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  1. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_cv3.log +73 -0
  2. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_cv4.log +81 -0
  3. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_fewshot0.log +191 -0
  4. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_fewshot1.log +192 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_cv3.log ADDED
@@ -0,0 +1,73 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 19656 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >51709 DEG expressed across 6 samples were identified
32
+ >Group size: 500, Kappa: 19.2614679694143
33
+ >Best kappa: 19.2614679694143
34
+ >SVD UpperRightDiag: 95591.2
35
+ >SVD LowerRightDiag: 4962.82
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.0596931 0 0.287139 0.0269527 0.040376 0.585839 9999 4.16667
51
+ 2 0.00291327 0.0641649 0.452369 0.0284206 0.0500177 0.402115 9999 8.33333
52
+ 3 0 0.0594086 0.489078 0.0247644 0.0909554 0.335793 9999 12.5
53
+ 4 0.109271 0 0.64679 0 0.0634497 0.18049 9999 16.6667
54
+ 5 0.123364 0.0718531 0.296221 0.0185938 0.0688581 0.42111 9999 20.8333
55
+ 6 0.113824 0.0464674 0.256785 0 0.070852 0.512071 9999 25
56
+ 7 0.10023 0.169655 0.206982 0.0751058 0.0650586 0.382969 9999 29.1667
57
+ 8 0.165693 0.0184752 0.176891 0.0689377 0.00729391 0.562709 9999 33.3333
58
+ 9 0.113371 0.0745297 0.209921 0.111877 0.0232779 0.467024 9999 37.5
59
+ 10 0.211931 0 0.162018 0 0.0178061 0.608245 9999 41.6667
60
+ 11 0.0259865 0.150276 0.181278 0.0918685 0.0136194 0.536972 9999 45.8333
61
+ 12 0.153042 0.123429 0.302642 0.0915186 0.0122213 0.317147 9999 50
62
+ 13 0.164817 0.0911944 0.357797 0.0827876 0.0609356 0.242468 9999 54.1667
63
+ 14 0.131825 0.0575003 0.374257 0.18144 0.0272817 0.227695 9999 58.3333
64
+ 15 0.119394 0.0272299 0.515489 0.0824454 0.0505549 0.204887 9999 62.5
65
+ 16 0.153193 0.0494343 0.385051 0.0557335 0.0539642 0.302623 9999 66.6667
66
+ 17 0.156342 0.0641661 0.372693 0.12873 0.0698895 0.20818 9999 70.8333
67
+ 18 0.0141807 0.121905 0.212804 0.177001 0.00641263 0.467697 9999 75
68
+ 19 0.0347947 0.043347 0.28835 0.262901 0.0222503 0.348357 9999 79.1667
69
+ 20 0.105588 0.0346221 0.169637 0.184228 0.0578604 0.448064 9999 83.3333
70
+ 21 0.0837773 0.0559285 0.143022 0.213053 0.0774628 0.426756 9999 87.5
71
+ 22 0.0505307 0.0646274 0.143362 0.221983 0.0609277 0.45857 9999 91.6667
72
+ 23 0.038936 0.144544 0.147253 0.234631 0.0259596 0.408677 9999 95.8333
73
+ 24 0.128084 0.0206225 0.379578 0.121547 0.0672649 0.282903 9999 100
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_cv4.log ADDED
@@ -0,0 +1,81 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 19656 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >51807 DEG expressed across 6 samples were identified
32
+ >Group size: 500, Kappa: 41.3214745511455
33
+ >Best kappa: 41.3214745511455
34
+ >SVD UpperRightDiag: 183830
35
+ >SVD LowerRightDiag: 4448.78
