Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/receipts/score.json +71 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/contrast.csv +14 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/per_donor.csv +26 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/summary.json +540 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/receipts/score.json
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{
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"state": "completed",
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"stage": "score",
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"at": "2026-10-15T11:42:08.265385+00:00",
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"outputs": [
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/arms/lora/deg_top50_lists.csv",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/arms/lora/labels/labels.manifest.json",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/arms/lora/labels/labels.parquet",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/contrast.csv",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/per_donor.csv",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/summary.json",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/scoring_support.json",
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"sha256": "68a737f6de32e7a92dc4d7e91474a742ec6a4aae22c9e4fed58d0d3e699085a0",
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"support_sha256": "b361deccb2e2b5da9fc4fcf8d3b558dc4ebefa14390ebba15e419ff8c351b9b8",
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"binding": {
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"arm": "lora",
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ji2025_chili/disease/draw0/lora.npz",
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"npz_sha256": "fba94878b514efea1019e36ad51e83fb58a81305e8b692137775563d44548b09",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ji2025_chili/disease/draw0/lora.log",
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"receipt_sha256": "92ec9b798db9f855576272e391ecb63c0a55e53bbf394a478383c9feae6daff2",
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"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/ji2025_chili/disease/draw0/lora/RUN.json",
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"source_binding_sha256": "9a34723dd42eb52a8cee11812d60017762a3c688989435325bba89c649f4d242",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ji2025_chili/disease/draw0/test_raw.npz",
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"condition_sha256": "ca5da7eba08208ca5e2ebf107830ad72db4a1e739698e0412fff48edf8d2b2b9",
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"checkpoint_sha256": "53488bb1133c0b5969d6094112798d7666e055f1dea3f630c8db1064d892a08b",
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"support_sha256": "b361deccb2e2b5da9fc4fcf8d3b558dc4ebefa14390ebba15e419ff8c351b9b8"
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},
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"reuse": {
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"source_summary": {
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/disease_width_comparison_20261015/ji2025_chili/draw0/score/summary.json",
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"bytes": 15664
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},
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"source_arm": "lora",
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"validated_support_sha256": "b361deccb2e2b5da9fc4fcf8d3b558dc4ebefa14390ebba15e419ff8c351b9b8",
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"annotation_reexecuted": false
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/contrast.csv
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arm,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,n_case_donors_obs,n_control_donors_obs,n_case_donors_gen,n_control_donors_gen,n_cells_obs,n_cells_gen,deg_scored,top50_overlap,top50_jaccard,obs_top_list_size,gen_top_list_size,n_sig_obs,n_sig_gen,top50_overlap_broadcast,top50_jaccard_broadcast,broadcast_top_list_size,n_sig_broadcast
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lora,T cell,mean_cp10k,3038,0.5318576611939548,0.2119702858993605,0.5153236409448303,0.1663490712781621,14,11,14,11,44851,18080,,,,,,,,,,,
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lora,T cell,pseudobulk_log1p_cpm,3038,0.158785526937719,0.3111080127833571,0.1393825832908705,0.0861846875303183,14,11,14,11,44851,18080,,,,,,,,,,,
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lora,B cell,mean_cp10k,3233,0.1660831852373693,0.1007393844730222,0.1560653117640351,0.1181135487366703,14,11,14,11,4424,2250,,,,,,,,,,,
