Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/TABLE_fewshot_full.csv

@@ -0,0 +1,26 @@
+cohort,draw,bp_l1_final,bp_l1_first,lora_l1,bp_r,bp_r_covered,lora_r,broadcast_r,broadcast_r_covered,bp_partial,lora_partial,bp_deg,lora_deg,broadcast_deg,zs_cal_l1,zs_cal_r,zs_cal_deg
+immicro,0,0.7007916840315994,0.7095725570550513,0.18149050759378063,,,,,,,,,,,0.2026992824928413,,
+immicro,1,0.5867840853021318,0.5568722574151432,0.1566780422080866,,,,,,,,,,,0.20974304102811556,,
+immicro,2,0.4799919108625404,0.42350657413858,0.17248763359752534,,,,,,,,,,,0.18326882744012876,,
+immicro,3,0.5433864890686753,0.34901299827821086,0.18654520396343544,,,,,,,,,,,0.2063535553111851,,
+immicro,4,0.6570417646897321,0.7111605997430848,0.18059655915509124,,,,,,,,,,,0.21209628232863803,,
+ye2026_sepsis,0,0.6886283946002517,0.4463496550141442,0.4723364713369038,0.2568321962975612,0.27585739083543653,0.4359905652333528,0.3359901153517466,0.2566751884150537,0.11528473312597379,0.4060106147529024,26.0,7.0,23.0,0.4540619186566272,0.06663278314625948,13.0
+ye2026_sepsis,1,0.7545625036164484,0.40696664594222093,0.4725655492172997,0.1973279877442922,0.21136473813096954,0.08123703391754132,0.27941436238089834,0.20176471635222232,0.07467956638801354,-0.018935679613692524,30.0,16.0,20.0,0.5221879948489522,0.08485199604084404,10.0
+ye2026_sepsis,2,0.673874617567153,0.436135409514162,0.4986968896699433,0.2654125351120938,0.2826594932185867,0.32721881191208096,0.3386821732452143,0.26922440985482304,0.11483895518121781,0.31447561738686153,26.0,26.0,18.0,0.4078394679946789,0.16980973770431268,10.0
+ye2026_sepsis,3,0.6584478375412718,0.49935002903888365,0.4968788955478774,0.2748463496313776,0.29289624841134965,0.4108841123350609,0.3264466405549955,0.25480636308287835,0.12531483062765006,0.3622128751991822,25.0,17.0,19.0,0.4245354784516496,0.09715870707096523,6.0
+ye2026_sepsis,4,0.44194685595873645,0.9281637213458136,0.39049012270725986,0.21151027451804771,0.226319434007386,0.49526136963540107,0.3195942137906433,0.23992076506989504,0.0428777909634605,0.4597246910197378,28.0,16.0,20.0,0.42094390936735937,0.0597261589524896,8.0
+ji2025_chili,0,0.897833546244817,1.0604240102209128,0.46942970758493824,0.1861628716144019,0.2091092566585711,0.38697985726899736,0.21311861411338662,0.20508643810380944,0.039991272520911975,0.36588903106531123,0.0,0.0,0.0,0.5151446979886816,0.11356580338558689,0.0
+ji2025_chili,1,0.8304872372823429,0.7624377928646932,0.3891842501829222,0.1740728741562068,0.19082769576334802,0.27568480061697936,0.20791984755382747,0.19804150653486854,0.026733915722389756,0.2420147625491504,2.0,1.0,0.0,0.5062036715725622,0.05364414433733922,0.0
+ji2025_chili,2,1.139290942018029,1.0689465254196084,0.5825794078861584,0.1965793167782156,0.21794799556774577,0.28938101620694295,0.263723888008903,0.22094843630165412,0.0072414506076920356,0.24803917247992743,2.0,0.0,5.0,0.5290193355212194,0.23055486304734635,0.0
+ji2025_chili,3,0.9013817112818979,0.7903252091857786,0.4487906027467767,0.20088045170833527,0.21895832210256228,0.4410983924408845,0.2577780039471977,0.20036481319345337,0.02455623630548386,0.39982215110012487,0.0,0.0,0.0,0.4913179216867248,0.23160934103995254,0.0
+ji2025_chili,4,0.9466385287537468,1.0782392660957625,0.6754540168870949,0.20855067405616556,0.22223209873735827,0.2725492074488929,0.2254541110690231,0.20567177326138197,0.06023029706134373,0.2467295164617603,6.0,0.0,0.0,0.5272117580098429,0.07003406425395778,0.0