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.186703 0.0205915 0.554608 0.0711086 0.0348492 0.13214 9999 3.125
51
+ 2 0.172456 0 0.463489 0.203751 0.0292121 0.131092 9999 6.25
52
+ 3 0 0.068876 0.353809 0 0.0377036 0.539612 9999 9.375
53
+ 4 0.054243 0.0559838 0.250096 0 0.0527918 0.586885 9999 12.5
54
+ 5 0.039177 0.127 0.241335 0 0.0444404 0.548047 9999 15.625
55
+ 6 0.102385 0.0475313 0.385701 0.0393323 0.0518071 0.373244 9999 18.75
56
+ 7 0.0238128 0.047207 0.29277 0.0948577 0.0856432 0.455709 9999 21.875
57
+ 8 0.083911 0.0251154 0.476202 0.0290383 0.0717321 0.314001 9999 25
58
+ 9 0 0.0703015 0.341439 0.180513 0.0493753 0.358372 9999 28.125
59
+ 10 0.00153304 0.039193 0.508811 0.0486623 0.0904993 0.311302 9999 31.25
60
+ 11 0 0.106728 0.325218 0.0426805 0.138002 0.387371 9999 34.375
61
+ 12 0 0.152816 0.259885 0.0371098 0.0599697 0.490219 9999 37.5
62
+ 13 0 0.109308 0.249767 0.109745 0.0652133 0.465967 9999 40.625
63
+ 14 0.00604224 0.14566 0.310188 0.0402951 0.0442742 0.453541 9999 43.75
64
+ 15 0.0240608 0 0.415647 0 0.0399643 0.520328 9999 46.875
65
+ 16 0.0133077 0.145284 0.474953 0.130162 0.00606215 0.230231 9999 50
66
+ 17 0 0.144806 0.365374 0.151478 0.0807152 0.257627 9999 53.125
67
+ 18 0 0.168054 0.280606 0.129551 0.0400772 0.381713 9999 56.25
68
+ 19 0.0885957 0.134061 0.151038 0.169921 0.0160473 0.440337 9999 59.375
69
+ 20 0.0175484 0.13876 0.24821 0.114501 0.0956692 0.385312 9999 62.5
70
+ 21 0.0582598 0.0493555 0.265959 0.0923441 0.0358668 0.498215 9999 65.625
71
+ 22 0.0622815 0.0429291 0.206966 0.280106 0.0434805 0.364237 9999 68.75
72
+ 23 0.0684202 0.0872129 0.148378 0.175844 0.0867133 0.433432 9999 71.875
73
+ 24 0.0532529 0.0621759 0.112083 0.142014 0.176184 0.454291 9999 75
74
+ 25 0.0255135 0.0364141 0.378043 0.172834 0.0787917 0.308403 9999 78.125
75
+ 26 0.0276726 0 0.618487 0.173884 0.0484157 0.131541 9999 81.25
76
+ 27 0.0237547 0 0.625974 0.159523 0.0557731 0.134975 9999 84.375
77
+ 28 0.0559105 0.0270582 0.546256 0.151714 0.120714 0.0983468 9999 87.5
78
+ 29 0.039764 0.00688662 0.497947 0.148712 0.110094 0.196597 9999 90.625
79
+ 30 0.0217801 0.104038 0.358028 0.0630134 0.125548 0.327592 9999 93.75
80
+ 31 0.0408129 0.11175 0.21866 0 0.0599003 0.568876 9999 96.875
81
+ 32 0.00937267 0.126506 0.257184 0.068301 0.0465982 0.492038 9999 100
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_fewshot0.log ADDED
@@ -0,0 +1,191 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 19656 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >51039 DEG expressed across 6 samples were identified
32
+ >Group size: 500, Kappa: 11.6308541359722
33
+ >Best kappa: 11.6308541359722
34
+ >SVD UpperRightDiag: 54116.6
35
+ >SVD LowerRightDiag: 4652.85
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.12491 0 0.652832 0.0723967 0.0309492 0.118912 9999 0.704225
51
+ 2 0.108759 0 0.550665 0.204035 0.0299988 0.106542 9999 1.40845
52
