Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw3_cibersortx/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,3267,-0.026651943329887844,0.2674058776426976,-0.14256413314838465,0.3762955708398761
+zero_filled,T cell,pseudobulk_log1p_cpm,3267,0.04097039490980576,0.2289561663328621,-0.09736119363082472,0.5299742226027215
+zero_filled,B cell,mean_cp10k,3307,0.08796091888252441,0.2947135505142224,0.06150813196030555,0.1000273394253305
+zero_filled,B cell,pseudobulk_log1p_cpm,3307,0.1341027556305896,0.29321258816714024,0.08653755558089399,0.1797907912705455
+zero_filled,Monocyte,mean_cp10k,3299,0.2893778306694032,0.5404162642066815,0.1542474334824432,0.3069075171396963
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3299,0.1786777608484515,0.6043259179152038,-0.0896919463821266,0.4038421093806307
+zero_filled,NK cell,mean_cp10k,3251,0.0620351325334476,0.2032508698563803,0.02899413118565356,0.16751391250927342
+zero_filled,NK cell,pseudobulk_log1p_cpm,3251,0.08667682169390313,0.06220697008500626,0.07229265500311172,0.27981375047212614
+covered,T cell,mean_cp10k,3041,-0.029983990117818975,0.2580413253524249,-0.24927770941566535,0.6177455289104666
+covered,T cell,pseudobulk_log1p_cpm,3041,0.044160204068337996,0.2504032299655406,-0.17580017805116116,0.6767570420239377
+covered,B cell,mean_cp10k,2074,0.17957315500326756,0.3405456691667674,0.10916160188977643,0.23431100420193524
+covered,B cell,pseudobulk_log1p_cpm,2074,0.23989865476378044,0.4399781503342566,0.1134593152983059,0.3263569084303914
+covered,Monocyte,mean_cp10k,1582,0.4259908289329535,0.6239751257827614,0.011111396165591455,0.6724047873772383
+covered,Monocyte,pseudobulk_log1p_cpm,1582,0.33318368197390374,0.6657711494605997,-0.23862985882730123,0.6932041754492133
+covered,NK cell,mean_cp10k,2016,0.09736590218365292,0.2528002778038447,0.016959354352362628,0.3237380289722245
+covered,NK cell,pseudobulk_log1p_cpm,2016,0.1481489999215595,0.2097633670899092,0.060942096335446734,0.45302457246206995

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw3_cibersortx/per_donor.csv

@@ -0,0 +1,78 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
+Abd-PS04,ped_sepsis,0.3519691653908623,0.3519691653908623,0.4726972788742577,0.4726972788742577,0.5624055790053222,0.06060027345322617,0.06060027345322617,0.14094329234721967,0.07466491445145275,0.07466491445145275,0.17030647825289044,0.5972569263715134,0.5972569263715134,0.5608368507983116,0.0814693585326361,0.0814693585326361,0.02147182969352175,0.07112410867188272,0.07112410867188272,0.003853918150119288,0.11488441851928874,0.11488441851928874,0.10258763075793724
+Abd-PS05,ped_sepsis,0.7359624847019728,0.7359624847019728,0.5736079779530875,0.5736079779530875,1.0313090699017908,0.14042113107021753,0.14042113107021753,0.30387059503177355,0.3060918465179884,0.3060918465179884,0.5060658578856152,0.12929361195326897,0.12929361195326897,0.07019064124783363,0.12932048373066327,0.12932048373066327,0.0891103408434431,0.004396594618866696,0.004396594618866696,0.008954361640670132,0.2904763321089953,0.2904763321089953,0.021808203350664357
+Abd-PS07,ped_sepsis,0.8114287953010335,0.8114287953010335,0.8172498224739865,0.8172498224739865,0.4015207373271889,0.4839559861484123,0.4839559861484123,0.8626152073732719,0.007962091814869458,0.007962091814869458,0.023329493087557603,0.019433982792503298,0.019433982792503298,0.002304147465437788,0.458401781009494,0.458401781009494,0.09331797235023041,0.02378877209736728,0.02378877209736728,0.0002880184331797235,0.006457386137353594,0.006457386137353594,0.018145161290322582
