Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/work/obs_labels_sle/labels.manifest.json +148 -0
- paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/work/scanvi_labels_dress_zs_s13_f01common/labels.manifest.json +168 -0
- paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/work/scanvi_labels_kawasaki_zs_s13_f01common/labels.manifest.json +167 -0
- paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/work/scanvi_labels_sle_zs_s13_f01common/labels.manifest.json +168 -0
paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/work/obs_labels_sle/labels.manifest.json
ADDED
|
@@ -0,0 +1,148 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": "",
|
| 3 |
+
"split": "",
|
| 4 |
+
"input_h5ad": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/data/sle/observed_panel6k.h5ad",
|
| 5 |
+
"method": "observed_sle",
|
| 6 |
+
"out_parquet": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/obs_labels_sle/labels.parquet",
|
| 7 |
+
"training_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/reference/aifi_reference_f01common.h5ad",
|
| 8 |
+
"target_truth_used_for_fitting": false,
|
| 9 |
+
"classifier": "aifi_scanvi_rebuild_20260916_frozen_predict[aifi_scanvi_f01common_v1]",
|
| 10 |
+
"labels": [
|
| 11 |
+
"T cell",
|
| 12 |
+
"B cell",
|
| 13 |
+
"Monocyte",
|
| 14 |
+
"NK cell",
|
| 15 |
+
"DC",
|
| 16 |
+
"Other"
|
| 17 |
+
],
|
| 18 |
+
"l2_labels": [
|
| 19 |
+
"ASDC",
|
| 20 |
+
"CD14 monocyte",
|
| 21 |
+
"CD16 monocyte",
|
| 22 |
+
"CD56bright NK cell",
|
| 23 |
+
"CD56dim NK cell",
|
| 24 |
+
"CD8aa",
|
| 25 |
+
"DN T cell",
|
| 26 |
+
"Effector B cell",
|
| 27 |
+
"Erythrocyte",
|
| 28 |
+
"ILC",
|
| 29 |
+
"Intermediate monocyte",
|
| 30 |
+
"MAIT",
|
| 31 |
+
"Memory B cell",
|
| 32 |
+
"Memory CD4 T cell",
|
| 33 |
+
"Memory CD8 T cell",
|
| 34 |
+
"Naive B cell",
|
| 35 |
+
"Naive CD4 T cell",
|
| 36 |
+
"Naive CD8 T cell",
|
| 37 |
+
"Plasma cell",
|
| 38 |
+
"Platelet",
|
| 39 |
+
"Progenitor cell",
|
| 40 |
+
"Proliferating NK cell",
|
| 41 |
+
"Proliferating T cell",
|
| 42 |
+
"Transitional B cell",
|
| 43 |
+
"Treg",
|
| 44 |
+
"cDC1",
|
| 45 |
+
"cDC2",
|
| 46 |
+
"gdT",
|
| 47 |
+
"pDC"
|
| 48 |
+
],
|
| 49 |
+
"n_cells": 358235,
|
| 50 |
+
"n_genes": 1005,
|
| 51 |
+
"note": "Evaluation-only annotation with a frozen AIFI scANVI (zero query-training epochs); L1 outside PBMC5 -> Other, never dropped.",
|
| 52 |
+
"label_source_column": "AIFI_L2 (reference) -> AIFI_L2_TO_L1 -> PBMC5 + Other",
|
| 53 |
+
"query_train_epochs": 0,
|
| 54 |
+
"confidence_threshold": 0.0,
|
| 55 |
+
"subset": false,
|
| 56 |
+
"evaluator_aligned": true,
|
| 57 |
+
"gene_space": {
|
| 58 |
+
"join_key": "ensembl_id",
|
| 59 |
+
"model_genes": 1005,
|
| 60 |
+
"query_genes": 6000,
|
| 61 |
+
"model_genes_missing_from_query_zero_padded": 0,
|
| 62 |
+
"query_genes_outside_model_dropped": 4995,
|
| 63 |
+
"rule": "query is subset/reordered to the model's gene list; zero-padding of absent model genes is refused unless --allow-missing-genes"
|
| 64 |
+
},
|
| 65 |
+
"readout": null,
|
| 66 |
+
"query_build": null,
|
| 67 |
+
"model": {
|
| 68 |
+