+ 3 0.0397637 0 0.1898 0 0.0470685 0.723367 9999 2.11268
53
+ 4 0 0 0.393778 0 0.114258 0.491964 9999 2.8169
54
+ 5 0.0574727 0 0.53343 0 0.104076 0.305022 9999 3.52113
55
+ 6 0.0182454 0.150885 0.303411 0.0622376 0.0383268 0.426894 9999 4.22535
56
+ 7 0.0878902 0.0618795 0.160981 0 0.0095934 0.679656 9999 4.92958
57
+ 8 0.0246987 0.107628 0.295372 0 0.0177077 0.554594 9999 5.6338
58
+ 9 0 0.127627 0.220028 0 0.0205296 0.631815 9999 6.33803
59
+ 10 0 0.0376993 0.509046 0.31001 0.0415245 0.10172 9999 7.04225
60
+ 11 0 0 0.548523 0.365851 0.0376332 0.0479929 9999 7.74648
61
+ 12 0 0 0.471529 0.361705 0.0731136 0.0936528 9999 8.4507
62
+ 13 0.00897296 0.153168 0.474338 0 0.0485981 0.314923 9999 9.15493
63
+ 14 0 0.252016 0.32545 0 0.0103438 0.41219 9999 9.85915
64
+ 15 0 0.266729 0.269641 0 0.00272581 0.460905 9999 10.5634
65
+ 16 0 0.0700921 0.39894 0.0205789 0.0290726 0.481317 9999 11.2676
66
+ 17 0.0246249 0.0563651 0.295761 0.0319715 0.0428928 0.548385 9999 11.9718
67
+ 18 0.0164421 0.100161 0.312526 0.03291 0.0204914 0.517469 9999 12.6761
68
+ 19 0.0603378 0.0491184 0.479092 0.0801963 0.0310397 0.300216 9999 13.3803
69
+ 20 0 0.0382288 0.379493 0.104632 0.0649372 0.412709 9999 14.0845
70
+ 21 0.0407812 0.0212194 0.587396 0.0621007 0.0450357 0.243467 9999 14.7887
71
+ 22 0.0831139 0 0.304226 0 0.0219179 0.590742 9999 15.493
72
+ 23 0.101017 0 0.26835 0 0.0275974 0.603036 9999 16.1972
73
+ 24 0.110759 0 0.33877 0 0.00125775 0.549214 9999 16.9014
74
+ 25 0 0 0.271942 0.031779 0.0223481 0.673931 9999 17.6056
75
+ 26 0.0497315 0 0.463408 0.039046 0.0602569 0.387558 9999 18.3099
76
+ 27 0.0368749 0 0.272142 0 0.0338408 0.657142 9999 19.0141
77
+ 28 0.0840739 0.0106974 0.293993 0.0181559 0.0459462 0.547133 9999 19.7183
78
+ 29 0.0470317 0 0.541727 0.225886 0.0422036 0.143152 9999 20.4225
79
+ 30 0.0480718 0 0.590737 0.172243 0.0536442 0.135304 9999 21.1268
80
+ 31 0 0 0.361433 0.149588 0.141956 0.347024 9999 21.831
81
+ 32 0 0.0833577 0.450257 0.0385975 0.0165205 0.411267 9999 22.5352
82
+ 33 0 0 0.489921 0.00964727 0.0210694 0.479362 9999 23.2394
83
+ 34 0 0.0578669 0.503208 0.0565795 0.0483649 0.333981 9999 23.9437
84
+ 35 0 0.130308 0.533341 0.147775 0.00608557 0.182491 9999 24.6479
85
+ 36 0 0.164299 0.403885 0.15421 0.0466906 0.230915 9999 25.3521
86
+ 37 0 0.176126 0.322943 0.159672 0.0146672 0.326591 9999 26.0563
87
+ 38 0.0213637 0 0.573626 0.0968865 0.0946998 0.213424 9999 26.7606
88
+ 39 0 0 0.678117 0.0660205 0.0670749 0.188787 9999 27.4648
89
+ 40 0 0 0.532738 0.00654737 0.148663 0.312052 9999 28.169
90
+ 41 0.0121884 0 0.493759 0.00572419 0.127974 0.360355 9999 28.8732
91
+ 42 0.0734111 0 0.524921 0.0830772 0.0510289 0.267561 9999 29.5775
92
+ 43 0.0359451 0 0.551903 0.0518887 0.0963541 0.263909 9999 30.2817
93
+ 44 0.112241 0.0866578 0.279384 0.187387 0.0488256 0.285504 9999 30.9859
94
+ 45 0.0523625 0.137078 0.305676 0.210568 0.037355 0.256961 9999 31.6901
95
+ 46 0 0.165367 0.160258 0 0.0247984 0.649576 9999 32.3944
