Hugging Face's logo

Datasets:
junidude14
/
PBISC-data

Modalities:
Tabular
Text
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
single-cell-rna-seq
bulk-rna-seq
diffusion
Libraries:
Datasets
pandas
Polars
Dataset card Data Studio Files
xet
 Community
1
junidude14 commited on
Commit
beb0bb6
·
verified ·
1 Parent(s): 9b09f72

Archive 4 checkpoints (1-4)

Browse files
Files changed (4) hide show
  1. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot1/state_types.tsv +30 -0
  2. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot1_full/SPLIT.json +68 -0
  3. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot1_full/state_types.tsv +30 -0
  4. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2/SPLIT.json +67 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot1/state_types.tsv ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 1682
3
+ B cell|Memory B cell B cell 2649
4
+ B cell|Naive B cell B cell 4494
5
+ B cell|Plasma cell B cell 407
6
+ B cell|Transitional B cell B cell 1974
7
+ DC|ASDC DC 44
8
+ DC|cDC1 DC 124
9
+ DC|cDC2 DC 2107
10
+ DC|pDC DC 782
11
+ Monocyte|CD14 monocyte Monocyte 13427
12
+ Monocyte|CD16 monocyte Monocyte 4048
13
+ Monocyte|Intermediate monocyte Monocyte 11369
14
+ NK cell|CD56bright NK cell NK cell 2049
15
+ NK cell|CD56dim NK cell NK cell 13944
16
+ NK cell|Proliferating NK cell NK cell 4018
17
+ Other|Erythrocyte Other 3489
18
+ Other|ILC Other 1407
19
+ Other|Platelet Other 842
20
+ Other|Progenitor cell Other 114
21
+ T cell|CD8aa T cell 4825
22
+ T cell|DN T cell T cell 7842
23
+ T cell|MAIT T cell 10998
24
+ T cell|Memory CD4 T cell T cell 14166
25
+ T cell|Memory CD8 T cell T cell 11744
26
+ T cell|Naive CD4 T cell T cell 11673
27
+ T cell|Naive CD8 T cell T cell 15176
28
+ T cell|Proliferating T cell T cell 966
29
+ T cell|Treg T cell 3894
30
+ T cell|gdT T cell 5388
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot1_full/SPLIT.json ADDED
@@ -0,0 +1,68 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "giroux2022",
3
+ "kind": "fewshot",
4
+ "idx": 1,
5
+ "reference": [
6
+ "7085CA_d0",
7
+ "7085CA_d7",
8
+ "7085CA_d14",
9
+ "2AD75E_d0",
10
+ "2AD75E_d7",
11
+ "2AD75E_d14",
12
+ "B85D75_d0",
13
+ "B85D75_d7",
14
+ "82CCF5_d0",
15
+ "82CCF5_d7",
16
+ "82CCF5_d14",
17
+ "BAAF62_d0",
18
+ "BAAF62_d7",
19
+ "BAAF62_d14"
20
+ ],
21
+ "mixture": [
22
+ "450905_d0",
23
+ "450905_d14",
24
+ "0B943B_d0",
25
+ "0B943B_d14",
26
+ "180E1A_d0",
27
+ "180E1A_d7",
28
+ "180E1A_d14",
29
+ "0BF51C_d0",
30
+ "0BF51C_d7",
31
+ "0BF51C_d14"
32
+ ],
33
+ "train_donors": [
34
+ "2AD75E",
35
+ "7085CA",
36
+ "82CCF5",
37
+ "B85D75",
38
+ "BAAF62"
39
+ ],
40
+ "run_json_check": true,
41
+ "n_reference_samples": 14,
42
+ "n_mixture_samples": 10,
43
+ "reference_cells": 155642,
44
+ "states": 29,
45
+ "states_merged_minor": 0,
46
+ "types": [
47
+ "B cell",
48
+ "DC",
49
+ "Monocyte",
50
+ "NK cell",
51
+ "Other",
52
+ "T cell"
53
+ ],
54
+ "missing_types": [],
55
+ "bp_axis_genes": 17988,
56
+ "genes_kept": 15470,
57
+ "genes_dropped_not_bulk_valid": 479,
58
+ "genes_dropped_zero_reference": 2039,
59
+ "gene_mode": "full",
60
+ "aggregates_sha256": "6c0178da65a0929edf63875236d62080254279829c59603e489edeb64ae86e2f",
61
+ "files": {
62