"scanvi_model_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_model",
|
| 69 |
+
"model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
|
| 70 |
+
"model_manifest": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/MODEL_MANIFEST.json",
|
| 71 |
+
"held_out_summary": {
|
| 72 |
+
"l2_accuracy": 0.8692869740488788,
|
| 73 |
+
"l2_macro_f1": 0.8500925599737216,
|
| 74 |
+
"l1_accuracy": 0.9918367346938776,
|
| 75 |
+
"l1_macro_f1": 0.9715232379009036,
|
| 76 |
+
"pbmc5_other_accuracy": 0.9920886873267826,
|
| 77 |
+
"pbmc5_other_macro_f1": 0.9812088972148597
|
| 78 |
+
}
|
| 79 |
+
},
|
| 80 |
+
"label_counts": {
|
| 81 |
+
"celltype_l1_pred": {
|
| 82 |
+
"T cell": 216491,
|
| 83 |
+
"Monocyte": 70901,
|
| 84 |
+
"B cell": 35488,
|
| 85 |
+
"NK cell": 22501,
|
| 86 |
+
"Other": 7865,
|
| 87 |
+
"DC": 4989
|
| 88 |
+
},
|
| 89 |
+
"aifi_l1": {
|
| 90 |
+
"T cell": 216491,
|
| 91 |
+
"Monocyte": 70901,
|
| 92 |
+
"B cell": 35488,
|
| 93 |
+
"NK cell": 22501,
|
| 94 |
+
"DC": 4989,
|
| 95 |
+
"Erythrocyte": 4946,
|
| 96 |
+
"ILC": 2065,
|
| 97 |
+
"Platelet": 502,
|
| 98 |
+
"Progenitor cell": 352
|
| 99 |
+
},
|
| 100 |
+
"aifi_l2": {
|
| 101 |
+
"Naive CD4 T cell": 60218,
|
| 102 |
+
"CD14 monocyte": 52653,
|
| 103 |
+
"Naive CD8 T cell": 42745,
|
| 104 |
+
"Memory CD4 T cell": 32437,
|
| 105 |
+
"Memory CD8 T cell": 26309,
|
| 106 |
+
"gdT": 17101,
|
| 107 |
+
"CD56dim NK cell": 14298,
|
| 108 |
+
"CD8aa": 13700,
|
| 109 |
+
"Treg": 13539,
|
| 110 |
+
"Naive B cell": 12971,
|
| 111 |
+
"CD16 monocyte": 10374,
|
| 112 |
+
"Transitional B cell": 8659,
|
| 113 |
+
"Memory B cell": 8554,
|
| 114 |
+
"Intermediate monocyte": 7874,
|
| 115 |
+
"MAIT": 5420,
|
| 116 |
+
"Erythrocyte": 4946,
|
| 117 |
+
"Proliferating NK cell": 4147,
|
| 118 |
+
"CD56bright NK cell": 4056,
|
| 119 |
+
"Effector B cell": 3778,
|
| 120 |
+
"cDC2": 3691,
|
| 121 |
+
"DN T cell": 3069,
|
| 122 |
+
"ILC": 2065,
|
| 123 |
+
"Proliferating T cell": 1953,
|
| 124 |
+
"Plasma cell": 1526,
|
| 125 |
+
"pDC": 1042,
|
| 126 |
+
"Platelet": 502,
|
| 127 |
+
"Progenitor cell": 352,
|
| 128 |
+
"cDC1": 158,
|
| 129 |
+
"ASDC": 98
|
| 130 |
+
}
|
| 131 |
+
},
|
| 132 |
+
"confidence": {
|
| 133 |
+
"mean_l2_max_prob": 0.9299938798645399,
|
| 134 |
+
"mean_l1_mass": 0.9870535135269165,
|
| 135 |
+
"frac_l2_max_prob_ge_0.5": 0.9771909500746716
|
| 136 |
+
},
|
| 137 |
+
"timings_s": {
|
| 138 |
+
"predict": 4.0,
|
| 139 |
+
"total": 7.7
|
| 140 |
+
},
|
| 141 |
+
"versions": {
|
| 142 |
+
"scvi-tools": "1.4.1",
|
| 143 |
+
"torch": "2.11.0+cu130",
|
| 144 |
+
"anndata": "0.12.19"
|
| 145 |
+
},
|
| 146 |
+
"device": "cpu",
|
| 147 |
+
"created_at_utc": "2026-10-04T13:58:03.853629+00:00"
|
| 148 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/work/scanvi_labels_dress_zs_s13_f01common/labels.manifest.json
ADDED
|
@@ -0,0 +1,168 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": "",
|
| 3 |
+
"split": "",
|
| 4 |
+
"input_h5ad": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/dress_zs_s13_poisson.h5ad",
|
| 5 |
+
"method": "generated_c1qx_dress_zs_s13",
|
| 6 |
+
