Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/run_all_FB_20261006T200802.log

@@ -0,0 +1,42 @@
+2026-10-06T20:08:02 lane FB: 4 cores, cohorts ye2026_sepsis immicro
+2026-10-06T20:08:04 --- ye2026_sepsis fewshot0_full (77 mixture, 5 reference samples, 28 states, 15992 genes)
+2026-10-06T20:47:54 ye2026_sepsis fewshot0_full: elapsed min: 39.75 
+2026-10-06T20:47:57 --- ye2026_sepsis fewshot1_full (77 mixture, 5 reference samples, 28 states, 15851 genes)
+2026-10-06T21:26:11 ye2026_sepsis fewshot1_full: elapsed min: 38.17 
+2026-10-06T21:26:14 --- ye2026_sepsis fewshot2_full (77 mixture, 5 reference samples, 27 states, 15737 genes)
+2026-10-06T22:03:53 ye2026_sepsis fewshot2_full: elapsed min: 37.58 
+2026-10-06T22:03:56 --- ye2026_sepsis fewshot3_full (77 mixture, 5 reference samples, 28 states, 15892 genes)
+2026-10-06T22:53:45 ye2026_sepsis fewshot3_full: elapsed min: 49.75 
+2026-10-06T22:53:48 --- ye2026_sepsis fewshot4_full (77 mixture, 5 reference samples, 28 states, 16072 genes)
+2026-10-06T23:33:59 ye2026_sepsis fewshot4_full: elapsed min: 40.05 
+2026-10-06T23:34:01 --- ye2026_sepsis cv0_full (17 mixture, 65 reference samples, 29 states, 17399 genes)
+2026-10-06T23:44:32 ye2026_sepsis cv0_full: elapsed min: 10.44 
+2026-10-06T23:44:34 --- ye2026_sepsis cv1_full (17 mixture, 65 reference samples, 29 states, 17388 genes)
+2026-10-06T23:55:27 ye2026_sepsis cv1_full: elapsed min: 10.79 
+2026-10-06T23:55:29 --- ye2026_sepsis cv2_full (16 mixture, 66 reference samples, 29 states, 17366 genes)
+2026-10-07T00:04:09 ye2026_sepsis cv2_full: elapsed min: 8.58 
+2026-10-07T00:04:10 --- ye2026_sepsis cv3_full (16 mixture, 66 reference samples, 29 states, 17370 genes)
+2026-10-07T00:12:38 ye2026_sepsis cv3_full: elapsed min: 8.39 
+2026-10-07T00:12:40 --- ye2026_sepsis cv4_full (16 mixture, 66 reference samples, 29 states, 17397 genes)
+2026-10-07T00:21:55 ye2026_sepsis cv4_full: elapsed min: 9.18 
+2026-10-07T00:21:58 --- immicro fewshot0_full (102 mixture, 5 reference samples, 27 states, 14209 genes)
+2026-10-07T01:08:28 immicro fewshot0_full: elapsed min: 46.43 
+2026-10-07T01:08:30 --- immicro fewshot1_full (102 mixture, 5 reference samples, 28 states, 14314 genes)
+2026-10-07T01:55:52 immicro fewshot1_full: elapsed min: 47.28 
+2026-10-07T01:55:54 --- immicro fewshot2_full (102 mixture, 5 reference samples, 28 states, 14274 genes)
+2026-10-07T02:43:48 immicro fewshot2_full: elapsed min: 47.82 
+2026-10-07T02:43:51 --- immicro fewshot3_full (102 mixture, 5 reference samples, 27 states, 14382 genes)
+2026-10-07T03:31:35 immicro fewshot3_full: elapsed min: 47.65 
+2026-10-07T03:31:37 --- immicro fewshot4_full (102 mixture, 5 reference samples, 28 states, 14228 genes)
+2026-10-07T04:20:08 immicro fewshot4_full: elapsed min: 48.43 
+2026-10-07T04:20:09 --- immicro cv0_full (22 mixture, 85 reference samples, 29 states, 15205 genes)
+2026-10-07T04:32:09 immicro cv0_full: elapsed min: 11.93 
+2026-10-07T04:32:11 --- immicro cv1_full (22 mixture, 85 reference samples, 29 states, 15217 genes)
+2026-10-07T04:43:32 immicro cv1_full: elapsed min: 11.28 
+2026-10-07T04:43:34 --- immicro cv2_full (21 mixture, 86 reference samples, 29 states, 15226 genes)
+2026-10-07T04:54:55 immicro cv2_full: elapsed min: 11.28 
+2026-10-07T04:54:57 --- immicro cv3_full (21 mixture, 86 reference samples, 29 states, 15216 genes)
+2026-10-07T05:06:12 immicro cv3_full: elapsed min: 11.18 
+2026-10-07T05:06:14 --- immicro cv4_full (21 mixture, 86 reference samples, 29 states, 15224 genes)
+2026-10-07T05:17:25 immicro cv4_full: elapsed min: 11.11 
+2026-10-07T05:17:25 lane FB finished; failed=0

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/split_giroux2022_cv0_full.log

@@ -0,0 +1,14 @@
+Traceback (most recent call last):
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 90, in <module>
+    sys.exit(main())
+             ^^^^^^
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 59, in main
+    gcols = np.asarray([gpos[g] for g in ag["gene_ids"].astype(str)], dtype=np.int64)
+                                         ~~^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/site-packages/numpy/lib/_npyio_impl.py", line 257, in __getitem__
+    return format.read_array(
+           ^^^^^^^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/site-packages/numpy/lib/_format_impl.py", line 833, in read_array
+    raise ValueError("Object arrays cannot be loaded when "
+ValueError: Object arrays cannot be loaded when allow_pickle=False
+{"dataset": "giroux2022", "kind": "cv", "idx": 0, "n_reference_samples": 20, "n_mixture_samples": 4, "reference_cells": 217160, "states": 29, "genes_kept": 15671, "types": ["B cell", "DC", "Monocyte", "NK cell", "Other", "T cell"]}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/split_giroux2022_cv1.log

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+{"dataset": "giroux2022", "kind": "cv", "idx": 1, "n_reference_samples": 19, "n_mixture_samples": 5, "reference_cells": 199222, "states": 29, "genes_kept": 5422, "types": ["B cell", "DC", "Monocyte", "NK cell", "Other", "T cell"]}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/split_giroux2022_cv1_full.log

@@ -0,0 +1,14 @@
+Traceback (most recent call last):
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 90, in <module>
+    sys.exit(main())
+             ^^^^^^
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 59, in main
+    gcols = np.asarray([gpos[g] for g in ag["gene_ids"].astype(str)], dtype=np.int64)
+                                         ~~^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/site-packages/numpy/lib/_npyio_impl.py", line 257, in __getitem__
+    return format.read_array(
+           ^^^^^^^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/site-packages/numpy/lib/_format_impl.py", line 833, in read_array
+    raise ValueError("Object arrays cannot be loaded when "
+ValueError: Object arrays cannot be loaded when allow_pickle=False
+{"dataset": "giroux2022", "kind": "cv", "idx": 1, "n_reference_samples": 19, "n_mixture_samples": 5, "reference_cells": 199222, "states": 29, "genes_kept": 15609, "types": ["B cell", "DC", "Monocyte", "NK cell", "Other", "T cell"]}