870.0,0.7298375729010628,0.0011955222591029393,0.6227707844328042,0.0026993848430871374,0.7282774850888862,0.6200094670806088,0.7315035181016929,0.6263890630707444,0.7303812552461701,0.6236695180777836,0.7295383477961659,0.6236366321520344,0.7294872582723987,0.6201492417828497,,,,,,,,,,,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_raw.npz@1339e763,,B cell,3061.0,0.5327271262599732,0.015183840596420601,0.33503935296537113,0.019710908235110323,0.5184083889700377,0.31744639794842255,0.5265473728816021,0.32865287839989904,0.5300347197946912,0.34075634785320325,0.5301306305602178,0.3217614404860368,0.5585145190933176,0.36657970013929425,,,,,,,,,,,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_raw.npz@1339e763,,Monocyte,3017.0,0.5468345153365307,0.012786925550248834,0.3275804806465347,0.019550801375077125,0.5271643083302973,0.29374110970113043,0.550400874567362,0.33537913209561143,0.5601067300382768,0.3423328236719306,0.5543423406659435,0.33778909660145917,0.5421583230807742,0.3286602411625421,,,,,,,,,,,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_raw.npz@1339e763,,NK cell,2940.0,0.6345078052095152,0.0016825962288481444,0.44970720759893784,0.004674589299416493,0.634426775486758,0.44271443095413837,0.633467296693882,0.447261337489378,0.6346500904485413,0.45175154239801196,0.6327911244796128,0.4541145414624807,0.6372037389387819,0.45269418569068015,,,,,,,,,,,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f
+giroux2022,fewshot,fewshot_n5/draw4,split_half_A_vs_B,,mean4,,0.8853326307359973,0.0019446705473705197,0.7235487166892616,0.004346713109873896,0.8852534746304324,0.7213372381809655,0.8885607553643954,0.7291285354733573,0.8843376953717722,0.7203845061454105,0.8834219193556582,0.7196049346458626,0.8850893089577287,0.7272883690007126,0.9373339327546505,0.9678795770337959,0.8317533063444849,0.9104960980761712,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_raw,zs_raw,mean4,,0.40732729045497196,0.005081259347188821,0.22942218280668128,0.007141421243835393,0.40246121029403914,0.22262404774862182,0.40745841844978536,0.22867874211217304,0.4090233585517279,0.23458796457023054,0.40284311689788016,0.22261868613594044,0.4148503480814276,0.23860147346644067,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_pseudo,zs_pseudo,mean4,,0.420897146951334,0.0023990654645754087,0.22126893574312773,0.0032019712155517675,0.42061929583783286,0.2231184253553618,0.4247322522582512,0.22524237291210245,0.4201046934122055,0.2212852746953068,0.41813874107983295,0.21680773147273247,0.4208907521685477,0.21989087428013507,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:zs_cal,zs_cal,mean4,,0.4285161551291852,0.0030893099144928484,0.24409623423029342,0.005475743235614638,0.4233238213442559,0.23575914336617182,0.42821023551536486,0.24279547420969025,0.43024918926403194,0.25068770577557353,0.429681275847731,0.2461887588407858,0.4311162536745423,0.24505008895924574,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:lora5,lora5,mean4,,0.4004936702082621,0.0020374258751170208,0.19661270072062378,0.0027405394224662228,0.4000881850981177,0.19598610126612687,0.4032046712833576,0.20082082023053707,0.39940980719405883,0.19693560689616404,0.3979895008184807,0.1932088009785652,0.4017761866472959,0.19611217423172567,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,generated:scsemi5,scsemi5,mean4,,0.445658926069952,0.0020798503891531254,0.2801133729277898,0.0038586419664691767,0.4429833397037619,0.2795317143841981,0.4485616950715571,0.285960677168177,0.44662847524464355,0.28133207852251896,0.4452368712119359,0.2757490278211098,0.4448842491178617,0.2779933667429452,,,,,,,,,,,
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_raw.npz@ac755a41,,mean4,,0.6109767549267705,0.0055325413099564826,0.433774456410912,0.009178355998690711,0.6020692394689948,0.418477851421075,0.6104797655611347,0.4344206027639082,0.6137931988819199,0.43962755800023234,0.611700610875485,0.43432542767550275,0.616840959846318,0.4420208421938415,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:all_usable_pseudo.npz@6400d82f,,mean4,,0.7148897823761138,0.006263792827788028,0.5480337601197187,0.010206634729662243,0.7043449850463428,0.5306722453848743,0.7152185220572571,0.5496156944833213,0.7188257702593934,0.5551114580411152,0.7157464049977467,0.548861799639511,0.7203132295198291,0.5559076030497718,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_cal.npz@8f98decb,,mean4,,0.6330998220619809,0.004669805195282887,0.436685592335946,0.008294073156973591,0.6252021178625078,0.42200910538312864,0.6334639705130409,0.4396729185517022,0.6349129463350603,0.4414091393115232,0.6343674143712823,0.43870699109953115,0.637552661228013,0.44162980733384494,,,,,,,,,,,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb
+giroux2022,fewshot,fewshot_n5/draw4,broadcast:test_raw.npz@1339e763,,mean4,,0.6109767549267705,0.0055325413099564826,0.433774456410912,0.009178355998690711,0.6020692394689948,0.418477851421075,0.6104797655611347,0.4344206027639082,0.6137931988819199,0.43962755800023234,0.611700610875485,0.43432542767550275,0.616840959846318,0.4420208421938415,,,,,,,,,,,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw4/contrast.csv

@@ -0,0 +1,51 @@
+dataset,design,unit,arm,celltype,statistic,label,n_genes,pearson_r_generated,spearman_r_generated,pearson_r_broadcast,spearman_r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,condition,condition_sha256,pearson_r_generated_scorer,pearson_r_broadcast_scorer,partial_r_generated_given_broadcast_scorer,r_generated_vs_broadcast_scorer
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,T cell,mean_cp10k,"Zero-shot, real bulk",2870.0,0.6439482424024318,0.5337272377953065,0.7344048019011988,0.6300746162061259,0.3589876257681595,0.6153038119647339,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.6439482424024318,0.7344048019011988,0.3589876257681595,0.6153038119647339
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,T cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",2870.0,0.46754798841588197,0.46269616461187263,0.6900634955326531,0.6177965551927042,0.22656206943330023,0.4674857380075974,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.4675479884158819,0.6900634955326531,0.2265620694333002,0.4674857380075974
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,B cell,mean_cp10k,"Zero-shot, real bulk",3061.0,0.2420923105419077,0.031954305976900355,0.565884313340693,0.36606520079361793,0.07399906102884377,0.3258825073030159,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.2420923105419077,0.565884313340693,0.0739990610288437,0.3258825073030159
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,B cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3061.0,0.08590418942628969,0.06640361095611162,0.4704332503129004,0.3860828187239137,-0.014879596474859012,0.2098958380612745,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.0859041894262896,0.4704332503129004,-0.014879596474859,0.2098958380612745
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,Monocyte,mean_cp10k,"Zero-shot, real bulk",3017.0,0.32328130604455296,0.12346226463992319,0.5561945453231222,0.34044857618667607,0.17273759985499176,0.33836128905394164,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.3232813060445529,0.5561945453231222,0.1727375998549917,0.3383612890539416
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3017.0,0.15748379312640134,0.14711749705529872,0.6573550923248582,0.5424548318382237,0.010170585340335554,0.22822018299149768,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.1574837931264013,0.6573550923248582,0.0101705853403355,0.2282201829914976
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,NK cell,mean_cp10k,"Zero-shot, real bulk",2940.0,0.45224955292772284,0.25083220414322444,0.6558646674649503,0.4812337365125405,0.25173997328920844,0.4276317640742488,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.4522495529277228,0.6558646674649503,0.2517399732892084,0.4276317640742488
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,NK cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",2940.0,0.2711863368796496,0.2462428150526702,0.5646910960578172,0.46421890108816055,0.16704527722336068,0.2434448084380009,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.2711863368796496,0.5646910960578172,0.1670452772233606,0.2434448084380009
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,T cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",2870.0,0.5947840488036147,0.4207575298741986,0.8448771637217954,0.8068558048514903,0.22630665185612447,0.5880944148649991,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.5947840488036147,0.8448771637217954,0.2263066518561244,0.5880944148649991