+imperial_eskd,0,0.8957788100091341,0.8765853960075755,0.478123841402283,0.5470924059966005,0.5628313966391009,0.7798976158583719,0.6675205927010471,0.6421025910411589,0.14182291896129892,0.6572469324283057,69.0,116.0,71.0,0.5320985090007574,0.7024318575486699,104.0
+imperial_eskd,1,0.8669666123219886,0.7828028234686116,0.5160151799648663,0.6011240709020645,0.6171797170441768,0.7570901930571807,0.6611787175621116,0.6392773401191326,0.16810212249149087,0.6045509566158934,84.0,119.0,86.0,0.5116067980257175,0.6607779089412783,104.0
+imperial_eskd,2,1.0746755972820878,0.9140352155911764,0.5117644876225123,0.6262155054888472,0.6427760822631663,0.7139546009415169,0.6433613217171205,0.6214466618353787,0.2452434738376227,0.5764372157359006,66.0,103.0,65.0,0.4736586954171625,0.6695480865844681,96.0
+imperial_eskd,3,0.952439303710189,0.7721033215822146,0.5275199844470723,0.5854045807968098,0.599454910013415,0.7455905986374256,0.6538959233815048,0.6314051959325884,0.17783522904041,0.6007400715066787,61.0,117.0,76.0,0.5126961412851408,0.6559303794074177,104.0
+imperial_eskd,4,1.0185576195402575,0.877165890125515,0.48142813711177446,0.6282271395994876,0.6456639661993082,0.7492433446082651,0.6565426449733607,0.6340865519335486,0.20003452036960517,0.575230848198632,82.0,113.0,76.0,0.50108329954581,0.6913143741089167,111.0
+giroux2022,0,1.823568204154302,1.760300271065443,0.27193277679338645,0.32005331944484905,0.32210509323752057,0.243392212681724,0.4709654147613206,0.4703882003663197,0.041926780978093464,0.15035969319388034,0.0,0.0,0.0,0.27177224639619263,0.11201111078574608,0.0
+giroux2022,1,1.7796487879351197,1.7057827896282756,0.22320689222847964,0.322615216302418,0.324889934518131,0.35634959703435354,0.5012527613870964,0.5013392952006742,0.0674219104283513,0.2523250741286013,0.0,1.0,0.0,0.33804778238014854,0.3291842953083055,0.0
+giroux2022,2,1.8513410332082703,1.6162854136223028,0.2907494763185344,0.3505858518250693,0.352626835275316,0.230513969445487,0.39643909018360535,0.39718518838668054,0.12928822148729102,0.15040912208962715,1.0,0.0,0.0,0.2518782502011983,0.12294495954442436,0.0
+giroux2022,3,1.8433952838578165,1.302936224569384,0.2688359990061283,0.4037329126226964,0.40616851567557477,0.24186295766157903,0.4657480400911531,0.46502199547649703,0.17056815748180337,0.14697551642627654,0.0,0.0,0.0,0.3590205642243967,0.13512758815407414,0.0
+giroux2022,4,1.7394178030068272,0.8918817885623647,0.2274734478129418,0.4600865296295808,0.46209174837758643,0.41085265458568265,0.6280870820074911,0.6293022636855459,0.17404564011140683,0.24279747694617004,0.0,0.0,0.0,0.21935774353902068,0.4388308420922099,0.0

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/cv_pooled/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,2886,0.36465002785036604,0.5864764503055301,-0.2968609755958484,0.8425745313201148
+zero_filled,T cell,pseudobulk_log1p_cpm,2886,0.41015657090442276,0.6077451868574512,-0.19827540692372148,0.822311011574319
+zero_filled,B cell,mean_cp10k,3030,0.39188743861878544,0.48025603753384744,0.16626857364395123,0.5655585989582008
+zero_filled,B cell,pseudobulk_log1p_cpm,3030,0.22431013494577517,0.4644022343428308,-0.0018841605392629869,0.4861482557077403
+zero_filled,Monocyte,mean_cp10k,3034,0.6866426751313327,0.6794468550874515,0.3293316871260322,0.7947300980319411
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3034,0.5964525209678716,0.6731923266540611,0.10880812893416512,0.8171038749397325
+zero_filled,NK cell,mean_cp10k,2931,0.4047297836923995,0.554884628817489,0.03028893068064002,0.6968233475231197