96
+ 47 0.0226528 0.0581142 0.564274 0.151599 0.0330324 0.170328 9999 33.0986
97
+ 48 0.00278458 0.00773463 0.52742 0.163495 0.0624096 0.236157 9999 33.8028
98
+ 49 0 0.000579274 0.549789 0.085031 0.108219 0.256382 9999 34.507
99
+ 50 0.0741774 0 0.690732 0 0.0377541 0.197336 9999 35.2113
100
+ 51 0.0709999 0 0.362886 0.252614 0.200271 0.113229 9999 35.9155
101
+ 52 0.0157908 0 0.53648 0.137926 0.272755 0.037048 9999 36.6197
102
+ 53 0.0191164 0 0.68947 0.0766412 0.0930326 0.121739 9999 37.3239
103
+ 54 0.0353858 0 0.534182 0.141244 0.114094 0.175094 9999 38.0282
104
+ 55 0.0443641 0.0273799 0.417912 0.166592 0.130995 0.212757 9999 38.7324
105
+ 56 0.0223919 0.0301298 0.365919 0.148766 0.0811415 0.351652 9999 39.4366
106
+ 57 0 0 0.42982 0.175291 0.10239 0.2925 9999 40.1408
107
+ 58 0.0291175 0.0297956 0.332017 0.274093 0.0350381 0.299938 9999 40.8451
108
+ 59 0.041107 0.0274487 0.299833 0.258458 0.0142621 0.358892 9999 41.5493
109
+ 60 0.0130884 0.0635381 0.459291 0.128233 0 0.335849 9999 42.2535
110
+ 61 0.000322945 0.0261806 0.455157 0.136432 0.0103658 0.371542 9999 42.9577
111
+ 62 0 0.149343 0.291694 0.0968877 0 0.462076 9999 43.662
112
+ 63 0.100215 0.0453971 0.168842 0.0881957 0 0.597349 9999 44.3662
113
+ 64 0.0872159 0.0773548 0.203844 0.15312 0.00537434 0.473091 9999 45.0704
114
+ 65 0.169364 0 0.174894 0.0191439 0 0.636598 9999 45.7746
115
+ 66 0.0560372 0.10524 0.378368 0.0771052 0.00622384 0.377026 9999 46.4789
116
+ 67 0.0539344 0.125337 0.456468 0.0243607 0.0768615 0.263039 9999 47.1831
117
+ 68 0 0.171155 0.381408 0.132036 0.0180827 0.297318 9999 47.8873
118
+ 69 0 0.00310963 0.563882 0.200244 0.0906258 0.142139 9999 48.5915
119
+ 70 0.0147042 0 0.831447 0.0656568 0.0605456 0.0276467 9999 49.2958
120
+ 71 0.0421999 0.0198533 0.685537 0.0553361 0.0670465 0.130027 9999 50
121
+ 72 0.0126109 0 0.731434 0.0271775 0.0766021 0.152175 9999 50.7042
122
+ 73 0.336369 0 0.175974 0.0106061 0.0101163 0.466935 9999 51.4085
123
+ 74 0.173051 0.0479147 0.557103 0.0662692 0.0118659 0.143796 9999 52.1127
124
+ 75 0.278701 0.0220539 0.380369 0.133919 0.0282241 0.156733 9999 52.8169
125
+ 76 0.26474 0.00573644 0.258293 0.0855339 0.0057899 0.379907 9999 53.5211
126
+ 77 0.22819 0 0.155695 0.0913588 0.0366182 0.488138 9999 54.2254
127
+ 78 0.217001 0.0978571 0.308012 0.0754347 0.00645997 0.295235 9999 54.9296
128
+ 79 0.198729 0.0776217 0.261034 0.0650817 0.00461736 0.392916 9999 55.6338
129
+ 80 0.269345 0 0.269567 0.0265543 0.0259704 0.408563 9999 56.338
130
+ 81 0.086292 0.0947581 0.213636 0.206034 0.00994539 0.389335 9999 57.0423
131
+ 82 0.0859235 0.111024 0.203283 0.0372796 0.020958 0.541532 9999 57.7465
132
+ 83 0.050999 0.0325388 0.416522 0.2186 0.0785488 0.202791 9999 58.4507
133
+ 84 0.0367565 0 0.323678 0.265172 0.148106 0.226288 9999 59.1549
134
+ 85 0.105198 0 0.497868 0.14176 0.123514 0.131659 9999 59.8592
135
+ 86 0.0503682 0.102951 0.505992 0.0975298 0.0965836 0.146575 9999 60.5634
