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Archive 4 checkpoints (1-4)

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  1. paper-releases/pbisc-diffusion/updates/20261002T002920Z-deck-extra-metrics-scsemi-prep/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/queues/extra_metrics_scsemi_20261002.txt +15 -0
  2. paper-releases/pbisc-diffusion/updates/20261002T002920Z-deck-extra-metrics-scsemi-prep/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt +41 -0
  3. paper-releases/pbisc-diffusion/updates/20261002T002920Z-deck-extra-metrics-scsemi-prep/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_cv_budget_20261002.txt +69 -0
  4. paper-releases/pbisc-diffusion/updates/20261002T002920Z-deck-extra-metrics-scsemi-prep/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_cv_budget_20261002_userorder.txt +68 -0
paper-releases/pbisc-diffusion/updates/20261002T002920Z-deck-extra-metrics-scsemi-prep/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/queues/extra_metrics_scsemi_20261002.txt ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # tools/run_extra_unit.sh job file (2026-10-02): extra metrics for the scSemiProfiler CV / equal-budget arms, after
2
+ # tools/finalize_scsemi_cv_budget.sh has scored them. New units only (scores_extra/<ds>/<unit>/); existing units untouched.
3
+ # Run with THREADS 8: the existing pooled units ran with 8 threads, and a --design scored rerun of ji2025_chili/pooled
4
+ # real_lora__raw at 8 threads reproduced its metrics.csv exactly (at 6 threads some values moved by up to 0.007).
5
+ # bash tools/run_extra_unit.sh extra-scsemi-20261002 8 24G queues/extra_metrics_scsemi_20261002.txt scores_extra/_fetch_tmp
6
+ --design scored --dataset ji2025_chili --score-dir scores/ji2025_chili/scsemi_cv_20261002/pooled --arms scsemi__raw --unit scsemi_cv_20261002/pooled
7
+ --design scored --dataset giroux2022 --score-dir scores/giroux2022/scsemi_cv_20261002/pooled --arms scsemi__raw --unit scsemi_cv_20261002/pooled
8
+ --design scored --dataset immicro --score-dir scores/immicro/scsemi_cv_20261002/pooled --arms scsemi__raw --unit scsemi_cv_20261002/pooled
9
+ --design scored --dataset ye2026_sepsis --score-dir scores/ye2026_sepsis/scsemi_cv_20261002/pooled --arms scsemi__raw --unit scsemi_cv_20261002/pooled
10
+ --design scored --dataset imperial_eskd --score-dir scores/imperial_eskd/scsemi_cv_20261002/pooled --arms scsemi__raw --unit scsemi_cv_20261002/pooled
11
+ --design scored --dataset immicro --score-dir scores/immicro/scsemi_budget_20261002/pooled --arms scsemi_n5__raw,scsemi_n10__raw,scsemi_n20__raw,scsemi_n40__raw --unit scsemi_budget_20261002/pooled
12
+ --design scored --dataset ye2026_sepsis --score-dir scores/ye2026_sepsis/scsemi_budget_20261002/pooled --arms scsemi_n5__raw,scsemi_n10__raw,scsemi_n20__raw,scsemi_n40__raw --unit scsemi_budget_20261002/pooled
13
