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Archive 4 checkpoints (1-4)

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  1. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-giroux2022-scsemi_cv_20261002-f0_20261008T105539.log +11 -0
  2. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-giroux2022-scsemi_cv_20261002-f1_20261008T105552.log +11 -0
  3. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-giroux2022-scsemi_cv_20261002-f2_20261008T105605.log +11 -0
  4. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-giroux2022-scsemi_cv_20261002-f3_20261008T105618.log +11 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-giroux2022-scsemi_cv_20261002-f0_20261008T105539.log ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 10:55:39 giroux2022: 4 scored donors, 1 arm(s); fitting the observed reference
2
+ 10:55:40 reference: R1 600 cells, PCA var 0.314, R2 control P/C 1.0000/1.0000; contrast on
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+ 10:55:40 observed top-50 DEG lists: T 0 (sig 0, 2+2 donors, 21247 cells), B 0 (sig 0, 2+2 donors, 1583 cells), Mono 0 (sig 0, 2+2 donors, 7573 cells), NK 0 (sig 0, 2+2 donors, 3093 cells), DC 0 (sig 0, 2+2 donors, 811 cells)
4
+ 10:55:40 scsemi__raw: loading generated_counts (6000 cells in the NPZ, 6000 scored)
5
+ 10:55:40 scsemi__raw: Poisson read-out nnz 663971 (whole NPZ), median library 481; annotating
6
+ 10:55:43 scsemi__raw: L1 0.3147 (null 0.6553045090319294) P/C 1.0000/0.8267 pb r 0.6245 top1 0.750 mono 32.7% (3.5 s)
7
+ 10:55:43 scsemi__raw: top-50 DEG 0/0 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.01 s)
8
+ comp_l1 comp_l1_obs_loo_null precision coverage precision_dm coverage_dm pb_r_median pb_top1 mono_pct_gen mono_pct_obs median_umi_gen median_umi_obs contrast_mean_cp10k_r_gen contrast_pseudobulk_log1p_cpm_r_gen contrast_mean_cp10k_r_broadcast contrast_pseudobulk_log1p_cpm_r_broadcast deg_top50_T deg_top50_B deg_top50_Mono deg_top50_NK deg_top50_DC deg_top50_sum deg_top50_max deg_top50_sum_4type deg_top50_sum_broadcast seconds
9
+ scsemi__raw 0.3147 0.6553 1.0 0.8267 0.8533 0.53 0.6245 0.75 32.6667 23.8836 481.0 396.0 0.4115 0.1803 0.5218 0.596 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.5
10
+ 10:55:43 done in 3.9 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/giroux2022/scsemi_cv_20261002/fold0
11
+ UNIT_EXIT 0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-giroux2022-scsemi_cv_20261002-f1_20261008T105552.log ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 10:55:53 giroux2022: 5 scored donors, 1 arm(s); fitting the observed reference
2
+ 10:55:53 reference: R1 750 cells, PCA var 0.297, R2 control P/C 1.0000/1.0000; contrast on
3
+ 10:55:53 observed top-50 DEG lists: T 0 (sig 0, 3+2 donors, 31931 cells), B 0 (sig 0, 3+2 donors, 4286 cells), Mono 0 (sig 0, 3+2 donors, 10458 cells), NK 0 (sig 0, 3+2 donors, 4819 cells), DC 0 (sig 0, 3+2 donors, 662 cells)
4
+ 10:55:53 scsemi__raw: loading generated_counts (7500 cells in the NPZ, 7500 scored)
5
+ 10:55:53 scsemi__raw: Poisson read-out nnz 828461 (whole NPZ), median library 457; annotating
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+ 10:55:57 scsemi__raw: L1 0.2292 (null 0.3003748601935042) P/C 1.0000/0.7840 pb r 0.6210 top1 0.400 mono 28.5% (3.7 s)
7
+ 10:55:57 scsemi__raw: top-50 DEG 0/0 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.01 s)
8
+ comp_l1 comp_l1_obs_loo_null precision coverage precision_dm coverage_dm pb_r_median pb_top1 mono_pct_gen mono_pct_obs median_umi_gen median_umi_obs contrast_mean_cp10k_r_gen contrast_pseudobulk_log1p_cpm_r_gen contrast_mean_cp10k_r_broadcast contrast_pseudobulk_log1p_cpm_r_broadcast deg_top50_T deg_top50_B deg_top50_Mono deg_top50_NK deg_top50_DC deg_top50_sum deg_top50_max deg_top50_sum_4type deg_top50_sum_broadcast seconds
9
+ scsemi__raw 0.2292 0.3004 1.0 0.784 0.6093 0.3147 0.621 0.4 28.48 21.4006 457.0 516.0 0.3137 0.1684 0.4677 0.5582 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.7
