Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261013T142727Z-trunk4x-sepsis-results/diffusion/dataset/server_1/model8/plans/trunk4x_lora_sepsis_20261013/COMPARISON.csv

@@ -0,0 +1,21 @@
+draw,arm,composition_l1,precision,coverage,expression_r,logfc_r,partial_r,deg_overlap,training_seconds,base_parameters,trainable_parameters
+0,trunk4x,0.4711350835957432,0.9572294372294372,0.7705627705627706,0.9007028666273407,0.4207790147564834,0.3933630639381285,4,337.9,239955168.0,2217824.0
+0,panel_matched_1x,0.514342704577763,0.9362770562770563,0.6565367965367965,0.8665679225558041,0.4003165241351967,0.3791815852409771,1,115.5,54185184.0,1296224.0
+0,current_f01,0.4712375480588038,0.9211255411255411,0.6931601731601732,0.8689549933411863,0.4386056130047654,0.4094734074967484,8,113.5,54185184.0,1296224.0
+0,scsemi,0.6750766405241608,0.7974891774891775,0.06277056277056277,0.6002728576110643,0.41167747152918577,0.3510677816139661,1,,,
+1,trunk4x,0.43329756066438424,0.9698701298701299,0.7604329004329005,0.9206234536837348,0.1347965178329766,0.049627475219132265,18,338.5,239955168.0,2217824.0
+1,panel_matched_1x,0.43898927829488765,0.9412121212121212,0.6304761904761905,0.8767428297133143,0.193186186173414,0.10266685039180792,19,109.4,54185184.0,1296224.0
+1,current_f01,0.4710788829139354,0.9120346320346321,0.6574891774891775,0.8804421482956738,0.0902994227546712,-0.009721808554671751,22,104.9,54185184.0,1296224.0
+1,scsemi,0.5275352787183932,0.7534199134199134,0.08346320346320346,0.6596070416918233,0.33180901996420575,0.2232025945858192,3,,,
+2,trunk4x,0.49872498326571074,0.9568831168831169,0.8090909090909091,0.9062477326994645,0.28389454265614456,0.26513820779557573,28,338.6,239955168.0,2217824.0
+2,panel_matched_1x,0.5473525143947433,0.9202597402597402,0.7141125541125541,0.867448874733446,0.3140605382176318,0.29747879011274186,25,123.5,54185184.0,1296224.0
+2,current_f01,0.4990690207608889,0.9151515151515152,0.7490909090909091,0.8766351190167497,0.32777069988518615,0.318917014621307,29,116.1,54185184.0,1296224.0
+2,scsemi,0.5800074032807602,0.7902164502164503,0.0851948051948052,0.66953552703292,0.3186065287808404,0.2877592488182093,3,,,
+3,trunk4x,0.42999587836934067,0.9506493506493506,0.7020779220779221,0.9158618800123903,0.19789621982451044,0.1132941331553743,13,336.9,239955168.0,2217824.0
+3,panel_matched_1x,0.4717156403718366,0.900952380952381,0.6379220779220779,0.8748560624137552,0.29343949402641345,0.20631102527049858,16,122.9,54185184.0,1296224.0
+3,current_f01,0.49472545042201455,0.8787878787878788,0.6577489177489177,0.8693268660387236,0.4224891784589408,0.3697541328887763,19,112.3,54185184.0,1296224.0
+3,scsemi,0.6576542123801377,0.6643290043290043,0.08943722943722944,0.6527431045677237,0.526407495843098,0.4644392569488011,16,,,
+4,trunk4x,0.39319500415563446,0.9391341991341992,0.7782683982683982,0.9156575823928236,0.34173220009876365,0.2918664018592643,9,339.4,239955168.0,2217824.0
+4,panel_matched_1x,0.44383871911917694,0.898008658008658,0.6328138528138528,0.8756138922583293,0.4226723495499459,0.3885167174749205,7,108.8,54185184.0,1296224.0
+4,current_f01,0.3904730011002411,0.8873593073593073,0.69004329004329,0.8755055881757373,0.49283470083466263,0.4601246764699851,17,105.3,54185184.0,1296224.0
+4,scsemi,0.6174484516957757,0.6821645021645022,0.08216450216450216,0.6455186458513533,0.4582471933843024,0.3609813630288017,2,,,

paper-releases/pbisc-diffusion/updates/20261013T142727Z-trunk4x-sepsis-results/diffusion/dataset/server_1/model8/plans/trunk4x_lora_sepsis_20261013/COMPARISON_MEANS.csv