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lora,B cell,pseudobulk_log1p_cpm,3233,0.008596932211882,0.0120726387704035,0.0076243322794547,0.0827754987942933,14,11,14,11,4424,2250,,,,,,,,,,,
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lora,Monocyte,mean_cp10k,3193,0.4207455642133876,0.3732268158395985,0.3707516482513127,0.2305605907007598,14,11,14,11,22847,9804,,,,,,,,,,,
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lora,Monocyte,pseudobulk_log1p_cpm,3193,0.2726016662389149,0.3506580485024196,0.2400856562557597,0.1427713795747045,14,11,14,11,22847,9804,,,,,,,,,,,
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lora,NK cell,mean_cp10k,3059,0.3046411903489653,0.1665379702415652,0.2854017514751144,0.1616943494618234,14,11,14,11,14219,4408,,,,,,,,,,,
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lora,NK cell,pseudobulk_log1p_cpm,3059,0.1029028619588094,0.1504832147417468,0.0922065815468584,0.079998526578488,14,11,14,11,14219,4408,,,,,,,,,,,
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lora,T cell,welch_top50_deg,5752,,,,,14,11,14,11,44851,18080,True,0.0,0.0,50.0,1.0,1831.0,1.0,0.0,0.0,4.0,4.0
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lora,B cell,welch_top50_deg,5752,,,,,14,11,14,11,4424,2250,True,0.0,0.0,9.0,0.0,9.0,0.0,0.0,0.0,4.0,4.0
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lora,Monocyte,welch_top50_deg,5752,,,,,14,11,14,11,22847,9804,True,0.0,0.0,10.0,0.0,10.0,0.0,0.0,0.0,4.0,4.0
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lora,NK cell,welch_top50_deg,5752,,,,,14,11,14,11,14219,4408,True,0.0,0.0,50.0,0.0,358.0,0.0,0.0,0.0,4.0,4.0
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| 14 |
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lora,DC,welch_top50_deg,5752,,,,,12,11,14,11,1176,1086,True,0.0,0.0,6.0,0.0,6.0,0.0,0.0,0.0,4.0,4.0
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/per_donor.csv
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arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
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| 2 |
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lora,N064_TOL,TOL,1500,2498,150,0.4673333333333333,0.6517213771016813,0.0766666666666666,0.044035228182546,0.252,0.1677341873498799,0.1313333333333333,0.0760608486789431,0.0286666666666666,0.010008006405124,0.044,0.0504403522818254,0.3816567921003468,0.3779557749494401,0.8566812123625087,13,False,0.9666666666666668,0.9466666666666668,0.9266666666666666,0.96,25.2,16.77341873498799,729.0,662.0
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lora,N064_FU1,FU1,1500,4659,150,0.6266666666666667,0.6396222365314446,0.0566666666666666,0.0165271517493024,0.1486666666666666,0.1386563640266151,0.0786666666666666,0.1916720326250268,0.0153333333333333,0.0047220433569435,0.074,0.0088001717106675,0.251921871646276,0.3574146776605954,0.8548475618612733,9,False,0.9533333333333334,0.6666666666666666,0.9066666666666666,0.9266666666666666,14.866666666666667,13.865636402661517,649.0,925.0
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| 4 |
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lora,N038_BC,BC,1500,2801,150,0.342,0.5608711174580507,0.0593333333333333,0.0046411995715815,0.3253333333333333,0.1656551231702963,0.1926666666666666,0.2170653338093538,0.0466666666666666,0.0342734737593716,0.034,0.0174937522313459,0.4865395692014757,0.2990892646419849,0.8732847128839789,5,False,0.9933333333333332,0.6866666666666666,0.9866666666666668,0.9333333333333332,32.53333333333333,16.565512317029633,970.0,1317.0
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lora,N038_AC,AC,1500,3976,150,0.3166666666666666,0.6830985915492958,0.078,0.0082997987927565,0.3473333333333333,0.1290241448692153,0.1626666666666666,0.1207243460764587,0.0353333333333333,0.0319416498993963,0.06,0.0269114688128772,0.7328638497652581,0.4382292825861123,0.8762238929015582,2,False,0.9466666666666668,0.94,0.96,0.9733333333333334,34.733333333333334,12.90241448692153,890.0,910.5
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| 6 |
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lora,N055_AC,AC,1500,4308,150,0.2846666666666667,0.340297121634169,0.064,0.0779944289693593,0.4906666666666666,0.324744661095636,0.088,0.2051996285979573,0.0286666666666666,0.0060352831940575,0.044,0.0457288765088208,0.3771067780872794,0.3381802929616731,0.8787860773206174,6,False,0.9733333333333334,0.8933333333333333,0.98,0.9933333333333332,49.06666666666666,32.47446610956361,1201.5,1139.5
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| 7 |