"out_parquet": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/scanvi_labels_dress_zs_s13_f01common/labels.parquet",
|
| 7 |
+
"training_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/reference/aifi_reference_f01common.h5ad",
|
| 8 |
+
"target_truth_used_for_fitting": false,
|
| 9 |
+
"classifier": "aifi_scanvi_rebuild_20260916_frozen_predict[aifi_scanvi_f01common_v1]",
|
| 10 |
+
"labels": [
|
| 11 |
+
"T cell",
|
| 12 |
+
"B cell",
|
| 13 |
+
"Monocyte",
|
| 14 |
+
"NK cell",
|
| 15 |
+
"DC",
|
| 16 |
+
"Other"
|
| 17 |
+
],
|
| 18 |
+
"l2_labels": [
|
| 19 |
+
"ASDC",
|
| 20 |
+
"CD14 monocyte",
|
| 21 |
+
"CD16 monocyte",
|
| 22 |
+
"CD56bright NK cell",
|
| 23 |
+
"CD56dim NK cell",
|
| 24 |
+
"CD8aa",
|
| 25 |
+
"DN T cell",
|
| 26 |
+
"Effector B cell",
|
| 27 |
+
"Erythrocyte",
|
| 28 |
+
"ILC",
|
| 29 |
+
"Intermediate monocyte",
|
| 30 |
+
"MAIT",
|
| 31 |
+
"Memory B cell",
|
| 32 |
+
"Memory CD4 T cell",
|
| 33 |
+
"Memory CD8 T cell",
|
| 34 |
+
"Naive B cell",
|
| 35 |
+
"Naive CD4 T cell",
|
| 36 |
+
"Naive CD8 T cell",
|
| 37 |
+
"Plasma cell",
|
| 38 |
+
"Platelet",
|
| 39 |
+
"Progenitor cell",
|
| 40 |
+
"Proliferating NK cell",
|
| 41 |
+
"Proliferating T cell",
|
| 42 |
+
"Transitional B cell",
|
| 43 |
+
"Treg",
|
| 44 |
+
"cDC1",
|
| 45 |
+
"cDC2",
|
| 46 |
+
"gdT",
|
| 47 |
+
"pDC"
|
| 48 |
+
],
|
| 49 |
+
"n_cells": 35000,
|
| 50 |
+
"n_genes": 1005,
|
| 51 |
+
"note": "Evaluation-only annotation with a frozen AIFI scANVI (zero query-training epochs); L1 outside PBMC5 -> Other, never dropped.",
|
| 52 |
+
"label_source_column": "AIFI_L2 (reference) -> AIFI_L2_TO_L1 -> PBMC5 + Other",
|
| 53 |
+
"query_train_epochs": 0,
|
| 54 |
+
"confidence_threshold": 0.0,
|
| 55 |
+
"subset": false,
|
| 56 |
+
"evaluator_aligned": true,
|
| 57 |
+
"gene_space": {
|
| 58 |
+
"join_key": "ensembl_id",
|
| 59 |
+
"model_genes": 1005,
|
| 60 |
+
"query_genes": 6000,
|
| 61 |
+
"model_genes_missing_from_query_zero_padded": 0,
|
| 62 |
+
"query_genes_outside_model_dropped": 4995,
|
| 63 |
+
"rule": "query is subset/reordered to the model's gene list; zero-padding of absent model genes is refused unless --allow-missing-genes"
|
| 64 |
+
},
|
| 65 |
+
"readout": {
|
| 66 |
+
"batch_prefix": "",
|
| 67 |
+
"input_matrix_key": "generated_counts",
|
| 68 |
+
"input_n_cells": 35000,
|
| 69 |
+
"input_nonzero_fraction": 0.05939442857142857,
|
| 70 |
+
"input_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/dress_zs_s13.npz",
|
| 71 |
+
"input_npz_sha256": "63be26a1ec9a7d9f99b7f2edf88b1bf3d4da6d1065915fe2ba71dd750dc49f0b",
|
| 72 |
+
"input_row_sum_median": 2382.6064453125,
|
| 73 |
+
"library_scale": 1.0,
|
| 74 |
+
"library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
|
| 75 |
+
"method_name": "generated_c1qx_dress_zs_s13",
|
| 76 |
+
"n_cells": 35000,
|
| 77 |
+
"n_genes": 6000,
|
| 78 |
+
"output_nonzero_fraction": 0.043445028571428575,
|
| 79 |
+
"output_row_sum_median": 2384.5,
|
| 80 |
+
"rule": "counts ~ Poisson(generated_counts * library_scale), independent per entry, single draw",
|
| 81 |
+
"seed": 20260916,
|
| 82 |
+
"subset_rows": 35000,
|
| 83 |
+
"subset_seed": null,
