Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot0/state_types.tsv

@@ -0,0 +1,28 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	134
+B cell|Memory B cell	B cell	1011
+B cell|Naive B cell	B cell	424
+B cell|Transitional B cell	B cell	112
+DC|cDC2	DC	326
+DC|pDC	DC	65
+Monocyte|CD14 monocyte	Monocyte	1584
+Monocyte|CD16 monocyte	Monocyte	331
+Monocyte|Intermediate monocyte	Monocyte	190
+NK cell|CD56bright NK cell	NK cell	398
+NK cell|CD56dim NK cell	NK cell	1313
+NK cell|Proliferating NK cell	NK cell	441
+Other|Erythrocyte	Other	23
+Other|ILC	Other	55
+T cell|CD8aa	T cell	701
+T cell|DN T cell	T cell	137
+T cell|MAIT	T cell	533
+T cell|Memory CD4 T cell	T cell	2384
+T cell|Memory CD8 T cell	T cell	1602
+T cell|Naive CD4 T cell	T cell	4084
+T cell|Naive CD8 T cell	T cell	2486
+T cell|Treg	T cell	632
+T cell|gdT	T cell	1291
+B cell|minor	B cell	14
+DC|minor	DC	26
+Other|minor	Other	19
+T cell|minor	T cell	13

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot0_full/SPLIT.json

@@ -0,0 +1,151 @@
+{
+ "dataset": "immicro",
+ "kind": "fewshot",
+ "idx": 0,
+ "reference": [
+  "HS27",
+  "HS45",
+  "HS54",
+  "HS73",
+  "HS74"
+ ],
+ "mixture": [
+  "HS1",
+  "HS2",
+  "HS3",
+  "HS4",
+  "HS6",
+  "HS7",
+  "HS8",
+  "HS9",
+  "HS10",
+  "HS11",
+  "HS12",
+  "HS13",
+  "HS14",
+  "HS15",
+  "HS16",
+  "HS17",
+  "HS18",
+  "HS19",
+  "HS20",
+  "HS21",
+  "HS23",
+  "HS24",
+  "HS25",
+  "HS26",
+  "HS28",
+  "HS29",
+  "HS30",
+  "HS31",
+  "HS32",
+  "HS34",
+  "HS35",
+  "HS36",
+  "HS37",
+  "HS38",
+  "HS39",
+  "HS40",
+  "HS41",
+  "HS42",
+  "HS43",
+  "HS44",
+  "HS46",
+  "HS47",
+  "HS48",
+  "HS49",
+  "HS50",
+  "HS51",
+  "HS52",
+  "HS53",
+  "HS55",
+  "HS56",
+  "HS57",
+  "HS58",
+  "HS59",
+  "HS60",
+  "HS61",
+  "HS62",
+  "HS63",
+  "HS64",
+  "HS65",
+  "HS66",
+  "HS67",
+  "HS68",
+  "HS69",
+  "HS70",
+  "HS71",
+  "HS72",
+  "HS75",
+  "HS76",
+  "HS77",
+  "HS78",
+  "HS79",
+  "HS80",
+  "HS81",
+  "HS82",
+  "HS83",
+  "HS84",
+  "HS85",
+  "HS86",
+  "HS87",
+  "HS88",
+  "HS89",
+  "HS90",
+  "HS91",
+  "HS92",
+  "HS93",
+  "HS94",
+  "HS95",
+  "HS96",
+  "HS97",
+  "HS98",
+  "HS100",
+  "HS101",
+  "HS102",
+  "HS103",
+  "HS104",
+  "HS105",
+  "HS106",
+  "HS107",
+  "HS108",
+  "HS109",
+  "HS110",
+  "HS111"
+ ],
+ "train_donors": [
+  "HS27",
+  "HS45",
+  "HS54",
+  "HS73",
+  "HS74"
+ ],
+ "run_json_check": true,
+ "n_reference_samples": 5,
+ "n_mixture_samples": 102,
+ "reference_cells": 20329,
+ "states": 27,
+ "states_merged_minor": 6,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 15404,
+ "genes_kept": 14209,
+ "genes_dropped_not_bulk_valid": 17,
+ "genes_dropped_zero_reference": 1178,
+ "gene_mode": "full",
+ "aggregates_sha256": "4215e1c95c8ff835ea4867157ac47c5ae1b7cc8c51c4f4b5457e4c2e537b9aca",
+ "files": {
+  "reference.tsv.gz": "80c22911fae7d476733eede6df8030aa7847cc6a6bc3be819fdc4a0c04bc44f2",
+  "state_types.tsv": "05b6844a6412917b669cdad0061d711ea907f3ca0974a35526b9c65cb90be7e1",
+  "mixture.tsv.gz": "bcd54ee94db780d7a003a02b1c5e2cf7c1abdbde130489e36e72bf03d977a0b0"
+ },
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot0_full/state_types.tsv

@@ -0,0 +1,28 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	134
+B cell|Memory B cell	B cell	1011
+B cell|Naive B cell	B cell	424
+B cell|Transitional B cell	B cell	112
+DC|cDC2	DC	326
+DC|pDC	DC	65
+Monocyte|CD14 monocyte	Monocyte	1584
+Monocyte|CD16 monocyte	Monocyte	331
+Monocyte|Intermediate monocyte	Monocyte	190
+NK cell|CD56bright NK cell	NK cell	398
+NK cell|CD56dim NK cell	NK cell	1313
+NK cell|Proliferating NK cell	NK cell	441
+Other|Erythrocyte	Other	23
+Other|ILC	Other	55
+T cell|CD8aa	T cell	701
+T cell|DN T cell	T cell	137
+T cell|MAIT	T cell	533
+T cell|Memory CD4 T cell	T cell	2384
+T cell|Memory CD8 T cell	T cell	1602
+T cell|Naive CD4 T cell	T cell	4084
+T cell|Naive CD8 T cell	T cell	2486
+T cell|Treg	T cell	632
+T cell|gdT	T cell	1291
+B cell|minor	B cell	14
+DC|minor	DC	26
+Other|minor	Other	19
+T cell|minor	T cell	13

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot0_pseudocheck/state_types.tsv

@@ -0,0 +1,28 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	134
+B cell|Memory B cell	B cell	1011
+B cell|Naive B cell	B cell	424
+B cell|Transitional B cell	B cell	112
+DC|cDC2	DC	326
+DC|pDC	DC	65
+Monocyte|CD14 monocyte	Monocyte	1584
+Monocyte|CD16 monocyte	Monocyte	331
+Monocyte|Intermediate monocyte	Monocyte	190
+NK cell|CD56bright NK cell	NK cell	398
+NK cell|CD56dim NK cell	NK cell	1313
+NK cell|Proliferating NK cell	NK cell	441
+Other|Erythrocyte	Other	23
+Other|ILC	Other	55
+T cell|CD8aa	T cell	701
+T cell|DN T cell	T cell	137
+T cell|MAIT	T cell	533
+T cell|Memory CD4 T cell	T cell	2384
+T cell|Memory CD8 T cell	T cell	1602
+T cell|Naive CD4 T cell	T cell	4084
+T cell|Naive CD8 T cell	T cell	2486
+T cell|Treg	T cell	632
+T cell|gdT	T cell	1291
+B cell|minor	B cell	14
+DC|minor	DC	26
+Other|minor	Other	19
+T cell|minor	T cell	13