+zero_filled,NK cell,pseudobulk_log1p_cpm,2931,0.3582211798343254,0.5368131432639086,0.09246849183719932,0.5455077067901324
+covered,T cell,mean_cp10k,2880,0.3689625185047179,0.5863517003823436,-0.30059605761379676,0.8488091820197209
+covered,T cell,pseudobulk_log1p_cpm,2880,0.4364663673124974,0.6072260560758375,-0.22864921706488328,0.8675718654047104
+covered,B cell,mean_cp10k,3024,0.39387118743925437,0.48075195180652375,0.16632135515821575,0.570036688877156
+covered,B cell,pseudobulk_log1p_cpm,3024,0.22863645419069833,0.46474654537117155,-0.0039360664566705445,0.4984604829023544
+covered,Monocyte,mean_cp10k,3028,0.6898402214232694,0.681109057722853,0.3289741821739431,0.8012012798812611
+covered,Monocyte,pseudobulk_log1p_cpm,3028,0.6388808503511586,0.6731614136688666,0.12877664965353774,0.8825569623022779
+covered,NK cell,mean_cp10k,2925,0.40856661065509353,0.5547742721089517,0.03180169690953204,0.7025136486212137
+covered,NK cell,pseudobulk_log1p_cpm,2925,0.37123083901506854,0.5367895699235897,0.09792787966775544,0.5645272636650979

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/cv_pooled/per_donor.csv

@@ -0,0 +1,25 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
+450905_d0,mild,0.7874288054702048,0.8333347504453757,0.5149207716648913,0.46441272556381563,0.2772030210799233,0.7261026136400028,0.25277398558368935,0.30943523841731485,1.0105904034881893e-05,1.0871678098513485e-05,0.036185322962461956,0.23220875756136364,0.23509596791510554,0.4293202570172472,0.019648926314582957,0.02422090962071647,0.12089956036523504,1.1657804731759508e-05,5.685883564374588e-07,0.009976327358809604,0.022017938775284046,0.48789769661403376,0.09418329387893135
+450905_d14,mild,1.010887562205689,0.5896528100886329,0.6213919170475146,0.2987141413134982,0.2141714594302687,0.7354588158735599,0.24325135432304712,0.4422843256379101,0.007108401971878099,0.02185239530987254,0.02929661131362225,0.1163560093227568,0.09661319044560389,0.27420008100445525,0.07005278756492019,0.06627908057013135,0.15782368030241664,0.00281340973187853,1.5375221604818644e-06,0.02983664101525584,0.06821057553500666,0.5720024418291845,0.06655866072633995
+0B943B_d0,mild,1.7150496458876194,0.4166645133466603,1.5367420058169632,0.3888733010369836,0.2169003291020216,0.8256684897822558,0.04110797690451954,0.6220028208744711,0.008008562090069853,0.006714823183590426,0.08312764456981664,0.11040778017795566,0.06043388810784363,0.12588152327221439,0.023920355524889296,0.007860697019294942,0.11865303244005641,0.0009706788200737002,2.460017315845287e-07,0.023977433004231313,0.031024133604755574,0.8838823687830198,0.026357545839210156
+0B943B_d14,mild,1.4714187424629372,0.34355867317099165,1.2198608994816789,0.311145599026441,0.1497763578274759,0.7209052808108971,0.07037312873231495,0.5652396166134185,0.023171967787308102,0.02240251409972029,0.11175718849840256,0.14024156101995694,0.08956148234446926,0.17086261980830672,0.05382059728571492,0.03767183680619617,0.09789137380191694,0.0014657705483612845,5.166260862894421e-07,0.009968051118210863,0.060394822547761635,0.779990521391213,0.04428115015974441
+7085CA_d0,mild,0.698125254384159,0.8813815232899109,0.3366451100526198,0.3850204516166701,0.5070973381009137,0.6572978335559607,0.23088547205806068,0.21660707191100517,0.00067639341852973,0.04043461224451422,0.024791418355184745,0.3013959661384512,0.332635051541218,0.5874453714739769,0.03187134441533623,0.05541076864763119,0.13198251887167262,0.004666326800660998,3.8950314740787216e-05,0.017719507350019866,0.004092135671061211,0.3405951451938351,0.021454112038140644