|
| 84 |
+
"unlabeled_category": "Unknown"
|
| 85 |
+
},
|
| 86 |
+
"query_build": null,
|
| 87 |
+
"model": {
|
| 88 |
+
"scanvi_model_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_model",
|
| 89 |
+
"model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
|
| 90 |
+
"model_manifest": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/MODEL_MANIFEST.json",
|
| 91 |
+
"held_out_summary": {
|
| 92 |
+
"l2_accuracy": 0.8692869740488788,
|
| 93 |
+
"l2_macro_f1": 0.8500925599737216,
|
| 94 |
+
"l1_accuracy": 0.9918367346938776,
|
| 95 |
+
"l1_macro_f1": 0.9715232379009036,
|
| 96 |
+
"pbmc5_other_accuracy": 0.9920886873267826,
|
| 97 |
+
"pbmc5_other_macro_f1": 0.9812088972148597
|
| 98 |
+
}
|
| 99 |
+
},
|
| 100 |
+
"label_counts": {
|
| 101 |
+
"celltype_l1_pred": {
|
| 102 |
+
"T cell": 27578,
|
| 103 |
+
"Monocyte": 3793,
|
| 104 |
+
"B cell": 1938,
|
| 105 |
+
"NK cell": 1023,
|
| 106 |
+
"DC": 462,
|
| 107 |
+
"Other": 206
|
| 108 |
+
},
|
| 109 |
+
"aifi_l1": {
|
| 110 |
+
"T cell": 27578,
|
| 111 |
+
"Monocyte": 3793,
|
| 112 |
+
"B cell": 1938,
|
| 113 |
+
"NK cell": 1023,
|
| 114 |
+
"DC": 462,
|
| 115 |
+
"Erythrocyte": 119,
|
| 116 |
+
"ILC": 37,
|
| 117 |
+
"Platelet": 30,
|
| 118 |
+
"Progenitor cell": 20
|
| 119 |
+
},
|
| 120 |
+
"aifi_l2": {
|
| 121 |
+
"Naive CD4 T cell": 8602,
|
| 122 |
+
"Memory CD4 T cell": 7761,
|
| 123 |
+
"Naive CD8 T cell": 4372,
|
| 124 |
+
"Memory CD8 T cell": 2529,
|
| 125 |
+
"Intermediate monocyte": 2380,
|
| 126 |
+
"Treg": 1546,
|
| 127 |
+
"CD14 monocyte": 1090,
|
| 128 |
+
"Proliferating T cell": 1001,
|
| 129 |
+
"Naive B cell": 803,
|
| 130 |
+
"CD56dim NK cell": 730,
|
| 131 |
+
"Memory B cell": 682,
|
| 132 |
+
"DN T cell": 618,
|
| 133 |
+
"gdT": 602,
|
| 134 |
+
"MAIT": 397,
|
| 135 |
+
"Effector B cell": 349,
|
| 136 |
+
"CD16 monocyte": 323,
|
| 137 |
+
"cDC2": 306,
|
| 138 |
+
"CD56bright NK cell": 196,
|
| 139 |
+
"CD8aa": 150,
|
| 140 |
+
"cDC1": 135,
|
| 141 |
+
"Erythrocyte": 119,
|
| 142 |
+
"Proliferating NK cell": 97,
|
| 143 |
+
"Plasma cell": 76,
|
| 144 |
+
"ILC": 37,
|
| 145 |
+
"Platelet": 30,
|
| 146 |
+
"Transitional B cell": 28,
|
| 147 |
+
"Progenitor cell": 20,
|
| 148 |
+
"pDC": 11,
|
| 149 |
+
"ASDC": 10
|
| 150 |
+
}
|
| 151 |
+
},
|
| 152 |
+
"confidence": {
|
| 153 |
+
"mean_l2_max_prob": 0.9361765263548919,
|
| 154 |
+
"mean_l1_mass": 0.9905846118927002,
|
| 155 |
+
"frac_l2_max_prob_ge_0.5": 0.9814571428571428
|
| 156 |
+
},
|
| 157 |
+
"timings_s": {
|
| 158 |
+
"predict": 0.3,
|
| 159 |
+
"total": 0.7
|
| 160 |
+
},
|
| 161 |
+
"versions": {
|
| 162 |
+
"scvi-tools": "1.4.1",
|
| 163 |
+
"torch": "2.11.0+cu130",
|
| 164 |
+
"anndata": "0.12.19"
|
| 165 |
+
},
|
| 166 |
+
"device": "cpu",
|
| 167 |
+
"created_at_utc": "2026-10-04T13:59:08.481469+00:00"
|
| 168 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/work/scanvi_labels_kawasaki_zs_s13_f01common/labels.manifest.json
ADDED
|
@@ -0,0 +1,167 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": "",
|
| 3 |
+
"split": "",
|
| 4 |
+
"input_h5ad": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/kawasaki_zs_s13_poisson.h5ad",
