Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d3-score.log

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+09:29:52 ye2026_sepsis: 77 scored donors, 2 arm(s); fitting the observed reference
+09:29:56 reference: R1 11550 cells, PCA var 0.336, R2 control P/C 0.9804/0.9997; contrast on
+09:29:56 observed top-50 DEG lists: T 50 (sig 1478, 57+20 donors, 274345 cells), B 50 (sig 956, 57+20 donors, 97853 cells), Mono 50 (sig 2437, 57+20 donors, 103223 cells), NK 50 (sig 1089, 57+20 donors, 43846 cells), DC 50 (sig 1499, 53+20 donors, 2961 cells)
+09:29:56 lora5: loading generated_counts (115500 cells in the NPZ, 115500 scored)
+09:30:08 lora5: Poisson read-out nnz 30279486 (whole NPZ), median library 1480; annotating
+09:30:18 lora5: L1 0.4969 (null 0.5165865237048973) P/C 0.8843/0.6553 pb r 0.8822 top1 0.221 mono 14.6% (22.6 s)
+09:30:18 lora5: top-50 DEG 17/250 (T 8, B 2, Mono 3, NK 1, DC 3); broadcast 19 (0.32 s)
+09:30:18 lora5_k4000: loading generated_counts (115500 cells in the NPZ, 115500 scored)
+09:30:32 lora5_k4000: Poisson read-out nnz 32010764 (whole NPZ), median library 1666; annotating
+09:30:42 lora5_k4000: L1 0.4018 (null 0.5165865237048973) P/C 0.9006/0.6630 pb r 0.8867 top1 0.169 mono 20.3% (23.9 s)
+09:30:42 lora5_k4000: top-50 DEG 15/250 (T 5, B 2, Mono 7, NK 0, DC 1); broadcast 19 (0.33 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+lora5         0.4969                0.5166     0.8843    0.6553        0.8821       0.8139       0.8822   0.2208       14.6329       20.4733          1480.0          1998.0                     0.4109                               0.3941                           0.3264                                     0.2972          8.0          2.0             3.0           1.0           3.0           17.0          250.0                 14.0                     19.0     22.6
+lora5_k4000   0.4018                0.5166     0.9006    0.6630        0.9003       0.8134       0.8867   0.1688       20.3333       20.4733          1666.0          1998.0                     0.2666                               0.3160                           0.3264                                     0.2972          5.0          2.0             7.0           0.0           1.0           15.0          250.0                 14.0                     19.0     23.9
+09:30:42 done in 55.0 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/scores/ye2026_sepsis/draw3
+{"lora5": {"comp_l1": 0.4969, "coverage": 0.6553, "pb_r_median": 0.8822, "contrast_mean_cp10k_r_gen": 0.4109, "deg_top50_sum": 17}, "lora5_k4000": {"comp_l1": 0.4018, "coverage": 0.663, "pb_r_median": 0.8867, "contrast_mean_cp10k_r_gen": 0.2666, "deg_top50_sum": 15}}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d4-annot.log

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+{"dataset": "ye2026_sepsis", "draw": 4, "cells": 488000, "samples": 122, "seconds": 79.6, "labels_l1": {"T cell": 274922, "Monocyte": 106075, "B cell": 56016, "NK cell": 24601, "Other": 24159, "DC": 2227}}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d4-merge.log

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+{"output_sha256": "aae53a450b3fef8321081bcef6fc0946b4ad3f4841eeb83258b79822fb559c43", "cells": 115500, "bulks": 77, "seed": 24260939, "seconds": 27.1}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d4-pack.log

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+{"file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/share/ye2026_sepsis/lora5k4_bulkonly_ye2026_sepsis_draw4.h5ad", "cells": 488000, "samples": 122, "nnz": 135515762, "bytes": 311819044}