+7085CA_d7,mild,1.0375542203940178,0.6083067686094206,0.7689984126489163,0.3924035828053689,0.3638311438080224,0.8026624607400675,0.30153898088378017,0.521492380451918,0.02873824490534393,0.05942934672435222,0.0722017866526537,0.040492461792803025,0.0291208204270608,0.10110352075669994,0.08646440071060868,0.07829027066716643,0.2725170782974251,0.005837267613911803,2.1610879927345656e-05,0.019863373620599055,0.03580516423726489,0.5315989704177131,0.012821860220704152
+7085CA_d14,mild,1.198582833645535,0.7085702121413275,0.8704850378487754,0.5080198120379648,0.3415307478758307,0.8242689501020722,0.23195285806301957,0.472533019264743,0.01931907049351537,0.04325600128860712,0.07133843694792631,0.04820459175816106,0.030893203614750175,0.16210986792294102,0.06743771629583217,0.0618718934245108,0.24270211155043325,0.005495670677528824,9.801346789003382e-06,0.018591738874400604,0.03527400067289031,0.6320162422623233,0.032724825439555814
+2AD75E_d0,mild,0.8065176391750344,0.5447856931080512,0.525071789106474,0.35882785291805597,0.2564832098444474,0.859321649566944,0.4613708651644939,0.6034056934875861,0.013904742421531844,0.03968425422324369,0.06408423241908229,0.040152887155814436,0.038496377429500454,0.14064734173924348,0.059797750288881915,0.05016895334018109,0.15949564539191471,0.0033267118353031296,1.36199820682696e-06,0.025347718705316522,0.023496258731524517,0.4102781878443741,0.007019368256856883
+2AD75E_d7,mild,1.0411535028397119,0.6081689061332997,0.7450516880340077,0.4594749757874528,0.312077594691558,0.8549654208064102,0.36960616484307535,0.5808172206876845,0.03733458898111709,0.05819200590266737,0.14372797409277074,0.024269388629543864,0.015380698981544016,0.10277169254214687,0.039683598004388435,0.0244331399275112,0.14715687208305553,0.0020001019974130343,5.902921429542412e-07,0.013715591961139155,0.04174690158112727,0.5323874000530591,0.011810648633203162
+2AD75E_d14,mild,0.967392371882545,0.5812216680162643,0.6468540376792102,0.3650798046205291,0.2546666666666667,0.8616442384455132,0.39580143735907847,0.5811422728600643,0.029082564387721048,0.04937603662185685,0.12503651767455448,0.05335382972202097,0.04385608333317544,0.14198071866783524,0.03262089545480436,0.01697164345576158,0.12496348232544552,0.0028916193428926095,6.290644905854546e-07,0.016579024247735902,0.020406852647047804,0.4939941701656371,0.010297984224364592
+B85D75_d0,severe,0.6428901016064046,0.4729124007056617,0.4466350381361053,0.3804119662568456,0.1442613990618535,0.9537886013667284,0.5863862077304917,0.7173324010138974,0.004209256983390617,0.017758168288875765,0.031203566121842496,0.018455155181219315,0.014271244944532599,0.11441307578008915,0.016200588784947755,3.407094066864734e-06,0.06039681845992483,0.0023197465678513034,1.3175202659686788e-06,0.016519535005681322,0.005026651115862863,0.38157965442176706,0.06013460361856481
+B85D75_d7,severe,0.5185116623067438,0.5524650833338898,0.3161642509238507,0.3788618028880187,0.2491711010166557,0.9198081419265166,0.5754548922747291,0.6435756002595717,0.020321264421557947,0.04417235502894623,0.06448734587929916,0.04018732273051109,0.036347370421092866,0.13741077222582737,0.007964542418087611,2.1481692868629265e-06,0.04201817001946788,0.0040331274146538495,1.0174885886571522e-06,0.027741726151849447,0.007685601088672942,0.3440222166173563,0.08476638546398442
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/cv_pooled/summary.json

@@ -0,0 +1,157 @@
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