+ "reference.tsv.gz": "5c76bc5f59560638392ba1b04a5b5e9ba33f1a6bc3ae881fd6f51590b4c0cd0b",
63
+ "state_types.tsv": "6c47f43d3c16f4154cec4fbb0d131b6dfa7c4ab12654fdd0dc6f14497807c4ef",
64
+ "mixture.tsv.gz": "e7d71a64fbe5c36264fd08d86b77c397e0f7f89501a7df9d5c8b8c9d7d391926"
65
+ },
66
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
67
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
68
+ }
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot1_full/state_types.tsv ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 1682
3
+ B cell|Memory B cell B cell 2649
4
+ B cell|Naive B cell B cell 4494
5
+ B cell|Plasma cell B cell 407
6
+ B cell|Transitional B cell B cell 1974
7
+ DC|ASDC DC 44
8
+ DC|cDC1 DC 124
9
+ DC|cDC2 DC 2107
10
+ DC|pDC DC 782
11
+ Monocyte|CD14 monocyte Monocyte 13427
12
+ Monocyte|CD16 monocyte Monocyte 4048
13
+ Monocyte|Intermediate monocyte Monocyte 11369
14
+ NK cell|CD56bright NK cell NK cell 2049
15
+ NK cell|CD56dim NK cell NK cell 13944
16
+ NK cell|Proliferating NK cell NK cell 4018
17
+ Other|Erythrocyte Other 3489
18
+ Other|ILC Other 1407
19
+ Other|Platelet Other 842
20
+ Other|Progenitor cell Other 114
21
+ T cell|CD8aa T cell 4825
22
+ T cell|DN T cell T cell 7842
23
+ T cell|MAIT T cell 10998
24
+ T cell|Memory CD4 T cell T cell 14166
25
+ T cell|Memory CD8 T cell T cell 11744
26
+ T cell|Naive CD4 T cell T cell 11673
27
+ T cell|Naive CD8 T cell T cell 15176
28
+ T cell|Proliferating T cell T cell 966
29
+ T cell|Treg T cell 3894
30
+ T cell|gdT T cell 5388
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2/SPLIT.json ADDED
@@ -0,0 +1,67 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "giroux2022",
3
+ "kind": "fewshot",
4
+ "idx": 2,
5
+ "reference": [
6
+ "450905_d0",
7
+ "450905_d14",
8
+ "0B943B_d0",
9
+ "0B943B_d14",
10
+ "B85D75_d0",
11
+ "B85D75_d7",
12
+ "180E1A_d0",
13
+ "180E1A_d7",
14
+ "180E1A_d14",
15
+ "BAAF62_d0",
16
+ "BAAF62_d7",
17
+ "BAAF62_d14"
18
+ ],
19
+ "mixture": [
20
+ "7085CA_d0",
21
+ "7085CA_d7",
22
+ "7085CA_d14",
23
+ "2AD75E_d0",
24
+ "2AD75E_d7",
25
+ "2AD75E_d14",
26
+ "82CCF5_d0",
27
+ "82CCF5_d7",
28
+ "82CCF5_d14",
29
+ "0BF51C_d0",
30
+ "0BF51C_d7",
31
+ "0BF51C_d14"
32
+ ],
33
+ "train_donors": [
34
+ "0B943B",
35
+ "180E1A",
36
+ "450905",
37
+ "B85D75",
38
+ "BAAF62"
39
+ ],
40
+ "run_json_check": true,
41
+ "n_reference_samples": 12,
42
+ "n_mixture_samples": 12,
43
+ "reference_cells": 128304,
44
+ "states": 29,
45
+ "states_merged_minor": 0,
46
+ "types": [
47
+ "B cell",
48
+ "DC",
49
+ "Monocyte",
50
+ "NK cell",
51
+ "Other",
52
+ "T cell"
53
+ ],
54
+ "missing_types": [],
55
+ "bp_axis_genes": 5556,
56
+ "genes_kept": 5389,
57
+ "genes_dropped_not_bulk_valid": 0,
58
+ "genes_dropped_zero_reference": 167,
59
+ "aggregates_sha256": "9b80e097aafc8e9f46bba6166b50af98391afa05d8584acf7066a697762db5c7",
60
+ "files": {
61
+ "reference.tsv.gz": "68189800fd1e13e0083ec635b2346d9e2ef9fc5ce2e06394da183b4fc1026fdf",
62
+ "state_types.tsv": "665b8d7717ad6807d7d91a240192fd29a53270f883f72c97b0ee405b64c9c4ad",
63
+ "mixture.tsv.gz": "a75c8074e1bdac371e0ab111d9dbd9c4d0373e607fc56bdc9be159bbe404b842"
64
+ },
65
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
66
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
67
+ }