|
| 5 |
+
"method": "generated_c1qx_kawasaki_zs_s13",
|
| 6 |
+
"out_parquet": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/scanvi_labels_kawasaki_zs_s13_f01common/labels.parquet",
|
| 7 |
+
"training_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/reference/aifi_reference_f01common.h5ad",
|
| 8 |
+
"target_truth_used_for_fitting": false,
|
| 9 |
+
"classifier": "aifi_scanvi_rebuild_20260916_frozen_predict[aifi_scanvi_f01common_v1]",
|
| 10 |
+
"labels": [
|
| 11 |
+
"T cell",
|
| 12 |
+
"B cell",
|
| 13 |
+
"Monocyte",
|
| 14 |
+
"NK cell",
|
| 15 |
+
"DC",
|
| 16 |
+
"Other"
|
| 17 |
+
],
|
| 18 |
+
"l2_labels": [
|
| 19 |
+
"ASDC",
|
| 20 |
+
"CD14 monocyte",
|
| 21 |
+
"CD16 monocyte",
|
| 22 |
+
"CD56bright NK cell",
|
| 23 |
+
"CD56dim NK cell",
|
| 24 |
+
"CD8aa",
|
| 25 |
+
"DN T cell",
|
| 26 |
+
"Effector B cell",
|
| 27 |
+
"Erythrocyte",
|
| 28 |
+
"ILC",
|
| 29 |
+
"Intermediate monocyte",
|
| 30 |
+
"MAIT",
|
| 31 |
+
"Memory B cell",
|
| 32 |
+
"Memory CD4 T cell",
|
| 33 |
+
"Memory CD8 T cell",
|
| 34 |
+
"Naive B cell",
|
| 35 |
+
"Naive CD4 T cell",
|
| 36 |
+
"Naive CD8 T cell",
|
| 37 |
+
"Plasma cell",
|
| 38 |
+
"Platelet",
|
| 39 |
+
"Progenitor cell",
|
| 40 |
+
"Proliferating NK cell",
|
| 41 |
+
"Proliferating T cell",
|
| 42 |
+
"Transitional B cell",
|
| 43 |
+
"Treg",
|
| 44 |
+
"cDC1",
|
| 45 |
+
"cDC2",
|
| 46 |
+
"gdT",
|
| 47 |
+
"pDC"
|
| 48 |
+
],
|
| 49 |
+
"n_cells": 75000,
|
| 50 |
+
"n_genes": 1005,
|
| 51 |
+
"note": "Evaluation-only annotation with a frozen AIFI scANVI (zero query-training epochs); L1 outside PBMC5 -> Other, never dropped.",
|
| 52 |
+
"label_source_column": "AIFI_L2 (reference) -> AIFI_L2_TO_L1 -> PBMC5 + Other",
|
| 53 |
+
"query_train_epochs": 0,
|
| 54 |
+
"confidence_threshold": 0.0,
|
| 55 |
+
"subset": false,
|
| 56 |
+
"evaluator_aligned": true,
|
| 57 |
+
"gene_space": {
|
| 58 |
+
"join_key": "ensembl_id",
|
| 59 |
+
"model_genes": 1005,
|
| 60 |
+
"query_genes": 6000,
|
| 61 |
+
"model_genes_missing_from_query_zero_padded": 0,
|
| 62 |
+
"query_genes_outside_model_dropped": 4995,
|
| 63 |
+
"rule": "query is subset/reordered to the model's gene list; zero-padding of absent model genes is refused unless --allow-missing-genes"
|
| 64 |
+
},
|
| 65 |
+
"readout": {
|
| 66 |
+
"batch_prefix": "",
|
| 67 |
+
"input_matrix_key": "generated_counts",
|
| 68 |
+
"input_n_cells": 75000,
|
| 69 |
+
"input_nonzero_fraction": 0.05047900888888889,
|
| 70 |
+
"input_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/kawasaki_zs_s13.npz",
|
| 71 |
+
"input_npz_sha256": "a91e15d5b3d347327744a488d77312405907a1cc1c25ffc7f9a559dc125bb78d",
|
| 72 |
+
"input_row_sum_median": 2126.054443359375,
|
| 73 |
+
"library_scale": 1.0,
|
| 74 |
+
"library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
|
| 75 |
+
"method_name": "generated_c1qx_kawasaki_zs_s13",
|
| 76 |
+
"n_cells": 75000,
|
| 77 |
+
"n_genes": 6000,
|
| 78 |
+
"output_nonzero_fraction": 0.03843248666666667,
|
| 79 |
+
"output_row_sum_median": 2125.0,
|
| 80 |
+
"rule": "counts ~ Poisson(generated_counts * library_scale), independent per entry, single draw",