136
+ 87 0.0675217 0.0937553 0.469657 0.102352 0.0306184 0.236096 9999 61.2676
137
+ 88 0 0.123166 0.245214 0.144956 0.0174039 0.46926 9999 61.9718
138
+ 89 0 0.034585 0.463941 0.225888 0.0205322 0.255053 9999 62.6761
139
+ 90 0 0.0550621 0.346911 0.241835 0.00725515 0.348937 9999 63.3803
140
+ 91 0.0253258 0 0.573691 0.176299 0.0371379 0.187547 9999 64.0845
141
+ 92 0 0.00263298 0.469069 0.164464 0.0551821 0.308651 9999 64.7887
142
+ 93 0.0126793 0 0.641589 0.113804 0.0417468 0.19018 9999 65.493
143
+ 94 0.0472183 0 0.754172 0.00505883 0.0187779 0.174773 9999 66.1972
144
+ 95 0 0.0862583 0.259528 0.102768 0.0438059 0.507639 9999 66.9014
145
+ 96 0.0970014 0.0848753 0.306033 0.0627676 0.0241372 0.425185 9999 67.6056
146
+ 97 0.0300343 0 0.609765 0.174407 0.0637858 0.122007 9999 68.3099
147
+ 98 0 0.0850155 0.453609 0.0951401 0.0904148 0.27582 9999 69.0141
148
+ 99 0.0113163 0.0428184 0.0598099 0.403724 0 0.482331 9999 69.7183
149
+ 100 0.0694622 0 0.742285 0 0.0116633 0.17659 9999 70.4225
150
+ 101 0.0150277 0.134166 0.178915 0.133289 0 0.538602 9999 71.1268
151
+ 102 0.0409728 0.0139678 0.191158 0.261212 0.0119078 0.480782 9999 71.831
152
+ 103 0.089341 0.1502 0.291304 0.128309 0.00183205 0.339015 9999 72.5352
153
+ 104 0.158349 0.0561936 0.429084 0.0913875 0.0278683 0.237118 9999 73.2394
154
+ 105 0.0600241 0.0925939 0.422123 0.197244 0.0082176 0.219798 9999 73.9437
155
+ 106 0.0760961 0.0673801 0.519815 0.103784 0.0294902 0.203435 9999 74.6479
156
+ 107 0.0780258 0.108836 0.410722 0.0707155 0.0279367 0.303764 9999 75.3521
157
+ 108 0.0835096 0.09847 0.423959 0.158177 0.0337231 0.202161 9999 76.0563
158
+ 109 0.0139191 0.109222 0.332083 0.135874 0.0593242 0.349579 9999 76.7606
159
+ 110 0.0352515 0.044397 0.329606 0.139291 0.0305639 0.42089 9999 77.4648
160
+ 111 0.0413371 0.0359604 0.266652 0.314608 0.0348109 0.306632 9999 78.169
161
+ 112 0.0313352 0.0679178 0.203779 0.205089 0.0784519 0.413428 9999 78.8732
162
+ 113 0.0277019 0.0618522 0.163555 0.195887 0.12284 0.428163 9999 79.5775
163
+ 114 0 0.108603 0.207096 0.211575 0 0.472725 9999 80.2817
164
+ 115 0 0.0646984 0.298348 0.303439 0.00744519 0.32607 9999 80.9859
165
+ 116 0.0724061 0.0498784 0.175464 0.224428 0.0320887 0.445735 9999 81.6901
166
+ 117 0 0.0669416 0.150779 0.289368 0.0390923 0.45382 9999 82.3944
167
+ 118 0.0204793 0.0534096 0.162058 0.26474 0.0252075 0.474106 9999 83.0986
168
+ 119 0 0.0785811 0.479858 0.157329 0.0383774 0.245855 9999 83.8028
169
+ 120 0.0225749 0 0.676717 0.160081 0.0383714 0.102256 9999 84.507
170
+ 121 0.0150168 0 0.700104 0.144663 0.0423158 0.0978996 9999 85.2113
171
+ 122 0.0445516 0.0153833 0.627281 0.145414 0.0894951 0.0778745 9999 85.9155
172
+ 123 0.013399 0 0.598709 0.180527 0.0680682 0.139297 9999 86.6197
173
+ 124 0 0.101899 0.439445 0.0768997 0.0892072 0.292549 9999 87.3239
174
+ 125 0.0481796 0.0846692 0.669629 0.0763874 0.0433636 0.0777712 9999 88.0282
175