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+ 10:55:57 done in 4.1 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/giroux2022/scsemi_cv_20261002/fold1
11
+ UNIT_EXIT 0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-giroux2022-scsemi_cv_20261002-f2_20261008T105605.log ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 10:56:06 giroux2022: 6 scored donors, 1 arm(s); fitting the observed reference
2
+ 10:56:06 reference: R1 900 cells, PCA var 0.274, R2 control P/C 1.0000/1.0000; contrast on
3
+ 10:56:06 observed top-50 DEG lists: T 50 (sig 824, 3+3 donors, 40022 cells), B 0 (sig 0, 3+3 donors, 5174 cells), Mono 5 (sig 5, 3+3 donors, 7544 cells), NK 3 (sig 3, 3+3 donors, 6830 cells), DC 0 (sig 0, 3+3 donors, 895 cells)
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+ 10:56:06 scsemi__raw: loading generated_counts (9000 cells in the NPZ, 9000 scored)
5
+ 10:56:07 scsemi__raw: Poisson read-out nnz 999949 (whole NPZ), median library 487; annotating
6
+ 10:56:10 scsemi__raw: L1 0.2517 (null 0.30950626867249365) P/C 1.0000/0.8711 pb r 0.6099 top1 0.333 mono 15.8% (3.8 s)
7
+ 10:56:10 scsemi__raw: top-50 DEG 0/58 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 2 (0.01 s)
8
+ comp_l1 comp_l1_obs_loo_null precision coverage precision_dm coverage_dm pb_r_median pb_top1 mono_pct_gen mono_pct_obs median_umi_gen median_umi_obs contrast_mean_cp10k_r_gen contrast_pseudobulk_log1p_cpm_r_gen contrast_mean_cp10k_r_broadcast contrast_pseudobulk_log1p_cpm_r_broadcast deg_top50_T deg_top50_B deg_top50_Mono deg_top50_NK deg_top50_DC deg_top50_sum deg_top50_max deg_top50_sum_4type deg_top50_sum_broadcast seconds
9
+ scsemi__raw 0.2517 0.3095 1.0 0.8711 0.7922 0.3522 0.6099 0.3333 15.7667 12.1762 487.0 428.0 0.3124 0.183 0.3268 0.5526 0.0 0.0 0.0 0.0 0.0 0.0 58.0 0.0 2.0 3.8
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+ 10:56:10 done in 4.2 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/giroux2022/scsemi_cv_20261002/fold2
11
+ UNIT_EXIT 0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-giroux2022-scsemi_cv_20261002-f3_20261008T105618.log ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 10:56:19 giroux2022: 6 scored donors, 1 arm(s); fitting the observed reference
2
+ 10:56:19 reference: R1 900 cells, PCA var 0.270, R2 control P/C 1.0000/1.0000; contrast on
3
+ 10:56:19 observed top-50 DEG lists: T 2 (sig 2, 3+3 donors, 38529 cells), B 18 (sig 18, 3+3 donors, 4493 cells), Mono 2 (sig 2, 3+3 donors, 11454 cells), NK 0 (sig 0, 3+3 donors, 7180 cells), DC 0 (sig 0, 3+3 donors, 1327 cells)
4
+ 10:56:19 scsemi__raw: loading generated_counts (9000 cells in the NPZ, 9000 scored)
5
+ 10:56:20 scsemi__raw: Poisson read-out nnz 1027527 (whole NPZ), median library 471; annotating
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+ 10:56:23 scsemi__raw: L1 0.2388 (null 0.2720088351480377) P/C 1.0000/0.8233 pb r 0.6392 top1 0.333 mono 14.6% (4.0 s)
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+ 10:56:23 scsemi__raw: top-50 DEG 0/22 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.01 s)
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+ comp_l1 comp_l1_obs_loo_null precision coverage precision_dm coverage_dm pb_r_median pb_top1 mono_pct_gen mono_pct_obs median_umi_gen median_umi_obs contrast_mean_cp10k_r_gen contrast_pseudobulk_log1p_cpm_r_gen contrast_mean_cp10k_r_broadcast contrast_pseudobulk_log1p_cpm_r_broadcast deg_top50_T deg_top50_B deg_top50_Mono deg_top50_NK deg_top50_DC deg_top50_sum deg_top50_max deg_top50_sum_4type deg_top50_sum_broadcast seconds
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+ scsemi__raw 0.2388 0.272 1.0 0.8233 0.6122 0.3211 0.6392 0.3333 14.5778 16.8814 471.0 473.0 0.3783 0.2437 0.3411 0.5731 0.0 0.0 0.0 0.0 0.0 0.0 22.0 0.0 0.0 4.0
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+ 10:56:23 done in 4.4 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/giroux2022/scsemi_cv_20261002/fold3
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+ UNIT_EXIT 0