+Abd-PS19,ped_sepsis,0.38016706415696566,0.38016706415696566,0.43587791931568254,0.43587791931568254,0.5023440213760854,0.45143351938836573,0.45143351938836573,0.4622995991983968,0.08980989863086768,0.08980989863086768,0.11209919839679358,0.13678427234717352,0.13678427234717352,0.2937124248496994,0.17582921258996514,0.17582921258996514,0.05586172344689379,0.061803474307497136,0.061803474307497136,0.0156563126252505,0.08433962273613076,0.08433962273613076,0.06037074148296593
+Abd-PS20,ped_sepsis,0.42578731976162854,0.42578731976162854,0.233873181443865,0.233873181443865,0.1984620733827432,0.5178620924913001,0.5178620924913001,0.30496843261048584,0.4821379075086999,0.4821379075086999,0.5780949766675817,0.0,0.0,0.08770244304144935,0.0,0.0,0.007823222618720834,0.0,0.0,0.0005489980785067252,0.0,0.0,0.02086192698325556
+Abd-PS23,ped_sepsis,0.6159551033884462,0.6159551033884462,0.39113107281444703,0.39113107281444703,1.2967488202985995,0.3060162385635915,0.3060162385635915,0.2529589231840334,0.2500058207860575,0.2500058207860575,0.3272220932931075,0.09306856703761852,0.09306856703761852,0.32142028312833604,0.013139288145131791,0.013139288145131791,0.013460199582269667,0.0,0.0,0.002088651659317707,0.33777008546760073,0.33777008546760073,0.08284984915293572
+Abd-PS27,ped_sepsis,0.39056937069359,0.39056937069359,0.3773324068499543,0.3773324068499543,0.548883278526219,0.8033162257891995,0.8033162257891995,0.6126021003500584,0.011868213591082855,0.011868213591082855,0.06078285774901877,0.0522134134004493,0.0522134134004493,0.13196138750397793,0.0,0.0,0.010289593720165482,0.007540751909351196,0.007540751909351196,0.0029701920016972526,0.12506139530991722,0.12506139530991722,0.1813938686750822
+Abd-S102,adult_sepsis,1.2397202233124063,1.2397202233124063,1.29487131863355,1.29487131863355,0.8616467619848612,0.16701959598934302,0.16701959598934302,0.47981497056349875,0.11453781275589768,0.11453781275589768,0.39318755256518084,0.29696737179757743,0.29696737179757743,0.0053616484440706475,0.0674638925506168,0.0674638925506168,0.095878889823381,0.04253407432860409,0.04253407432860409,0.0007359125315391085,0.3114772525779611,0.3114772525779611,0.02502102607232969
+Abd-S103,adult_sepsis,0.6498915267227023,0.6498915267227023,0.569036003765816,0.569036003765816,0.86260978456967,0.25389555487180127,0.25389555487180127,0.4813753581661891,0.05057606476589247,0.05057606476589247,0.14782977820227103,0.09261118803273681,0.09261118803273681,0.0024408362517245037,0.05036573626651089,0.05036573626651089,0.04393505253104107,0.0,0.0,0.00021224663058473945,0.5525514560630587,0.5525514560630587,0.3242067282181895
+Abd-S120,adult_sepsis,0.4075326206500378,0.4075326206500378,0.4004613289832863,0.4004613289832863,0.7816113897054585,0.30766958811459943,0.30766958811459943,0.3140238630468615,0.0673858015377341,0.0673858015377341,0.11049628220646723,0.310163255927887,0.310163255927887,0.46446481065191075,0.22103449795893165,0.22103449795893165,0.07297250561992046,0.05004406862756931,0.05004406862756931,0.0008646031471554556,0.043702787833278446,0.043702787833278446,0.03717793532768459
+Abd-S123,adult_sepsis,0.5955304252563824,0.5955304252563824,0.4032355498060344,0.4032355498060344,1.485342646981002,0.08124959110060845,0.08124959110060845,0.16986823305286552,0.06228523398942868,0.06228523398942868,0.08779171297031275,0.31913812706983324,0.31913812706983324,0.5027782187648833,0.26205164150289545,0.26205164150289545,0.10938244165740593,0.037652211442753145,0.037652211442753145,0.0007937767899666614,0.23762319489448108,0.23762319489448108,0.1293856167645658
+Abd-S156,adult_sepsis,0.5033733198951427,0.5033733198951427,0.5144014290649788,0.5144014290649788,1.088669331810394,0.1938642734942555,0.1938642734942555,0.3343803540833809,0.008505981398191394,0.008505981398191394,0.08209594517418618,0.3564799212536425,0.3564799212536425,0.39406053683609366,0.13306530672465247,0.13306530672465247,0.0910908052541405,0.065938410881066,0.065938410881066,0.0012849800114220445,0.2421461062481921,0.2421461062481921,0.0970873786407767