+ 126 0.16572 0.0304767 0.646673 0.0421211 0.036533 0.0784766 9999 88.7324
176
+ 127 0.28295 0 0.364127 0.0587771 0.028378 0.265768 9999 89.4366
177
+ 128 0.356662 0.00917256 0.335402 0.0478494 0.0480129 0.202901 9999 90.1408
178
+ 129 0.281868 0 0.371685 0.0642126 0.0579956 0.224239 9999 90.8451
179
+ 130 0.193818 0.0527279 0.49094 0.0604702 0.0441925 0.157851 9999 91.5493
180
+ 131 0.140775 0.0330156 0.555321 0.0531032 0.0553705 0.162414 9999 92.2535
181
+ 132 0.165209 0.0271483 0.544364 0.0164415 0.04683 0.200007 9999 92.9577
182
+ 133 0 0.152798 0.389225 0.0594466 0.0287619 0.369769 9999 93.662
183
+ 134 0.0287362 0.121874 0.153617 0.302925 0.00702871 0.385819 9999 94.3662
184
+ 135 0.0261314 0.012499 0.447184 0.113794 0.0280822 0.372309 9999 95.0704
185
+ 136 0.036351 0.171609 0.31733 0.0623411 0.0151199 0.397249 9999 95.7746
186
+ 137 0.0119754 0.101376 0.273697 0 0.0378313 0.57512 9999 96.4789
187
+ 138 0.013448 0.115768 0.306759 0.100623 0.0243243 0.439078 9999 97.1831
188
+ 139 0 0.0517174 0.337915 0 0.0112332 0.599135 9999 97.8873
189
+ 140 0.0220395 0.0343545 0.369608 0.068787 0.00200282 0.503208 9999 98.5915
190
+ 141 0 0.0737925 0.204808 0.0724835 0 0.648916 9999 99.2958
191
+ 142 0.0692513 0.0760484 0.193226 0 0.00958446 0.65189 9999 100
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_fewshot1.log ADDED
@@ -0,0 +1,192 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 19656 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >50894 DEG expressed across 6 samples were identified
32
+ >Group size: 478, Kappa: 10.1565962081979
33
+ >Best kappa: 10.1565962081979
34
+ >SVD UpperRightDiag: 46742.9
35
+ >SVD LowerRightDiag: 4602.22
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.140709 0.016851 0.634859 0.0627805 0.0310199 0.113781 9999 0.699301
51
+ 2 0.140702 0 0.544708 0.170532 0.0293671 0.114692 9999 1.3986
52
+ 3 0.0812953 0 0.169859 0 0.0600405 0.688806 9999 2.0979
53
+ 4 0.0818653 0 0.338052 0 0.13068 0.449402 9999 2.7972
54
+ 5 0.0685951 0.00362852 0.45165 0 0.142393 0.333733 9999 3.4965
55
+ 6 0.00920289 0.282037 0.196259 0.0327087 0.0395504 0.440243 9999 4.1958
56
+ 7 0 0.0639405 0.47201 0.342978 0.0449443 0.0761273 9999 4.8951
57
+ 8 0 0 0.52545 0.402958 0.0428779 0.0287143 9999 5.59441
58
+ 9 0 0 0.440529 0.403358 0.0841701 0.0719424 9999 6.29371
59
+ 10 0 0.231132 0.443119 0 0.0406704 0.285079 9999 6.99301
60
+ 11 0 0.324813 0.277407 0 0.00884794 0.388932 9999 7.69231
61
+ 12 0 0.295035 0.216689 0 0.000552286 0.487724 9999 8.39161
62
+ 13 0 0.104685 0.36209 0 0.0328858 0.50034 9999 9.09091
63
+ 14 0.0284507 0.0970819 0.236159 0 0.057899 0.580409 9999 9.79021
64
+ 15 0.00766627 0.135915 0.292912 0.00339548 0.0282298 0.531882 9999 10.4895
65
+ 16 0.0746488 0.0624211 0.436801 0.0447092 0.0293712 0.352049 9999 11.1888
66
+ 17 0.031921 0.0630484 0.313866 0.0965837 0.064208 0.430373 9999 11.8881
67
+ 18 0.0552229 0.0409116 0.53645 0.0423947 0.0472106 0.27781 9999 12.5874
68