+ # the matching LoRA learning-curve arms (already scored in scores/<ds>/pooled; not covered by the existing pooled units)
14
+ --design scored --dataset immicro --score-dir scores/immicro/pooled --arms lora_n5__raw,lora_n10__raw,lora_n20__raw,lora_n40__raw --unit lora_budget_20261002/pooled
15
+ --design scored --dataset ye2026_sepsis --score-dir scores/ye2026_sepsis/pooled --arms lora_n5__raw,lora_n10__raw,lora_n20__raw,lora_n40__raw --unit lora_budget_20261002/pooled
paper-releases/pbisc-diffusion/updates/20261002T002920Z-deck-extra-metrics-scsemi-prep/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt ADDED
@@ -0,0 +1,41 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # OPTIONAL plain equal-budget B: each split selects its own hvset and pretrains its own representatives (no reuse)
2
+ budget|immicro|0|lean_hvset,clean_prepared,offload|5
3
+ budget|immicro|1|lean_hvset,clean_prepared,offload|5
4
+ budget|immicro|2|lean_hvset,clean_prepared,offload|5
5
+ budget|immicro|3|lean_hvset,clean_prepared,offload|5
6
+ budget|immicro|4|lean_hvset,clean_prepared,offload|5
7
+ budget|immicro|0|lean_hvset,clean_prepared,offload|10
8
+ budget|immicro|1|lean_hvset,clean_prepared,offload|10
9
+ budget|immicro|2|lean_hvset,clean_prepared,offload|10
10
+ budget|immicro|3|lean_hvset,clean_prepared,offload|10
11
+ budget|immicro|4|lean_hvset,clean_prepared,offload|10
12
+ budget|immicro|0|lean_hvset,clean_prepared,offload|20
13
+ budget|immicro|1|lean_hvset,clean_prepared,offload|20
14
+ budget|immicro|2|lean_hvset,clean_prepared,offload|20
15
+ budget|immicro|3|lean_hvset,clean_prepared,offload|20
16
+ budget|immicro|4|lean_hvset,clean_prepared,offload|20
17
+ budget|immicro|0|lean_hvset,clean_prepared,offload|40
18
+ budget|immicro|1|lean_hvset,clean_prepared,offload|40
19
+ budget|immicro|2|lean_hvset,clean_prepared,offload|40
20
+ budget|immicro|3|lean_hvset,clean_prepared,offload|40
21
+ budget|immicro|4|lean_hvset,clean_prepared,offload|40
22
+ budget|ye2026_sepsis|0|lean_hvset,clean_prepared,offload|5
23
+ budget|ye2026_sepsis|1|lean_hvset,clean_prepared,offload|5
24
+ budget|ye2026_sepsis|2|lean_hvset,clean_prepared,offload|5
25
+ budget|ye2026_sepsis|3|lean_hvset,clean_prepared,offload|5
26
+ budget|ye2026_sepsis|4|lean_hvset,clean_prepared,offload|5
27
+ budget|ye2026_sepsis|0|lean_hvset,clean_prepared,offload|10
28
+ budget|ye2026_sepsis|1|lean_hvset,clean_prepared,offload|10
29
+ budget|ye2026_sepsis|2|lean_hvset,clean_prepared,offload|10
30
+ budget|ye2026_sepsis|3|lean_hvset,clean_prepared,offload|10
31
+ budget|ye2026_sepsis|4|lean_hvset,clean_prepared,offload|10
32
+ budget|ye2026_sepsis|0|lean_hvset,clean_prepared,offload|20
33
+ budget|ye2026_sepsis|1|lean_hvset,clean_prepared,offload|20
34
+ budget|ye2026_sepsis|2|lean_hvset,clean_prepared,offload|20
35
+ budget|ye2026_sepsis|3|lean_hvset,clean_prepared,offload|20
36
+ budget|ye2026_sepsis|4|lean_hvset,clean_prepared,offload|20