|
| 81 |
+
"seed": 20260916,
|
| 82 |
+
"subset_rows": 75000,
|
| 83 |
+
"subset_seed": null,
|
| 84 |
+
"unlabeled_category": "Unknown"
|
| 85 |
+
},
|
| 86 |
+
"query_build": null,
|
| 87 |
+
"model": {
|
| 88 |
+
"scanvi_model_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_model",
|
| 89 |
+
"model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
|
| 90 |
+
"model_manifest": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/MODEL_MANIFEST.json",
|
| 91 |
+
"held_out_summary": {
|
| 92 |
+
"l2_accuracy": 0.8692869740488788,
|
| 93 |
+
"l2_macro_f1": 0.8500925599737216,
|
| 94 |
+
"l1_accuracy": 0.9918367346938776,
|
| 95 |
+
"l1_macro_f1": 0.9715232379009036,
|
| 96 |
+
"pbmc5_other_accuracy": 0.9920886873267826,
|
| 97 |
+
"pbmc5_other_macro_f1": 0.9812088972148597
|
| 98 |
+
}
|
| 99 |
+
},
|
| 100 |
+
"label_counts": {
|
| 101 |
+
"celltype_l1_pred": {
|
| 102 |
+
"T cell": 42408,
|
| 103 |
+
"B cell": 20998,
|
| 104 |
+
"Monocyte": 7927,
|
| 105 |
+
"NK cell": 3017,
|
| 106 |
+
"Other": 336,
|
| 107 |
+
"DC": 314
|
| 108 |
+
},
|
| 109 |
+
"aifi_l1": {
|
| 110 |
+
"T cell": 42408,
|
| 111 |
+
"B cell": 20998,
|
| 112 |
+
"Monocyte": 7927,
|
| 113 |
+
"NK cell": 3017,
|
| 114 |
+
"DC": 314,
|
| 115 |
+
"Erythrocyte": 131,
|
| 116 |
+
"Platelet": 73,
|
| 117 |
+
"Progenitor cell": 71,
|
| 118 |
+
"ILC": 61
|
| 119 |
+
},
|
| 120 |
+
"aifi_l2": {
|
| 121 |
+
"Naive CD4 T cell": 13979,
|
| 122 |
+
"Naive B cell": 11974,
|
| 123 |
+
"Memory CD4 T cell": 10148,
|
| 124 |
+
"Naive CD8 T cell": 7202,
|
| 125 |
+
"CD14 monocyte": 5771,
|
| 126 |
+
"Effector B cell": 4215,
|
| 127 |
+
"Memory CD8 T cell": 4168,
|
| 128 |
+
"Memory B cell": 2779,
|
| 129 |
+
"Treg": 2459,
|
| 130 |
+
"CD56dim NK cell": 2168,
|
| 131 |
+
"gdT": 1903,
|
| 132 |
+
"Transitional B cell": 1824,
|
| 133 |
+
"Intermediate monocyte": 1289,
|
| 134 |
+
"MAIT": 951,
|
| 135 |
+
"DN T cell": 892,
|
| 136 |
+
"CD16 monocyte": 867,
|
| 137 |
+
"CD56bright NK cell": 571,
|
| 138 |
+
"CD8aa": 376,
|
| 139 |
+
"Proliferating T cell": 330,
|
| 140 |
+
"cDC2": 282,
|
| 141 |
+
"Proliferating NK cell": 278,
|
| 142 |
+
"Plasma cell": 206,
|
| 143 |
+
"Erythrocyte": 131,
|
| 144 |
+
"Platelet": 73,
|
| 145 |
+
"Progenitor cell": 71,
|
| 146 |
+
"ILC": 61,
|
| 147 |
+
"pDC": 21,
|
| 148 |
+
"cDC1": 11
|
| 149 |
+
}
|
| 150 |
+
},
|
| 151 |
+
"confidence": {
|
| 152 |
+
"mean_l2_max_prob": 0.9433015090618531,
|
| 153 |
+
"mean_l1_mass": 0.9957360625267029,
|
| 154 |
+
"frac_l2_max_prob_ge_0.5": 0.9864533333333333
|
| 155 |
+
},
|
| 156 |
+
"timings_s": {
|
| 157 |
+
"predict": 0.4,
|
| 158 |
+
"total": 1.0
|
| 159 |
+
},
|
| 160 |
+
"versions": {
|
| 161 |
+
"scvi-tools": "1.4.1",
|
| 162 |
+
"torch": "2.11.0+cu130",
|
| 163 |
+
"anndata": "0.12.19"
|
| 164 |
+
},
|
| 165 |
+
"device": "cpu",
|
| 166 |
+
"created_at_utc": "2026-10-04T14:02:34.263686+00:00"
|
| 167 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/dataset/server_1/model8/plans/c1q_crossdisease_20261004/work/scanvi_labels_sle_zs_s13_f01common/labels.manifest.json
ADDED
|