+ 19 0.0971294 0 0.319819 0 0.0169309 0.566121 9999 13.2867
69
+ 20 0.0884497 0 0.267664 0 0.0266639 0.617223 9999 13.986
70
+ 21 0.0618857 0.107157 0.28523 0 0 0.545727 9999 14.6853
71
+ 22 0 0.0778152 0.407632 0.190696 0.0338213 0.290035 9999 15.3846
72
+ 23 0 0.042628 0.578652 0.0452829 0.0591064 0.27433 9999 16.0839
73
+ 24 0 0.141971 0.365061 0.0584037 0.0688502 0.365714 9999 16.7832
74
+ 25 0 0.175365 0.299882 0.0269857 0.0409727 0.456795 9999 17.4825
75
+ 26 0 0.154991 0.232499 0.12043 0.0504059 0.441673 9999 18.1818
76
+ 27 0 0.189495 0.306282 0.0511524 0.043209 0.409862 9999 18.8811
77
+ 28 0.0054525 0 0.255613 0 0.0132422 0.725692 9999 19.5804
78
+ 29 0.075084 0 0.394885 0.0199278 0.0653382 0.444765 9999 20.2797
79
+ 30 0.0427794 0.00674526 0.222272 0 0.0430254 0.685178 9999 20.979
80
+ 31 0.0787704 0.0438478 0.259433 0 0.0617155 0.556233 9999 21.6783
81
+ 32 0 0.143135 0.386103 0.0149216 0.0210164 0.434824 9999 22.3776
82
+ 33 0.0267889 0 0.439376 0 0.0240901 0.509745 9999 23.0769
83
+ 34 0 0.128326 0.452145 0 0.041157 0.378372 9999 23.7762
84
+ 35 0.00216611 0.16935 0.525297 0.115862 0 0.187324 9999 24.4755
85
+ 36 0 0.200455 0.381655 0.116488 0.0618715 0.239531 9999 25.1748
86
+ 37 0 0.202317 0.286261 0.137205 0.0243477 0.34987 9999 25.8741
87
+ 38 0.0950183 0.178503 0.221609 0.153556 0.0621032 0.289211 9999 26.5734
88
+ 39 0 0.341289 0.19288 0.183878 0.0441805 0.237772 9999 27.2727
89
+ 40 0 0.0732676 0.280317 0.0979939 0.00753876 0.540883 9999 27.972
90
+ 41 0 0.145868 0.143909 0 0.0273829 0.68284 9999 28.6713
91
+ 42 0.0359766 0.166374 0.496313 0.125384 0.0360506 0.139902 9999 29.3706
92
+ 43 0.0317323 0.0353475 0.448397 0.151251 0.0567816 0.27649 9999 30.0699
93
+ 44 0.0196515 0 0.476658 0.086594 0.140991 0.276106 9999 30.7692
94
+ 45 0.110532 0 0.642183 0 0.0447503 0.202535 9999 31.4685
95
+ 46 0.0309901 0 0.371561 0.236505 0.224362 0.136582 9999 32.1678
96
+ 47 0 0 0.489033 0.132638 0.359894 0.018435 9999 32.8671
97
+ 48 0.0258027 0 0.70334 0.0604031 0.108194 0.10226 9999 33.5664
98
+ 49 0.0796332 0 0.528588 0.122281 0.119401 0.150097 9999 34.2657
99
+ 50 0.0787008 0.025728 0.410849 0.127576 0.140541 0.216605 9999 34.965
100
+ 51 0.0410049 0.0407762 0.337421 0.127288 0.0979991 0.355511 9999 35.6643
101
+ 52 0.0950649 0.16557 0.230177 0.012602 0.0508226 0.445764 9999 36.3636
102
+ 53 0.0856267 0.0977385 0.203104 0 0.0591482 0.554382 9999 37.0629
103
+ 54 0.0563727 0.222131 0.145811 0.0543292 0.04565 0.475706 9999 37.7622
104
+ 55 0.0733851 0 0.39977 0.142739 0.118789 0.265318 9999 38.4615
105
+ 56 0.0399971 0.0730186 0.282461 0.244249 0.0440344 0.31624 9999 39.1608
106
+ 57 0.0158813 0.0794663 0.265607 0.239387 0.0223205 0.377338 9999 39.8601
107
+ 58 0.0551554 0.0561039 0.410583 0.132222 0 0.345936 9999 40.5594
108
+ 59 0.0256154 0.0601558 0.392594 0.107901 0.00866704 0.405067 9999 41.2587
109
+ 60 0 0.203759 0.229075 0.0772802 0 0.489886 9999 41.958
110