37
+ budget|ye2026_sepsis|0|lean_hvset,clean_prepared,offload|40
38
+ budget|ye2026_sepsis|1|lean_hvset,clean_prepared,offload|40
39
+ budget|ye2026_sepsis|2|lean_hvset,clean_prepared,offload|40
40
+ budget|ye2026_sepsis|3|lean_hvset,clean_prepared,offload|40
41
+ budget|ye2026_sepsis|4|lean_hvset,clean_prepared,offload|40
paper-releases/pbisc-diffusion/updates/20261002T002920Z-deck-extra-metrics-scsemi-prep/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_cv_budget_20261002.txt ADDED
@@ -0,0 +1,69 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # scSemiProfiler A (5-fold CV, representatives = LoRA real_lora train + inner-val rows) and B (equal pair budget,
2
+ # representatives = lora_n<n> train + inner-val rows, pretraining reused from A of the same fold), server_1, 2026-10-02
3
+ cv|ji2025_chili|0|lean_hvset,clean_prepared,offload
4
+ cv|ji2025_chili|1|lean_hvset,clean_prepared,offload
5
+ cv|ji2025_chili|2|lean_hvset,clean_prepared,offload
6
+ cv|ji2025_chili|3|lean_hvset,clean_prepared,offload
7
+ cv|ji2025_chili|4|lean_hvset,clean_prepared,offload
8
+ cv|immicro|0|lean_hvset,clean_prepared
9
+ cv|immicro|1|lean_hvset,clean_prepared
10
+ cv|immicro|2|lean_hvset,clean_prepared
11
+ cv|immicro|3|lean_hvset,clean_prepared
12
+ cv|immicro|4|lean_hvset,clean_prepared
13
+ budget|immicro|0|reuse_cv,clean_prepared,offload|5
14
+ budget|immicro|1|reuse_cv,clean_prepared,offload|5
15
+ budget|immicro|2|reuse_cv,clean_prepared,offload|5
16
+ budget|immicro|3|reuse_cv,clean_prepared,offload|5
17
+ budget|immicro|4|reuse_cv,clean_prepared,offload|5
18
+ budget|immicro|0|reuse_cv,clean_prepared,offload|10
19
+ budget|immicro|1|reuse_cv,clean_prepared,offload|10
20
+ budget|immicro|2|reuse_cv,clean_prepared,offload|10
21
+ budget|immicro|3|reuse_cv,clean_prepared,offload|10
22
+ budget|immicro|4|reuse_cv,clean_prepared,offload|10
23
+ budget|immicro|0|reuse_cv,clean_prepared,offload|20
24
+ budget|immicro|1|reuse_cv,clean_prepared,offload|20
25
+ budget|immicro|2|reuse_cv,clean_prepared,offload|20
26
+ budget|immicro|3|reuse_cv,clean_prepared,offload|20
27
+ budget|immicro|4|reuse_cv,clean_prepared,offload|20
28
+ budget|immicro|0|reuse_cv,clean_prepared,offload|40
29
+ budget|immicro|1|reuse_cv,clean_prepared,offload|40
30
+ budget|immicro|2|reuse_cv,clean_prepared,offload|40
31
+ budget|immicro|3|reuse_cv,clean_prepared,offload|40
32
+ budget|immicro|4|reuse_cv,clean_prepared,offload|40
33
+ offload|immicro|cv
34
+ cv|ye2026_sepsis|0|lean_hvset,clean_prepared
35
+ cv|ye2026_sepsis|1|lean_hvset,clean_prepared
36
+ cv|ye2026_sepsis|2|lean_hvset,clean_prepared
37
+ cv|ye2026_sepsis|3|lean_hvset,clean_prepared
38
+ cv|ye2026_sepsis|4|lean_hvset,clean_prepared
39
+ budget|ye2026_sepsis|0|reuse_cv,clean_prepared,offload|5
40
+ budget|ye2026_sepsis|1|reuse_cv,clean_prepared,offload|5
41
+ budget|ye2026_sepsis|2|reuse_cv,clean_prepared,offload|5