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,T cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",2870.0,0.4087975423336602,0.3809098214375285,0.8533101905943861,0.8041854138746736,0.10070644025755499,0.4233229290101057,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.4087975423336602,0.8533101905943861,0.1007064402575549,0.4233229290101057
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,B cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3061.0,0.316720588164369,0.11767353489043726,0.6846270709615006,0.4785436998823389,0.20012523965400125,0.25669189552072685,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.316720588164369,0.6846270709615006,0.2001252396540012,0.2566918955207268
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,B cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3061.0,0.11949369287132211,0.11365371369364738,0.6119672180348226,0.5167497815462252,0.0678526614127945,0.1080851159853683,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.1194936928713221,0.6119672180348226,0.0678526614127945,0.1080851159853683
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,Monocyte,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3017.0,0.41926772403723805,0.1659735172238615,0.650033159114215,0.4194272972200654,0.18940340600738728,0.44691998729565374,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.419267724037238,0.650033159114215,0.1894034060073872,0.4469199872956537
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3017.0,0.19828627453130585,0.16490289348091264,0.7426923774889226,0.6492038525033371,0.06171022333519478,0.21261548904078453,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.1982862745313058,0.7426923774889226,0.0617102233351947,0.2126154890407845
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,NK cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",2940.0,0.3833541463584062,0.19764007850850518,0.7599207302903567,0.6002443001639781,0.2423242886583946,0.3072120083356119,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.3833541463584062,0.7599207302903567,0.2423242886583946,0.3072120083356119
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,NK cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",2940.0,0.15147447041614506,0.15320246542987964,0.6910208413265133,0.6000220391944586,0.08734169284000827,0.12859970603724521,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.151474470416145,0.6910208413265133,0.0873416928400082,0.1285997060372452
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,T cell,mean_cp10k,Zero-shot + calibration,2870.0,0.5879548613972626,0.40312536482950734,0.7311052089589322,0.6260464885268768,0.2750413842304384,0.59859623942702,test_cal.npz@8f98decb,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb,0.5879548613972626,0.7311052089589322,0.2750413842304384,0.59859623942702
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,T cell,pseudobulk_log1p_cpm,Zero-shot + calibration,2870.0,0.40057521358320747,0.3672502374894265,0.6784996730004811,0.614641244906803,0.1726672819575028,0.420796517781498,test_cal.npz@8f98decb,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb,0.4005752135832074,0.6784996730004811,0.1726672819575028,0.420796517781498
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,B cell,mean_cp10k,Zero-shot + calibration,3061.0,0.30665191672523756,0.11359689430043571,0.6012059995067673,0.3810614071326817,0.19846243591327525,0.25499473192904704,test_cal.npz@8f98decb,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb,0.3066519167252375,0.6012059995067673,0.1984624359132752,0.254994731929047
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,B cell,pseudobulk_log1p_cpm,Zero-shot + calibration,3061.0,0.0868617248076267,0.08300912099907472,0.4687745993414683,0.3855255957539683,0.05348082155710273,0.0848844252342216,test_cal.npz@8f98decb,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb,0.0868617248076267,0.4687745993414683,0.0534808215571027,0.0848844252342216
