Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deck/README.md +5 -0
- paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deconvolution/ye2026_sepsis/disease/draw0/ADOPTION.json +438 -0
- paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deconvolution/ye2026_sepsis/disease/draw1/ADOPTION.json +384 -0
- paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deconvolution/ye2026_sepsis/disease/draw2/ADOPTION.json +384 -0
paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deck/README.md
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# Strict campaign deck outputs
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The superseded paper_figures_review.pdf / .pptx working copies were removed after verified archival read-back. Current available-results review: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/presentations/2026-09-30--paper-summary--r00/PBISC-Diffusion_results_review_20261013.pdf
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The running campaign retains its separate gated final-output target paper_figures_final.pdf / .pptx. No experiment is considered complete from the available-results review.
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paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deconvolution/ye2026_sepsis/disease/draw0/ADOPTION.json
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|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.deconvolution.adopted-legacy.v1",
|
| 3 |
+
"support_sha256": "ad30daaf76d46edb695df2ae02cb67f8d8b3ae709630e8ec7ae87056258f9bda",
|
| 4 |
+
"cohort": "ye2026_sepsis",
|
| 5 |
+
"unit": "draw0_n5",
|
| 6 |
+
"reference_sample_ids": [
|
| 7 |
+
"HC07",
|
| 8 |
+
"Abd-S66",
|
| 9 |
+
"Res-S150",
|
| 10 |
+
"Skin-S74",
|
| 11 |
+
"Res-S77"
|
| 12 |
+
],
|
| 13 |
+
"mixture_sample_ids": [
|
| 14 |
+
"Abd-PS04",
|
| 15 |
+
"Abd-PS05",
|
| 16 |
+
"Abd-PS07",
|
| 17 |
+
"Abd-PS19",
|
| 18 |
+
"Abd-PS20",
|
| 19 |
+
"Abd-PS23",
|
| 20 |
+
"Abd-PS27",
|
| 21 |
+
"Abd-S102",
|
| 22 |
+
"Abd-S103",
|
| 23 |
+
"Abd-S120",
|
| 24 |
+
"Abd-S123",
|
| 25 |
+
"Abd-S156",
|
| 26 |
+
"Abd-S39",
|
| 27 |
+
"Abd-S42",
|
| 28 |
+
"Abd-S47",
|
| 29 |
+
"Abd-S51",
|
| 30 |
+
"Abd-S54",
|
| 31 |
+
"Abd-S57",
|
| 32 |
+
"Abd-S79",
|
| 33 |
+
"Abd-S83",
|
| 34 |
+
"Abd-S98",
|
| 35 |
+
"HC01",
|
| 36 |
+
"HC05",
|
| 37 |
+
"HC09",
|
| 38 |
+
"HC12",
|
| 39 |
+
"HC13",
|
| 40 |
+
"HC16",
|
| 41 |
+
"IC10",
|
| 42 |
+
"IC15",
|
| 43 |
+
"IC16",
|
| 44 |
+
"IC19",
|
| 45 |
+
"IC22",
|
| 46 |
+
"IC23",
|
| 47 |
+
"PHC01",
|
| 48 |
+
"PHC02",
|
| 49 |
+
"PHC03",
|
| 50 |
+
"PHC05",
|
| 51 |
+
"PIC01",
|
| 52 |
+
"PIC02",
|
| 53 |
+
"PIC04",
|
| 54 |
+
"PIC05",
|
| 55 |
+
"Res-PS02",
|
| 56 |
+
"Res-PS03",
|
| 57 |
+
"Res-PS12",
|
| 58 |
+
"Res-PS16",
|
| 59 |
+
"Res-PS21",
|
| 60 |
+
"Res-PS22",
|
| 61 |
+
"Res-PS25",
|
| 62 |
+
"Res-PS26",
|
| 63 |
+
"Res-S10",
|
| 64 |
+
"Res-S125",
|
| 65 |
+
"Res-S127",
|
| 66 |
+
"Res-S136",
|
| 67 |
+
"Res-S139",
|
| 68 |
+
"Res-S146",
|
| 69 |
+
"Res-S149",
|
| 70 |
+
"Res-S164",
|
| 71 |
+
"Res-S166",
|
| 72 |
+
"Res-S174",
|
| 73 |
+
"Res-S177",
|
| 74 |
+
"Res-S184",
|
| 75 |
+
"Res-S19",
|
| 76 |
+
"Res-S26",
|
| 77 |
+
"Res-S40",
|
| 78 |
+
"Res-S87",
|
| 79 |
+
"Skin-S140",
|
| 80 |
+
"Skin-S142",
|
| 81 |
+
"Skin-S152",
|
| 82 |
+
"Skin-S38",
|
| 83 |
+
"Skin-S43",
|
| 84 |
+
"Skin-S46",
|
| 85 |
+
"Skin-S52",
|
| 86 |
+
"Uri-S134",
|
| 87 |
+
"Uri-S147",
|
| 88 |
+
"Uri-S157",
|
| 89 |
+
"Uri-S20",
|
| 90 |
+
"Uri-S93"
|
| 91 |
+
],
|
| 92 |
+
"legacy_draw_index": 0,
|
| 93 |
+
"legacy_split": "fewshot0",
|
| 94 |
+
"method_execution": "historical_outputs_reused_no_method_execution",
|
| 95 |
+
"input_equivalence": "exact support and ordered mixtures; original recorded draw-specific reference-cell subsampling retained",
|
| 96 |
+
"output_hash_basis": "current historical completed and scored files, verified now; not a retroactive native execution receipt",
|
| 97 |
+
"aggregate_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/data/ye2026_sepsis/aggregates_full.npz",
|
| 98 |
+
"aggregate_sha256": "1c866cbb8990359c870f46804e55cbae4a38cb82b5e0bf5f47bd9a552ada966a",
|
| 99 |
+
"fraction_serialization_max_abs_error": 1.1102230246251565e-16,
|
| 100 |
+
"legacy_endpoints": {
|
| 101 |
+
"full": {
|
| 102 |
+
"n_samples": 77,
|
| 103 |
+
"has_cell_type_expression": true,
|
| 104 |
+
"hires_imputed_genes": null,
|
| 105 |
+
"old_scores_reused": false,
|
| 106 |
+
"fresh_corrected_scoring_required": true,
|
| 107 |
+
"recorded_scorer_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
|
| 108 |
+
"current_scorer_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