42
+ budget|ye2026_sepsis|3|reuse_cv,clean_prepared,offload|5
43
+ budget|ye2026_sepsis|4|reuse_cv,clean_prepared,offload|5
44
+ budget|ye2026_sepsis|0|reuse_cv,clean_prepared,offload|10
45
+ budget|ye2026_sepsis|1|reuse_cv,clean_prepared,offload|10
46
+ budget|ye2026_sepsis|2|reuse_cv,clean_prepared,offload|10
47
+ budget|ye2026_sepsis|3|reuse_cv,clean_prepared,offload|10
48
+ budget|ye2026_sepsis|4|reuse_cv,clean_prepared,offload|10
49
+ budget|ye2026_sepsis|0|reuse_cv,clean_prepared,offload|20
50
+ budget|ye2026_sepsis|1|reuse_cv,clean_prepared,offload|20
51
+ budget|ye2026_sepsis|2|reuse_cv,clean_prepared,offload|20
52
+ budget|ye2026_sepsis|3|reuse_cv,clean_prepared,offload|20
53
+ budget|ye2026_sepsis|4|reuse_cv,clean_prepared,offload|20
54
+ budget|ye2026_sepsis|0|reuse_cv,clean_prepared,offload|40
55
+ budget|ye2026_sepsis|1|reuse_cv,clean_prepared,offload|40
56
+ budget|ye2026_sepsis|2|reuse_cv,clean_prepared,offload|40
57
+ budget|ye2026_sepsis|3|reuse_cv,clean_prepared,offload|40
58
+ budget|ye2026_sepsis|4|reuse_cv,clean_prepared,offload|40
59
+ offload|ye2026_sepsis|cv
60
+ cv|giroux2022|0|lean_hvset,clean_prepared,offload
61
+ cv|giroux2022|1|lean_hvset,clean_prepared,offload
62
+ cv|giroux2022|2|lean_hvset,clean_prepared,offload
63
+ cv|giroux2022|3|lean_hvset,clean_prepared,offload
64
+ cv|giroux2022|4|lean_hvset,clean_prepared,offload
65
+ cv|imperial_eskd|0|lean_hvset,clean_prepared,offload
66
+ cv|imperial_eskd|1|lean_hvset,clean_prepared,offload
67
+ cv|imperial_eskd|2|lean_hvset,clean_prepared,offload
68
+ cv|imperial_eskd|3|lean_hvset,clean_prepared,offload
69
+ cv|imperial_eskd|4|lean_hvset,clean_prepared,offload
paper-releases/pbisc-diffusion/updates/20261002T002920Z-deck-extra-metrics-scsemi-prep/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_cv_budget_20261002_userorder.txt ADDED
@@ -0,0 +1,68 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # same units as server1_cv_budget_20261002.txt in the order first requested (B n-major across both cohorts)
2
+ cv|ji2025_chili|0|lean_hvset,clean_prepared,offload
3
+ cv|ji2025_chili|1|lean_hvset,clean_prepared,offload
4
+ cv|ji2025_chili|2|lean_hvset,clean_prepared,offload
5
+ cv|ji2025_chili|3|lean_hvset,clean_prepared,offload
6
+ cv|ji2025_chili|4|lean_hvset,clean_prepared,offload
7
+ cv|giroux2022|0|lean_hvset,clean_prepared,offload
8
+ cv|giroux2022|1|lean_hvset,clean_prepared,offload
9
+ cv|giroux2022|2|lean_hvset,clean_prepared,offload
10
+ cv|giroux2022|3|lean_hvset,clean_prepared,offload
11
+ cv|giroux2022|4|lean_hvset,clean_prepared,offload
12
+ cv|ye2026_sepsis|0|lean_hvset,clean_prepared
13
+ cv|ye2026_sepsis|1|lean_hvset,clean_prepared
14
+ cv|ye2026_sepsis|2|lean_hvset,clean_prepared
15
+ cv|ye2026_sepsis|3|lean_hvset,clean_prepared
16
+ cv|ye2026_sepsis|4|lean_hvset,clean_prepared
17
+ cv|immicro|0|lean_hvset,clean_prepared
18