@@ -0,0 +1,5 @@
+arm,composition_l1,precision,coverage,expression_r,logfc_r,partial_r,deg_overlap,training_seconds,base_parameters,trainable_parameters
+current_f01,0.46531678065117676,0.9028917748917749,0.6895064935064935,0.8741729429736141,0.3543999229876452,0.309709484584429,19.0,110.42,54185184.0,1296224.0
+panel_matched_1x,0.4832477713516815,0.9193419913419912,0.6543722943722944,0.8722459163349298,0.3247350184205204,0.2748309936981892,13.6,116.02000000000001,54185184.0,1296224.0
+scsemi,0.6115443973198456,0.7375238095238095,0.0806060606060606,0.6455354353509769,0.40934954190032646,0.3374900489991195,5.0,,,
+trunk4x,0.4452697020101627,0.9547532467532468,0.7640865800865801,0.9118187030831507,0.27581969903377573,0.22265785639349503,14.4,338.26,239955168.0,2217824.0

paper-releases/pbisc-diffusion/updates/20261013T142727Z-trunk4x-sepsis-results/diffusion/dataset/server_1/model8/plans/trunk4x_lora_sepsis_20261013/DONOR_PAIRED_CI.csv

@@ -0,0 +1,13 @@
+arm,baseline,estimate,ci_low,ci_high,n_donors,n_paired_samples,n_excluded_nonfinite_pairs,n_boot,seed,bootstrap_unit,metric
+trunk4x,panel_matched_1x,-0.03758793038927989,-0.055533247747285304,-0.018947536542550717,82,385,0,2000,20261013,donor_all_draws_and_visits,comp_l1
+trunk4x,current_f01,-0.017861023331784506,-0.043451908957152764,0.008138820559100583,82,385,0,2000,20261013,donor_all_draws_and_visits,comp_l1
+trunk4x,scsemi,-0.1629518176718764,-0.20679477762682016,-0.12209139224236884,82,385,0,2000,20261013,donor_all_draws_and_visits,comp_l1
+trunk4x,panel_matched_1x,0.03498373983739839,0.02939088753387534,0.0408765921409214,82,385,0,2000,20261013,donor_all_draws_and_visits,precision
+trunk4x,current_f01,0.05194986449864502,0.04603607723577239,0.05751524390243905,82,385,0,2000,20261013,donor_all_draws_and_visits,precision
+trunk4x,scsemi,0.21984417344173446,0.19893516260162608,0.24159712059620597,82,385,0,2000,20261013,donor_all_draws_and_visits,precision
+trunk4x,panel_matched_1x,0.11198373983739839,0.09826565040650405,0.12703163956639565,82,385,0,2000,20261013,donor_all_draws_and_visits,coverage
+trunk4x,current_f01,0.07582249322493227,0.0653564024390244,0.0868179539295393,82,385,0,2000,20261013,donor_all_draws_and_visits,coverage
+trunk4x,scsemi,0.6847073170731708,0.6542973238482386,0.7136984078590787,82,385,0,2000,20261013,donor_all_draws_and_visits,coverage
+trunk4x,panel_matched_1x,0.041073816611199056,0.03807225858271507,0.04413390118330256,82,385,0,2000,20261013,donor_all_draws_and_visits,pb_r
+trunk4x,current_f01,0.04071615240704794,0.037473639372274735,0.04394224022980305,82,385,0,2000,20261013,donor_all_draws_and_visits,pb_r
+trunk4x,scsemi,0.2618998592064041,0.25308846522693507,0.2714062766232258,82,385,0,2000,20261013,donor_all_draws_and_visits,pb_r

paper-releases/pbisc-diffusion/updates/20261013T142727Z-trunk4x-sepsis-results/diffusion/dataset/server_1/model8/plans/trunk4x_lora_sepsis_20261013/RESULT.json

@@ -0,0 +1,16 @@
+{
+  "phase": "complete",
+  "draws": 5,
+  "arms": 4,
+  "new_pretraining": false,
+  "new_adapters": 10,
+  "comparison": "Same-panel x1 vs trunkx4 is primary; current_f01 is a different-panel baseline. All expression scores use common4258 genes.",
+  "table": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/trunk4x_lora_sepsis_20261013/COMPARISON.csv",
+  "details": [
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/trunk4x_lora_sepsis_20261013/scores/draw0/summary.json",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/trunk4x_lora_sepsis_20261013/scores/draw1/summary.json",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/trunk4x_lora_sepsis_20261013/scores/draw2/summary.json",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/trunk4x_lora_sepsis_20261013/scores/draw3/summary.json",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/trunk4x_lora_sepsis_20261013/scores/draw4/summary.json"
+  ]
+}