|
| 109 |
+
"scorer_source_matches_current": true
|
| 110 |
+
},
|
| 111 |
+
"cibersortx": {
|
| 112 |
+
"n_samples": 77,
|
| 113 |
+
"has_cell_type_expression": true,
|
| 114 |
+
"hires_imputed_genes": {
|
| 115 |
+
"fewshot0|T cell": 4339,
|
| 116 |
+
"fewshot0|B cell": 2875,
|
| 117 |
+
"fewshot0|Monocyte": 1625,
|
| 118 |
+
"fewshot0|NK cell": 2678,
|
| 119 |
+
"fewshot0|DC": 2377,
|
| 120 |
+
"fewshot0|Other": 830
|
| 121 |
+
},
|
| 122 |
+
"old_scores_reused": false,
|
| 123 |
+
"fresh_corrected_scoring_required": true,
|
| 124 |
+
"recorded_scorer_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
|
| 125 |
+
"current_scorer_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
|
| 126 |
+
"scorer_source_matches_current": true
|
| 127 |
+
}
|
| 128 |
+
},
|
| 129 |
+
"files": [
|
| 130 |
+
{
|
| 131 |
+
"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/fewshot0/INPUT.json",
|
| 132 |
+
"sha256": "c4a0d29531a629704cd3d3ce8fa88bf34ed6e6fadfe49de22f7953dc88414b9e",
|
| 133 |
+
"bytes": 1925,
|
| 134 |
+
"view": "cibersortx/ye2026_sepsis/fewshot0/INPUT.json"
|
| 135 |
+
},
|
| 136 |
+
{
|
| 137 |
+
"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/cibersortx/ye2026_sepsis/fewshot0/hires_genes.txt",
|
| 138 |
+
"sha256": "6f560c4508fa29d67f1b6db3d6bfb2ba103b629526d87bef29ac3906f26263ce",
|
| 139 |
+
"bytes": 95600,
|
| 140 |
+
"view": "cibersortx/ye2026_sepsis/fewshot0/hires_genes.txt"
|
| 141 |
+
},
|
| 142 |
+
{
|
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ADDED
|
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| 1 |
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{
|
| 2 |
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|
| 3 |
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|
| 4 |
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"cohort": "ye2026_sepsis",
|
| 5 |
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"unit": "draw1_n5",
|
| 6 |
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"reference_sample_ids": [
|
| 7 |
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"HC12",
|
| 8 |
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"Uri-S134",
|
| 9 |
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"Uri-S147",
|
| 10 |
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"Res-S164",
|
| 11 |
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|
| 12 |
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],
|
| 13 |
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"mixture_sample_ids": [
|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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| 18 |
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| 24 |
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| 28 |
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| 30 |
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|
| 31 |
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|
| 32 |
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|
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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"HC07",
|
| 39 |
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"HC09",
|
| 40 |
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"HC13",
|
| 41 |
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"HC16",
|
| 42 |
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"IC10",
|
| 43 |
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"IC15",
|
| 44 |
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"IC16",
|
| 45 |
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"IC19",
|
| 46 |
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"IC22",
|
| 47 |
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|
| 48 |
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"PHC01",
|
| 49 |
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"PHC02",
|
| 50 |
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"PHC03",
|
| 51 |
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"PHC05",
|
| 52 |
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"PIC01",
|
| 53 |
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"PIC02",
|
| 54 |
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"PIC04",
|
| 55 |
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"PIC05",
|
| 56 |
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"Res-PS02",
|
| 57 |
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"Res-PS03",
|
| 58 |
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"Res-PS12",
|
| 59 |
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"Res-PS16",
|
| 60 |
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"Res-PS21",