+ cv|immicro|1|lean_hvset,clean_prepared
19
+ cv|immicro|2|lean_hvset,clean_prepared
20
+ cv|immicro|3|lean_hvset,clean_prepared
21
+ cv|immicro|4|lean_hvset,clean_prepared
22
+ budget|immicro|0|reuse_cv,clean_prepared,offload|5
23
+ budget|immicro|1|reuse_cv,clean_prepared,offload|5
24
+ budget|immicro|2|reuse_cv,clean_prepared,offload|5
25
+ budget|immicro|3|reuse_cv,clean_prepared,offload|5
26
+ budget|immicro|4|reuse_cv,clean_prepared,offload|5
27
+ budget|ye2026_sepsis|0|reuse_cv,clean_prepared,offload|5
28
+ budget|ye2026_sepsis|1|reuse_cv,clean_prepared,offload|5
29
+ budget|ye2026_sepsis|2|reuse_cv,clean_prepared,offload|5
30
+ budget|ye2026_sepsis|3|reuse_cv,clean_prepared,offload|5
31
+ budget|ye2026_sepsis|4|reuse_cv,clean_prepared,offload|5
32
+ budget|immicro|0|reuse_cv,clean_prepared,offload|10
33
+ budget|immicro|1|reuse_cv,clean_prepared,offload|10
34
+ budget|immicro|2|reuse_cv,clean_prepared,offload|10
35
+ budget|immicro|3|reuse_cv,clean_prepared,offload|10
36
+ budget|immicro|4|reuse_cv,clean_prepared,offload|10
37
+ budget|ye2026_sepsis|0|reuse_cv,clean_prepared,offload|10
38
+ budget|ye2026_sepsis|1|reuse_cv,clean_prepared,offload|10
39
+ budget|ye2026_sepsis|2|reuse_cv,clean_prepared,offload|10
40
+ budget|ye2026_sepsis|3|reuse_cv,clean_prepared,offload|10
41
+ budget|ye2026_sepsis|4|reuse_cv,clean_prepared,offload|10
42
+ budget|immicro|0|reuse_cv,clean_prepared,offload|20
43
+ budget|immicro|1|reuse_cv,clean_prepared,offload|20
44
+ budget|immicro|2|reuse_cv,clean_prepared,offload|20
45
+ budget|immicro|3|reuse_cv,clean_prepared,offload|20
46
+ budget|immicro|4|reuse_cv,clean_prepared,offload|20
47
+ budget|ye2026_sepsis|0|reuse_cv,clean_prepared,offload|20
48
+ budget|ye2026_sepsis|1|reuse_cv,clean_prepared,offload|20
49
+ budget|ye2026_sepsis|2|reuse_cv,clean_prepared,offload|20
50
+ budget|ye2026_sepsis|3|reuse_cv,clean_prepared,offload|20
51
+ budget|ye2026_sepsis|4|reuse_cv,clean_prepared,offload|20
52
+ budget|immicro|0|reuse_cv,clean_prepared,offload|40
53
+ budget|immicro|1|reuse_cv,clean_prepared,offload|40
54
+ budget|immicro|2|reuse_cv,clean_prepared,offload|40
55
+ budget|immicro|3|reuse_cv,clean_prepared,offload|40
56
+ budget|immicro|4|reuse_cv,clean_prepared,offload|40
57
+ budget|ye2026_sepsis|0|reuse_cv,clean_prepared,offload|40
58
+ budget|ye2026_sepsis|1|reuse_cv,clean_prepared,offload|40
59
+ budget|ye2026_sepsis|2|reuse_cv,clean_prepared,offload|40
60
+ budget|ye2026_sepsis|3|reuse_cv,clean_prepared,offload|40
61
+ budget|ye2026_sepsis|4|reuse_cv,clean_prepared,offload|40
62
+ offload|immicro|cv
63
+ offload|ye2026_sepsis|cv
64
+ cv|imperial_eskd|0|lean_hvset,clean_prepared,offload
65
+ cv|imperial_eskd|1|lean_hvset,clean_prepared,offload
66
+ cv|imperial_eskd|2|lean_hvset,clean_prepared,offload
67
+ cv|imperial_eskd|3|lean_hvset,clean_prepared,offload
68
+ cv|imperial_eskd|4|lean_hvset,clean_prepared,offload