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lora,N136_TOL,TOL,1500,759,150,0.444,0.4861660079051383,0.048,0.1001317523056653,0.2913333333333333,0.1910408432147562,0.0646666666666666,0.0922266139657444,0.0293333333333333,0.0013175230566534,0.1226666666666666,0.1291172595520421,0.2566166007905138,0.3267042557350408,0.8592274342624536,5,False,0.98,0.56,0.9266666666666666,0.98,29.133333333333333,19.104084321475625,761.5,1837.0
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| 8 |
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lora,N136_FU1,FU1,1500,2927,150,0.4173333333333333,0.4246668944311582,0.0586666666666666,0.147249743764947,0.3373333333333333,0.193372053296891,0.068,0.0953194396993508,0.0286666666666666,0.0023915271609156,0.09,0.1370003416467372,0.3404728390843867,0.4367064028429944,0.8643838379903611,9,False,0.9666666666666668,0.8466666666666667,0.9533333333333334,0.9933333333333332,33.733333333333334,19.3372053296891,781.0,1501.0
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| 9 |
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lora,N128_BC,BC,1500,3902,150,0.3913333333333333,0.5158892875448488,0.074,0.0681701691440287,0.322,0.2942080984110712,0.1186666666666666,0.0784213223987698,0.038,0.0333162480779087,0.056,0.0099948744233726,0.2491119084230308,0.237517218766578,0.8762151432015457,1,True,0.9733333333333334,0.8533333333333334,0.92,0.9666666666666668,32.2,29.420809841107125,834.5,1088.0
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| 10 |
+
lora,N128_AC,AC,1500,2713,150,0.384,0.5488389237007003,0.0793333333333333,0.0652414301511242,0.3133333333333333,0.2790269074824917,0.1433333333333333,0.070770364909694,0.0346666666666666,0.0294876520457058,0.0453333333333333,0.0066347217102838,0.3296778474014006,0.2595394391709072,0.8721649645416198,3,False,0.9733333333333334,0.7666666666666667,0.9733333333333334,0.96,31.333333333333336,27.90269074824917,849.0,1181.0
|
| 11 |
+
lora,N129_BC,BC,1500,3087,150,0.3733333333333333,0.5963718820861678,0.0726666666666666,0.1130547457078069,0.328,0.0835762876579203,0.15,0.1814058956916099,0.0373333333333333,0.0132815030774214,0.0386666666666666,0.0123096857790735,0.5896650469711693,0.3871201592227091,0.8727931767768953,10,False,0.98,0.8533333333333334,0.98,0.9866666666666668,32.800000000000004,8.35762876579203,959.5,1059.0
|
| 12 |
+
lora,N129_AC,AC,1500,2798,150,0.332,0.7076483202287348,0.062,0.0493209435310936,0.34,0.079699785561115,0.1893333333333333,0.1336669049320943,0.0326666666666666,0.0228734810578985,0.044,0.0067905646890636,0.7512966404574697,0.4740323616378469,0.8669804370700627,12,False,0.98,0.96,0.98,0.9866666666666668,34.0,7.969978556111508,898.0,759.0
|
| 13 |
+
lora,N147_TOL,TOL,1500,3210,150,0.548,0.4420560747663551,0.04,0.0080996884735202,0.2573333333333333,0.4193146417445483,0.1073333333333333,0.0710280373831775,0.0153333333333333,0.0065420560747663,0.032,0.0529595015576324,0.3658816199376947,0.4139348365629441,0.8688829973397111,9,False,0.98,0.7466666666666667,0.9533333333333334,0.9466666666666668,25.73333333333333,41.93146417445483,1099.0,1461.5
|
| 14 |
+
lora,N158_AC,AC,1500,3749,150,0.4326666666666666,0.2461989863963723,0.042,0.0266737796745798,0.338,0.6295012003200854,0.12,0.0493464923979727,0.0333333333333333,0.0248066150973592,0.034,0.0234729261136303,0.5830024006401707,0.8296165589099086,0.8677517412535415,5,False,0.9933333333333332,0.8933333333333333,0.9866666666666668,0.9866666666666668,33.800000000000004,62.95012003200854,1124.0,1047.0
|
| 15 |
+
lora,N159_BC,BC,1500,3779,150,0.7373333333333333,0.6996559936491136,0.0306666666666666,0.0185234188938872,0.066,0.0812384228631913,0.098,0.173590897062715,0.0313333333333333,0.0140248743053717,0.0366666666666666,0.012966393225721,0.1816586398518125,0.4410431567204212,0.8437719779378781,1,True,0.9466666666666668,0.9266666666666666,0.9133333333333332,0.92,6.6000000000000005,8.123842286319132,854.5,1045.0
|
| 16 |
+
lora,N001_TOL,TOL,1500,5658,150,0.6326666666666667,0.51926475786497,0.078,0.0337575114881583,0.1206666666666666,0.2106751502297631,0.0986666666666666,0.2163308589607635,0.04,0.0037115588547189,0.03,0.016260162601626,0.4153453517143867,0.1319697438356509,0.8371710607233346,19,False,0.9666666666666668,0.64,0.9533333333333334,0.88,12.066666666666666,21.06751502297632,732.0,787.5
|
| 17 |
+
lora,N001_FU1,FU1,1500,4547,150,0.3506666666666667,0.2960193534198372,0.068,0.0657576424015834,0.3873333333333333,0.4882340004398504,0.1166666666666666,0.135913789311634,0.0346666666666666,0.0010996261271167,0.0426666666666666,0.012975588299978,0.2402955795029689,0.5380476132456627,0.8799636267330817,3,False,0.9666666666666668,0.58,0.96,0.92,38.73333333333333,48.823400043985046,1104.0,1165.0
