Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/imperial_eskd-d0-merge.log

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+{"output_sha256": "0758f1d6c54c41d7109a89fc0927612c162a4c48fe4462bfeaaf43afc0e4d738", "cells": 213000, "bulks": 142, "seed": 20260927, "seconds": 50.0}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/imperial_eskd-d0-pack.log

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+{"file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/share/imperial_eskd/lora5k4_bulkonly_imperial_eskd_draw0.h5ad", "cells": 656000, "samples": 164, "nnz": 170048565, "bytes": 387946449}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/imperial_eskd-d0-pgen.log

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+{"dataset": "imperial_eskd", "draw": 0, "cells": 213000, "samples": 142, "seconds": 24.6}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/imperial_eskd-d0-score.log

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+10:37:27 imperial_eskd: 142 scored donors, 2 arm(s); fitting the observed reference
+10:37:37 reference: R1 21250 cells, PCA var 0.257, R2 control P/C 0.9688/0.9998; contrast on
+10:37:37 observed top-50 DEG lists: T 50 (sig 1029, 102+31 donors, 230847 cells), B 50 (sig 306, 102+31 donors, 45466 cells), Mono 50 (sig 778, 101+31 donors, 68170 cells), NK 50 (sig 411, 102+31 donors, 64913 cells), DC 50 (sig 489, 102+31 donors, 11578 cells)
+10:37:37 lora5: loading generated_counts (213000 cells in the NPZ, 213000 scored)
+10:38:01 lora5: Poisson read-out nnz 54570981 (whole NPZ), median library 1163; annotating
+10:38:19 lora5: L1 0.4781 (null 0.521552501383503) P/C 0.8608/0.7570 pb r 0.8742 top1 0.042 mono 17.8% (42.2 s)
+10:38:19 lora5: top-50 DEG 116/250 (T 32, B 22, Mono 24, NK 22, DC 16); broadcast 71 (0.56 s)
+10:38:19 lora5_k4000: loading generated_counts (213000 cells in the NPZ, 213000 scored)
+10:38:43 lora5_k4000: Poisson read-out nnz 54248287 (whole NPZ), median library 1149; annotating
+10:38:56 lora5_k4000: L1 0.4542 (null 0.521552501383503) P/C 0.8558/0.7516 pb r 0.8744 top1 0.042 mono 18.1% (37.3 s)
+10:38:56 lora5_k4000: top-50 DEG 122/250 (T 33, B 23, Mono 27, NK 21, DC 18); broadcast 71 (0.37 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+lora5         0.4781                0.5216     0.8608    0.7570        0.8882       0.8848       0.8742   0.0423       17.8305       16.4524          1163.0          1356.0                     0.7799                               0.6025                           0.6675                                     0.6071         32.0         22.0            24.0          22.0          16.0          116.0          250.0                100.0                     71.0     42.2
+lora5_k4000   0.4542                0.5216     0.8558    0.7516        0.8848       0.8855       0.8744   0.0423       18.1070       16.4524          1149.0          1356.0                     0.7821                               0.6012                           0.6675                                     0.6071         33.0         23.0            27.0          21.0          18.0          122.0          250.0                104.0                     71.0     37.3
+10:38:56 done in 93.2 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/scores/imperial_eskd/draw0
+removed the K = 1,000 copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/ref_k1000/imperial_eskd/draw0/lora__raw.npz (sha in COPY.json)
+{"lora5": {"comp_l1": 0.4781, "coverage": 0.757, "pb_r_median": 0.8742, "contrast_mean_cp10k_r_gen": 0.7799, "deg_top50_sum": 116}, "lora5_k4000": {"comp_l1": 0.4542, "coverage": 0.7516, "pb_r_median": 0.8744, "contrast_mean_cp10k_r_gen": 0.7821, "deg_top50_sum": 122}}