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,Monocyte,mean_cp10k,Zero-shot + calibration,3017.0,0.3869769331830705,0.24413548523418507,0.5976725778768952,0.34128260747663075,0.20692042790558562,0.39213345189232174,test_cal.npz@8f98decb,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb,0.3869769331830705,0.5976725778768952,0.2069204279055856,0.3921334518923217
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,Monocyte,pseudobulk_log1p_cpm,Zero-shot + calibration,3017.0,0.2715737066848845,0.2363383721040145,0.6554525608666404,0.5406689641897384,0.18686536800109257,0.20352346761879678,test_cal.npz@8f98decb,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb,0.2715737066848845,0.6554525608666404,0.1868653680010925,0.2035234676187967
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,NK cell,mean_cp10k,Zero-shot + calibration,2940.0,0.4737396570632689,0.25335691374507985,0.6736856478198522,0.47965888042471577,0.3560768006675316,0.33519466821141475,test_cal.npz@8f98decb,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb,0.4737396570632689,0.6736856478198522,0.3560768006675316,0.3351946682114147
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,NK cell,pseudobulk_log1p_cpm,Zero-shot + calibration,2940.0,0.20039051019375795,0.20945230182318392,0.5562634550493483,0.46224904230504765,0.1412873063478025,0.15161377016187114,test_cal.npz@8f98decb,8f98decbff99e5f83bce9008a43fc6650b91df1f8a0beae16c028a8bed88bbdb,0.2003905101937579,0.5562634550493483,0.1412873063478025,0.1516137701618711
+giroux2022,fewshot,fewshot_n5/draw4,lora5,T cell,mean_cp10k,"LoRA, 5 donors",2870.0,0.586501399486912,0.40015117535863026,0.7344048019011988,0.6300746162061259,0.3197274674488106,0.552276726195225,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.586501399486912,0.7344048019011988,0.3197274674488106,0.552276726195225
+giroux2022,fewshot,fewshot_n5/draw4,lora5,T cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",2870.0,0.3178610233189082,0.3022468384275091,0.6900634955326531,0.6177965551927042,0.14371852782999545,0.31770103113210735,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.3178610233189082,0.6900634955326531,0.1437185278299954,0.3177010311321073
+giroux2022,fewshot,fewshot_n5/draw4,lora5,B cell,mean_cp10k,"LoRA, 5 donors",3061.0,0.2773624652419827,0.10887951178735521,0.565884313340693,0.36606520079361793,0.19131062703713655,0.21811434064127494,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.2773624652419827,0.565884313340693,0.1913106270371365,0.2181143406412749
+giroux2022,fewshot,fewshot_n5/draw4,lora5,B cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",3061.0,0.07471788657621363,0.08023639365034359,0.4704332503129004,0.3860828187239137,0.05124767647212572,0.06288804593128702,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.0747178865762136,0.4704332503129004,0.0512476764721257,0.062888045931287
+giroux2022,fewshot,fewshot_n5/draw4,lora5,Monocyte,mean_cp10k,"LoRA, 5 donors",3017.0,0.387693576543584,0.10886003789831526,0.5561945453231222,0.34044857618667607,0.23135570945879794,0.3768461300395229,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.387693576543584,0.5561945453231222,0.2313557094587979,0.3768461300395229
+giroux2022,fewshot,fewshot_n5/draw4,lora5,Monocyte,pseudobulk_log1p_cpm,"LoRA, 5 donors",3017.0,0.16157165784676183,0.1457732248299831,0.6573550923248582,0.5424548318382237,0.05732309264410143,0.18116366566769906,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.1615716578467618,0.6573550923248582,0.0573230926441014,0.181163665667699
+giroux2022,fewshot,fewshot_n5/draw4,lora5,NK cell,mean_cp10k,"LoRA, 5 donors",2940.0,0.39185317707025186,0.20185210740201712,0.6558646674649503,0.4812337365125405,0.2287961038399351,0.3508650443647105,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.3918531770702518,0.6558646674649503,0.2287961038399351,0.3508650443647105
+giroux2022,fewshot,fewshot_n5/draw4,lora5,NK cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",2940.0,0.11079414427968612,0.1023580854763448,0.5646910960578172,0.46421890108816055,0.05215487617594055,0.12053390669823008,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.1107941442796861,0.5646910960578172,0.0521548761759405,0.12053390669823