+ 61 0.130213 0.0622424 0.153207 0.0492946 0 0.605044 9999 42.6573
111
+ 62 0.14361 0.101846 0.168078 0.143937 0.0129745 0.429554 9999 43.3566
112
+ 63 0.16165 0.0278725 0.147636 0.00439379 0 0.658447 9999 44.0559
113
+ 64 0.0678511 0.161872 0.309784 0.0419503 0.00821069 0.410332 9999 44.7552
114
+ 65 0.0579212 0.174317 0.422769 0.00571898 0.0904333 0.24884 9999 45.4545
115
+ 66 0 0.214781 0.390275 0.109526 0.0103023 0.275115 9999 46.1538
116
+ 67 0.00268496 0.0122867 0.589538 0.164601 0.0938714 0.137018 9999 46.8531
117
+ 68 0.0229455 0 0.876268 0.0494385 0.0366993 0.0146492 9999 47.5524
118
+ 69 0.0675654 0.0402854 0.63551 0.0554398 0.0760981 0.125101 9999 48.2517
119
+ 70 0.029873 0 0.705056 0.0204096 0.0983947 0.146267 9999 48.951
120
+ 71 0.239466 0.101629 0.131894 0 0.00107971 0.525931 9999 49.6503
121
+ 72 0.185474 0.115414 0.489618 0.0733034 0.0113195 0.12487 9999 50.3497
122
+ 73 0.312426 0.0763622 0.335175 0.118882 0.0199448 0.137211 9999 51.049
123
+ 74 0.221424 0.117871 0.205993 0.0577188 0.007017 0.389975 9999 51.7483
124
+ 75 0.14722 0.0564143 0.134442 0.0518923 0.0404349 0.569596 9999 52.4476
125
+ 76 0.213063 0.166632 0.289398 0.0282776 0.00407889 0.29855 9999 53.1469
126
+ 77 0.194547 0.136822 0.237666 0.051784 0.00526979 0.373911 9999 53.8462
127
+ 78 0.181643 0.123613 0.216119 0.00368858 0.0289702 0.445967 9999 54.5455
128
+ 79 0 0.0448268 0.632324 0.0231291 0.216638 0.0830824 9999 55.2448
129
+ 80 0 0 0.513446 0.0289336 0.328726 0.128893 9999 55.9441
130
+ 81 0.0222498 0.0357601 0.606087 0.010131 0.12105 0.204722 9999 56.6434
131
+ 82 0 0.0913696 0.404403 0.0235501 0.0848981 0.395779 9999 57.3427
132
+ 83 0.0705968 0.161242 0.142235 0.0285553 0.0297932 0.567578 9999 58.042
133
+ 84 0.0665308 0.068538 0.397151 0.168982 0.079868 0.21893 9999 58.7413
134
+ 85 0.0646075 0 0.290999 0.268496 0.17392 0.201978 9999 59.4406
135
+ 86 0.134211 0 0.484252 0.133685 0.142251 0.105601 9999 60.1399
136
+ 87 0.0906775 0.142621 0.419262 0.0887493 0.115674 0.143016 9999 60.8392
137
+ 88 0.0784756 0.150376 0.425695 0.106256 0.0334179 0.20578 9999 61.5385
138
+ 89 0 0.179663 0.181658 0.125422 0.0206149 0.492643 9999 62.2378
139
+ 90 0.0096897 0.0427141 0.461201 0.208409 0.0175999 0.260386 9999 62.9371
140
+ 91 0 0.0782144 0.327304 0.250638 0.0052437 0.3386 9999 63.6364
141
+ 92 0.0294274 0.00135387 0.57936 0.146011 0.0397172 0.204131 9999 64.3357
142
+ 93 0 0.0461366 0.435178 0.174643 0.0666193 0.277423 9999 65.035
143
+ 94 0.0530967 0 0.648561 0.0807108 0.036394 0.181237 9999 65.7343
144
+ 95 0.123956 0 0.661406 0.00757606 0.0247438 0.182318 9999 66.4336
145
+ 96 0.0157576 0.0827894 0.258538 0.089846 0.0552724 0.497796 9999 67.1329
146
+ 97 0.1051 0.137116 0.234935 0.0460648 0.0337103 0.443074 9999 67.8322
147
+ 98 0.0410107 0.0373782 0.594793 0.142245 0.0638288 0.120745 9999 68.5315
148
+ 99 0.019452 0.108161 0.410575 0.0787477 0.0949359 0.288128 9999 69.2308
149
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