|
| 61 |
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"Res-PS22",
|
| 62 |
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"Res-PS25",
|
| 63 |
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"Res-PS26",
|
| 64 |
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"Res-S10",
|
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paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deconvolution/ye2026_sepsis/disease/draw2/ADOPTION.json
ADDED
|
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|
| 1 |
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{
|
| 2 |
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"schema": "pbisc.deconvolution.adopted-legacy.v1",
|
| 3 |
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"support_sha256": "ea331f967a3a212b91cd144bd8ba62cea3cbfe3bdcc9e77268e190757327b0e2",
|
| 4 |
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"cohort": "ye2026_sepsis",
|
| 5 |
+
"unit": "draw2_n5",
|
| 6 |
+
"reference_sample_ids": [
|
| 7 |
+
"PIC01",
|
| 8 |
+
"Res-S177",
|
| 9 |
+
"Skin-S74",
|
| 10 |
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"Res-S136",
|
| 11 |
+
"Res-S77"
|
| 12 |
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],
|
| 13 |
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"mixture_sample_ids": [
|
| 14 |
+
"Abd-PS04",
|
| 15 |
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"Abd-PS05",
|
| 16 |
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"Abd-PS07",
|
| 17 |
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"Abd-PS19",
|
| 18 |
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"Abd-PS20",
|
| 19 |
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"Abd-PS23",
|
| 20 |
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"Abd-PS27",
|
| 21 |
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"Abd-S102",
|
| 22 |
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"Abd-S103",
|
| 23 |
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"Abd-S120",
|
| 24 |
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"Abd-S123",
|
| 25 |
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"Abd-S156",
|
| 26 |
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"Abd-S39",
|
| 27 |
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"Abd-S42",
|
| 28 |
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"Abd-S47",
|
| 29 |
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"Abd-S51",
|
| 30 |
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"Abd-S54",
|
| 31 |
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"Abd-S57",
|
| 32 |
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"Abd-S66",
|
| 33 |
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"Abd-S79",
|
| 34 |
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"Abd-S83",
|
| 35 |
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"Abd-S98",
|
| 36 |
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"HC01",
|
| 37 |
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"HC05",
|
| 38 |
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"HC07",
|
| 39 |
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"HC09",
|
| 40 |
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"HC12",
|
| 41 |
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"HC13",
|
| 42 |
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"HC16",
|
| 43 |
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"IC10",
|
| 44 |
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"IC15",
|
| 45 |
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"IC16",
|
| 46 |
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"IC19",
|
| 47 |
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"IC22",
|
| 48 |
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"IC23",
|
| 49 |
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"PHC01",
|
| 50 |
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"PHC02",
|
| 51 |
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"PHC03",
|
| 52 |
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"PHC05",
|
| 53 |
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"PIC02",
|
| 54 |
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"PIC04",
|
| 55 |
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"PIC05",
|
| 56 |
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"Res-PS02",
|
| 57 |
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"Res-PS03",
|
| 58 |
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"Res-PS12",
|
| 59 |
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"Res-PS16",
|
| 60 |
+
"Res-PS21",
|
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