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,T cell,mean_cp10k,"scSemiProfiler, 5 donors",2870.0,0.5547886751630337,0.45901823737185665,0.7344048019011988,0.6300746162061259,0.16919872251429272,0.6345758700735188,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.5547886751630337,0.7344048019011988,0.1691987225142927,0.6345758700735188
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,T cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",2870.0,0.3654860961527421,0.37119123104086593,0.6900634955326531,0.6177965551927042,0.026301563547243136,0.5058453621069837,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.3654860961527421,0.6900634955326531,0.0263015635472431,0.5058453621069837
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,B cell,mean_cp10k,"scSemiProfiler, 5 donors",3061.0,0.35221032593329227,0.16665040046120225,0.565884313340693,0.36606520079361793,0.16239046812703176,0.40620586340927606,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.3522103259332922,0.565884313340693,0.1623904681270317,0.406205863409276
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,B cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3061.0,0.13048172677315975,0.13434800287471982,0.4704332503129004,0.3860828187239137,-0.0013660028415372638,0.27982499392938637,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.1304817267731597,0.4704332503129004,-0.0013660028415372,0.2798249939293863
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,Monocyte,mean_cp10k,"scSemiProfiler, 5 donors",3017.0,0.5133426086137882,0.2593036704201385,0.5561945453231222,0.34044857618667607,0.37732321291032134,0.40830454911819475,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.5133426086137882,0.5561945453231222,0.3773232129103213,0.4083045491181947
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,Monocyte,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3017.0,0.2122702608803613,0.18508839421204967,0.6573550923248582,0.5424548318382237,0.11122677794803779,0.1979297402356981,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.2122702608803613,0.6573550923248582,0.1112267779480377,0.1979297402356981
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,NK cell,mean_cp10k,"scSemiProfiler, 5 donors",2940.0,0.41489525922732184,0.27370688918600045,0.6558646674649503,0.4812337365125405,0.1895059658475211,0.4363364114383391,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.4148952592273218,0.6558646674649503,0.1895059658475211,0.4363364114383391
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,NK cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",2940.0,0.21810688432472095,0.19727647330919404,0.5646910960578172,0.46421890108816055,0.05925183238307594,0.30373498973029317,test_raw.npz@1339e763,1339e7631cd54c77bef770b2248bdc2ca560a6dc70e244ed61cd4d38a835bf3f,0.2181068843247209,0.5646910960578172,0.0592518323830759,0.3037349897302931
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,mean4,mean_cp10k,"Zero-shot, real bulk",,0.41539285297915385,0.23499400313883861,0.6280870820074911,0.4544555324247401,0.21436606498530086,0.4267948430989851,,,0.4153928529791538,0.6280870820074911,0.21436606498530084,0.4267948430989851
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,mean4,pseudobulk_log1p_cpm,"Zero-shot, real bulk",,0.24553057696205566,0.2306150219189883,0.5956357335570572,0.5026382767107505,0.09722458388053437,0.28726164187459263,,,0.2455305769620556,0.5956357335570572,0.09722458388053432,0.28726164187459263
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,mean4,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",,0.428531626840907,0.22551116512425065,0.7348645310219669,0.5762677755294683,0.2145398965439769,0.3997295765042479,,,0.428531626840907,0.7348645310219669,0.21453989654397684,0.3997295765042479
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,mean4,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",,0.2195129950381083,0.20316722351049205,0.7247476568611612,0.6425402717796735,0.07940275446138813,0.21815581001837595,,,0.21951299503810828,0.7247476568611612,0.07940275446138807,0.21815581001837592
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,mean4,mean_cp10k,Zero-shot + calibration,,0.4388308420922099,0.253553664527302,0.6509173585406117,0.45701234589022627,0.2591252621792077,0.39522977286495087,,,0.4388308420922099,0.6509173585406117,0.2591252621792077,0.3952297728649508