@@ -0,0 +1,168 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": "",
|
| 3 |
+
"split": "",
|
| 4 |
+
"input_h5ad": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/sle_zs_s13_poisson.h5ad",
|
| 5 |
+
"method": "generated_c1qx_sle_zs_s13",
|
| 6 |
+
"out_parquet": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/scanvi_labels_sle_zs_s13_f01common/labels.parquet",
|
| 7 |
+
"training_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/reference/aifi_reference_f01common.h5ad",
|
| 8 |
+
"target_truth_used_for_fitting": false,
|
| 9 |
+
"classifier": "aifi_scanvi_rebuild_20260916_frozen_predict[aifi_scanvi_f01common_v1]",
|
| 10 |
+
"labels": [
|
| 11 |
+
"T cell",
|
| 12 |
+
"B cell",
|
| 13 |
+
"Monocyte",
|
| 14 |
+
"NK cell",
|
| 15 |
+
"DC",
|
| 16 |
+
"Other"
|
| 17 |
+
],
|
| 18 |
+
"l2_labels": [
|
| 19 |
+
"ASDC",
|
| 20 |
+
"CD14 monocyte",
|
| 21 |
+
"CD16 monocyte",
|
| 22 |
+
"CD56bright NK cell",
|
| 23 |
+
"CD56dim NK cell",
|
| 24 |
+
"CD8aa",
|
| 25 |
+
"DN T cell",
|
| 26 |
+
"Effector B cell",
|
| 27 |
+
"Erythrocyte",
|
| 28 |
+
"ILC",
|
| 29 |
+
"Intermediate monocyte",
|
| 30 |
+
"MAIT",
|
| 31 |
+
"Memory B cell",
|
| 32 |
+
"Memory CD4 T cell",
|
| 33 |
+
"Memory CD8 T cell",
|
| 34 |
+
"Naive B cell",
|
| 35 |
+
"Naive CD4 T cell",
|
| 36 |
+
"Naive CD8 T cell",
|
| 37 |
+
"Plasma cell",
|
| 38 |
+
"Platelet",
|
| 39 |
+
"Progenitor cell",
|
| 40 |
+
"Proliferating NK cell",
|
| 41 |
+
"Proliferating T cell",
|
| 42 |
+
"Transitional B cell",
|
| 43 |
+
"Treg",
|
| 44 |
+
"cDC1",
|
| 45 |
+
"cDC2",
|
| 46 |
+
"gdT",
|
| 47 |
+
"pDC"
|
| 48 |
+
],
|
| 49 |
+
"n_cells": 168000,
|
| 50 |
+
"n_genes": 1005,
|
| 51 |
+
"note": "Evaluation-only annotation with a frozen AIFI scANVI (zero query-training epochs); L1 outside PBMC5 -> Other, never dropped.",
|
| 52 |
+
"label_source_column": "AIFI_L2 (reference) -> AIFI_L2_TO_L1 -> PBMC5 + Other",
|
| 53 |
+
"query_train_epochs": 0,
|
| 54 |
+
"confidence_threshold": 0.0,
|
| 55 |
+
"subset": false,
|
| 56 |
+
"evaluator_aligned": true,
|
| 57 |
+
"gene_space": {
|
| 58 |
+
"join_key": "ensembl_id",
|
| 59 |
+
"model_genes": 1005,
|
| 60 |
+
"query_genes": 6000,
|
| 61 |
+
"model_genes_missing_from_query_zero_padded": 0,
|
| 62 |
+
"query_genes_outside_model_dropped": 4995,
|
| 63 |
+
"rule": "query is subset/reordered to the model's gene list; zero-padding of absent model genes is refused unless --allow-missing-genes"
|
| 64 |
+
},
|
| 65 |
+
"readout": {
|
| 66 |
+
"batch_prefix": "",
|
| 67 |
+
"input_matrix_key": "generated_counts",
|
| 68 |
+
"input_n_cells": 168000,
|
| 69 |
+
"input_nonzero_fraction": 0.045026646825396824,
|
| 70 |
+
"input_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/sle_zs_s13.npz",
|
| 71 |
+
"input_npz_sha256": "06261f5965c80ea802f73d3bc312636b056ecaf8f2d8d603c6d8f57aae7fdc3d",
|
| 72 |
+
"input_row_sum_median": 2497.1824951171875,
|
| 73 |
+
"library_scale": 1.0,
|
| 74 |
+
"library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
|
| 75 |
+
"method_name": "generated_c1qx_sle_zs_s13",
|
| 76 |
+
"n_cells": 168000,
|
| 77 |
+
"n_genes": 6000,
|
| 78 |
+