|
| 18 |
+
lora,N002_TOL,TOL,1500,6318,150,0.48,0.4157961380183602,0.0713333333333333,0.0577714466603355,0.2413333333333333,0.3779677113010446,0.1506666666666666,0.1179170623615068,0.0253333333333333,0.0201012978790756,0.0313333333333333,0.0104463437796771,0.2732687559354225,0.3320124203615185,0.8613882592227811,13,False,0.9733333333333334,0.72,0.9333333333333332,0.92,24.133333333333333,37.79677113010446,800.0,933.5
|
| 19 |
+
lora,N002_FU1,FU1,1500,4975,150,0.668,0.316180904522613,0.066,0.0727638190954773,0.1086666666666666,0.4558793969849246,0.0933333333333333,0.1226130653266331,0.016,0.0227135678391959,0.048,0.0098492462311557,0.7799396984924624,0.5230450765198029,0.842568937297052,20,False,0.98,0.52,0.9533333333333334,0.74,10.866666666666664,45.58793969849246,711.0,979.0
|
| 20 |
+
lora,N005_BC,BC,1500,6359,150,0.502,0.7200817738638151,0.0526666666666666,0.0501651203019342,0.254,0.1144834093410913,0.098,0.0989149237301462,0.0253333333333333,0.0077056140902657,0.068,0.0086491586727472,0.4379933951879227,0.4953276467168827,0.8709272586431598,4,False,0.9666666666666668,0.8933333333333333,0.9533333333333334,0.9,25.4,11.448340934109137,815.5,782.0
|
| 21 |
+
lora,N005_AC,AC,1500,3433,150,0.7593333333333333,0.8100786484124672,0.0486666666666666,0.0151471016603553,0.0533333333333333,0.0795222837168657,0.096,0.0824351878823186,0.0273333333333333,0.0101951645790853,0.0153333333333333,0.0026216137489076,0.1538685309253326,0.675321395814187,0.8414096711494841,6,False,0.9733333333333334,0.62,0.9466666666666668,0.88,5.333333333333334,7.952228371686572,666.0,1126.0
|
| 22 |
+
lora,N022_TOL,TOL,1500,3651,150,0.2913333333333333,0.4864420706655711,0.064,0.0369761709120788,0.4506666666666666,0.0457408929060531,0.1106666666666666,0.4182415776499589,0.0353333333333333,0.0,0.048,0.0125992878663379,1.0053672966310598,0.5320299851087325,0.8408126437315369,24,False,0.9733333333333334,0.3,0.9933333333333332,0.94,45.06666666666666,4.574089290605313,1012.0,1410.0
|
| 23 |
+
lora,N022_FU1,FU1,1500,2463,150,0.586,0.4847746650426309,0.0673333333333333,0.0487210718635809,0.1426666666666666,0.2025984571660576,0.1326666666666666,0.2533495736906211,0.0206666666666666,0.0,0.0506666666666666,0.0105562322371092,0.3612293950466909,0.202245977190057,0.8511108432194423,14,False,0.98,0.4666666666666667,0.9533333333333334,0.9533333333333334,14.266666666666666,20.259845716605763,677.5,1459.0
|
| 24 |
+
lora,N035_TOL,TOL,1500,1598,150,0.4766666666666667,0.2853566958698373,0.042,0.0168961201501877,0.2453333333333333,0.3110137672090112,0.176,0.3404255319148936,0.0306666666666666,0.013767209011264,0.0293333333333333,0.032540675844806,0.4666266166040884,0.5092117579012594,0.8628671939542232,15,False,0.98,0.28,0.9866666666666668,0.94,24.53333333333333,31.10137672090113,1020.5,1855.5
|
| 25 |
+
lora,N043_TOL,TOL,1500,2074,150,0.726,0.3548698167791707,0.044,0.0573770491803278,0.098,0.0458052073288331,0.056,0.4811957569913211,0.02,0.0028929604628736,0.056,0.0578592092574734,0.8808640308582449,0.728022429812273,0.8290971938219948,25,False,0.98,0.3333333333333333,0.9266666666666666,0.9266666666666666,9.8,4.580520732883317,621.5,1315.5
|
| 26 |
+
lora,N043_FU1,FU1,1500,3437,150,0.4833333333333333,0.1638056444573756,0.056,0.0677916787896421,0.2766666666666666,0.5728833284841431,0.0973333333333333,0.148967122490544,0.0133333333333333,0.0034914169333721,0.0733333333333333,0.0430608088449228,0.7192842595286587,0.7356501997739635,0.8561188457120921,14,False,0.9466666666666668,0.4266666666666667,0.9733333333333334,0.9,27.666666666666668,57.28833284841431,735.0,1422.0
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw0/lora/score/summary.json
ADDED
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| 1 |
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{
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| 2 |
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| 3 |
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| 4 |
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| 5 |
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|
| 6 |
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| 7 |
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| 8 |
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| 9 |
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| 10 |
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| 11 |
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"--arm",
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| 12 |
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| 13 |
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