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,mean4,pseudobulk_log1p_cpm,Zero-shot + calibration,,0.23985028881736917,0.22401250810392492,0.5897475720644845,0.5007712117888894,0.13857519446587516,0.2152045451990969,,,0.2398502888173691,0.5897475720644845,0.13857519446587513,0.21520454519909687
+giroux2022,fewshot,fewshot_n5/draw4,lora5,mean4,mean_cp10k,"LoRA, 5 donors",,0.41085265458568265,0.20493570811157943,0.6280870820074911,0.4544555324247401,0.24279747694617004,0.37452556031018336,,,0.41085265458568265,0.6280870820074911,0.24279747694617002,0.37452556031018336
+giroux2022,fewshot,fewshot_n5/draw4,lora5,mean4,pseudobulk_log1p_cpm,"LoRA, 5 donors",,0.16623617800539245,0.15765363559604514,0.5956357335570572,0.5026382767107505,0.07611104328054079,0.17057166235733087,,,0.16623617800539245,0.5956357335570572,0.07611104328054075,0.17057166235733084
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,mean4,mean_cp10k,"scSemiProfiler, 5 donors",,0.45880921723435897,0.2896697993597995,0.6280870820074911,0.4544555324247401,0.22460459234979174,0.4713556735098322,,,0.45880921723435897,0.6280870820074911,0.2246045923497917,0.4713556735098322
+giroux2022,fewshot,fewshot_n5/draw4,scsemi5,mean4,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",,0.231586242032746,0.22197602535920738,0.5956357335570572,0.5026382767107505,0.0488535427592049,0.32183377150059034,,,0.231586242032746,0.5956357335570572,0.04885354275920488,0.32183377150059034

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw4/deg_limma.csv

@@ -0,0 +1,76 @@
+dataset,design,unit,arm,celltype,method,deg_scored,pred_defined,overlap,overlap_scorer,obs_list_size,gen_list_size,n_sig_obs,n_sig_gen,n_tested_obs,n_tested_gen,G_both,chance_overlap,broadcast_overlap,broadcast_overlap_scorer,broadcast_list_size,n_sig_broadcast,n_tested_broadcast,G_both_broadcast,broadcast_chance_overlap,condition
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,T cell,welch,True,True,0,0.0,0,22,0,22,5182,3978,3968,0.0,0,0.0,1,1,5452,5149,0.0,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,B cell,welch,True,True,0,0.0,0,1,0,1,4807,3449,3435,0.0,0,0.0,1,1,5452,4782,0.0,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,Monocyte,welch,True,True,0,0.0,1,3,1,3,5109,3712,3698,0.0008112493239588967,0,0.0,1,1,5452,5079,0.00019688915140775743,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,NK cell,welch,True,True,0,0.0,0,1,0,1,4929,3373,3364,0.0,0,0.0,1,1,5452,4899,0.0,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw4,zs_raw,DC,welch,True,True,0,0.0,0,0,0,0,4638,3193,3182,0.0,0,0.0,1,1,5452,4613,0.0,all_usable_raw.npz@ac755a41
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,T cell,welch,True,True,0,0.0,0,18,0,18,5182,3539,3536,0.0,0,0.0,0,0,5318,5182,0.0,all_usable_pseudo.npz@6400d82f
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,B cell,welch,True,True,0,0.0,0,0,0,0,4807,2405,2402,0.0,0,0.0,0,0,5318,4807,0.0,all_usable_pseudo.npz@6400d82f
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,Monocyte,welch,True,True,0,0.0,1,0,1,0,5109,2946,2941,0.0,0,0.0,0,0,5318,5109,0.0,all_usable_pseudo.npz@6400d82f
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,NK cell,welch,True,True,0,0.0,0,0,0,0,4929,2676,2672,0.0,0,0.0,0,0,5318,4929,0.0,all_usable_pseudo.npz@6400d82f
+giroux2022,fewshot,fewshot_n5/draw4,zs_pseudo,DC,welch,True,True,0,0.0,0,1,0,1,4638,2082,2081,0.0,0,0.0,0,0,5318,4638,0.0,all_usable_pseudo.npz@6400d82f
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,T cell,welch,True,True,0,0.0,0,46,0,46,5182,3610,3606,0.0,0,0.0,1,1,5452,5149,0.0,test_cal.npz@8f98decb
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,B cell,welch,True,True,0,0.0,0,0,0,0,4807,2529,2526,0.0,0,0.0,1,1,5452,4782,0.0,test_cal.npz@8f98decb
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,Monocyte,welch,True,True,0,0.0,1,0,1,0,5109,3194,3187,0.0,0,0.0,1,1,5452,5079,0.00019688915140775743,test_cal.npz@8f98decb
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,NK cell,welch,True,True,0,0.0,0,0,0,0,4929,3014,3010,0.0,0,0.0,1,1,5452,4899,0.0,test_cal.npz@8f98decb
+giroux2022,fewshot,fewshot_n5/draw4,zs_cal,DC,welch,True,True,0,0.0,0,1,0,1,4638,2255,2251,0.0,0,0.0,1,1,5452,4613,0.0,test_cal.npz@8f98decb
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