"output_nonzero_fraction": 0.03531325892857143,
|
| 79 |
+
"output_row_sum_median": 2496.0,
|
| 80 |
+
"rule": "counts ~ Poisson(generated_counts * library_scale), independent per entry, single draw",
|
| 81 |
+
"seed": 20260916,
|
| 82 |
+
"subset_rows": 168000,
|
| 83 |
+
"subset_seed": null,
|
| 84 |
+
"unlabeled_category": "Unknown"
|
| 85 |
+
},
|
| 86 |
+
"query_build": null,
|
| 87 |
+
"model": {
|
| 88 |
+
"scanvi_model_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_model",
|
| 89 |
+
"model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
|
| 90 |
+
"model_manifest": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/MODEL_MANIFEST.json",
|
| 91 |
+
"held_out_summary": {
|
| 92 |
+
"l2_accuracy": 0.8692869740488788,
|
| 93 |
+
"l2_macro_f1": 0.8500925599737216,
|
| 94 |
+
"l1_accuracy": 0.9918367346938776,
|
| 95 |
+
"l1_macro_f1": 0.9715232379009036,
|
| 96 |
+
"pbmc5_other_accuracy": 0.9920886873267826,
|
| 97 |
+
"pbmc5_other_macro_f1": 0.9812088972148597
|
| 98 |
+
}
|
| 99 |
+
},
|
| 100 |
+
"label_counts": {
|
| 101 |
+
"celltype_l1_pred": {
|
| 102 |
+
"T cell": 106521,
|
| 103 |
+
"Monocyte": 21833,
|
| 104 |
+
"B cell": 19311,
|
| 105 |
+
"NK cell": 18324,
|
| 106 |
+
"DC": 1360,
|
| 107 |
+
"Other": 651
|
| 108 |
+
},
|
| 109 |
+
"aifi_l1": {
|
| 110 |
+
"T cell": 106521,
|
| 111 |
+
"Monocyte": 21833,
|
| 112 |
+
"B cell": 19311,
|
| 113 |
+
"NK cell": 18324,
|
| 114 |
+
"DC": 1360,
|
| 115 |
+
"Platelet": 225,
|
| 116 |
+
"Erythrocyte": 199,
|
| 117 |
+
"ILC": 192,
|
| 118 |
+
"Progenitor cell": 35
|
| 119 |
+
},
|
| 120 |
+
"aifi_l2": {
|
| 121 |
+
"Naive CD4 T cell": 48834,
|
| 122 |
+
"Memory CD4 T cell": 16919,
|
| 123 |
+
"CD14 monocyte": 13608,
|
| 124 |
+
"CD56dim NK cell": 13290,
|
| 125 |
+
"Naive CD8 T cell": 12123,
|
| 126 |
+
"Memory CD8 T cell": 10222,
|
| 127 |
+
"Memory B cell": 9840,
|
| 128 |
+
"gdT": 9020,
|
| 129 |
+
"Naive B cell": 7145,
|
| 130 |
+
"Treg": 5803,
|
| 131 |
+
"CD16 monocyte": 4750,
|
| 132 |
+
"Intermediate monocyte": 3475,
|
| 133 |
+
"CD56bright NK cell": 2844,
|
| 134 |
+
"Proliferating NK cell": 2190,
|
| 135 |
+
"MAIT": 1439,
|
| 136 |
+
"Transitional B cell": 1347,
|
| 137 |
+
"cDC2": 1170,
|
| 138 |
+
"Effector B cell": 894,
|
| 139 |
+
"CD8aa": 807,
|
| 140 |
+
"DN T cell": 793,
|
| 141 |
+
"Proliferating T cell": 561,
|
| 142 |
+
"Platelet": 225,
|
| 143 |
+
"Erythrocyte": 199,
|
| 144 |
+
"ILC": 192,
|
| 145 |
+
"pDC": 158,
|
| 146 |
+
"Plasma cell": 85,
|
| 147 |
+
"Progenitor cell": 35,
|
| 148 |
+
"ASDC": 21,
|
| 149 |
+
"cDC1": 11
|
| 150 |
+
}
|
| 151 |
+
},
|
| 152 |
+
"confidence": {
|
| 153 |
+
"mean_l2_max_prob": 0.9379609315547027,
|
| 154 |
+
"mean_l1_mass": 0.9888777136802673,
|
| 155 |
+
"frac_l2_max_prob_ge_0.5": 0.9837678571428572
|
| 156 |
+
},
|
| 157 |
+
"timings_s": {
|
| 158 |
+
"predict": 0.7,
|
| 159 |
+
"total": 1.9
|
| 160 |
+
},
|
| 161 |
+
"versions": {
|
| 162 |
+
"scvi-tools": "1.4.1",
|
| 163 |
+
"torch": "2.11.0+cu130",
|
| 164 |
+
"anndata": "0.12.19"
|
| 165 |
+
},
|
| 166 |
+
"device": "cpu",
|
| 167 |
+
"created_at_utc": "2026-10-04T14:10:14.473220+00:00"
|
| 168 |
+
}
|