+Abd-S39,adult_sepsis,0.7564429656352047,0.7564429656352047,0.48566789655184855,0.48566789655184855,1.5422742173541522,0.12150258831881858,0.12150258831881858,0.13819622465625728,0.043076219921248896,0.043076219921248896,0.06152412025168958,0.35128719045882656,0.35128719045882656,0.6933115823817292,0.16527624179160771,0.16527624179160771,0.049638778839431366,0.0003427212334453824,0.0003427212334453824,0.0013982754602656724,0.318515038276053,0.318515038276053,0.05593101841062689
+Abd-S42,adult_sepsis,0.6921748436812277,0.6921748436812277,0.7225952790085652,0.7225952790085652,0.1635809349779199,0.4232809805563024,0.4232809805563024,0.5748439165524593,0.0,0.0,0.09760925841327851,0.12626266438036787,0.12626266438036787,0.17039744175422566,0.3604620032400185,0.3604620032400185,0.05862646566164154,0.045926926138283905,0.045926926138283905,0.0016750418760469012,0.04406742568502739,0.04406742568502739,0.0968478757423481
+Abd-S47,adult_sepsis,0.3256965653323236,0.3256965653323236,0.21025047820828896,0.21025047820828896,0.1031228202233094,0.8597675183266184,0.8597675183266184,0.7027976414502571,0.11476542722253692,0.11476542722253692,0.20474219044034625,0.01709229458899298,0.01709229458899298,0.03224187680341237,0.0,0.0,0.019069125580228326,0.006505679657571272,0.006505679657571272,0.0006272738677706687,0.001869080204280457,0.001869080204280457,0.040521891857985194
+Abd-S51,adult_sepsis,0.4452358236157363,0.4452358236157363,0.490771283124404,0.490771283124404,0.5102908472930323,0.28841383982193686,0.28841383982193686,0.25273124544792425,0.16727936915440506,0.16727936915440506,0.269482884195193,0.23634298765148762,0.23634298765148762,0.3551347414420976,0.14157230714945876,0.14157230714945876,0.03670793882010197,0.08352761334339166,0.08352761334339166,0.0014566642388929353,0.08286388287931996,0.08286388287931996,0.08448652585579024
+Abd-S54,adult_sepsis,0.7309910712981689,0.7309910712981689,0.7328747171479646,0.7328747171479646,0.4997973906369914,0.19511644948401405,0.19511644948401405,0.4854182655410591,0.0612861985455917,0.0612861985455917,0.1364799181376311,0.11329607100652819,0.11329607100652819,0.012918905090816066,0.5236435733847976,0.5236435733847976,0.340752110514198,0.050823897008204416,0.050823897008204416,0.0011511895625479663,0.05583381057086399,0.05583381057086399,0.023279611153747763
+Abd-S66,adult_sepsis,0.9595918883611708,0.9595918883611708,0.9993065603415541,0.9993065603415541,0.6558174343485191,0.16754683211970237,0.16754683211970237,0.49295242889504154,0.08441640575191743,0.08441640575191743,0.23873647118046817,0.3271390673716938,0.3271390673716938,0.03788069468915178,0.36566578599980076,0.36566578599980076,0.18688648376541656,0.012135817715710566,0.012135817715710566,0.0003775484520513466,0.04309609104117513,0.04309609104117513,0.04316637301787063
+Abd-S79,adult_sepsis,0.6778187565405777,0.6778187565405777,0.9083620772322119,0.9083620772322119,0.5455196419691696,0.44463774024611574,0.44463774024611574,0.5500994530084535,0.08369090123518753,0.08369090123518753,0.30892590750870214,0.3314791659193284,0.3314791659193284,0.024365987071108902,0.09714947426539107,0.09714947426539107,0.09373446046742914,0.028505501884674246,0.028505501884674246,0.00012431626056688214,0.01453721644930309,0.01453721644930309,0.022749875683739432
+Abd-S83,adult_sepsis,1.4376907185942307,1.4376907185942307,1.5045289142183358,1.5045289142183358,1.1237444569710635,0.0,0.0,0.3924947656627476,0.009484088344695317,0.009484088344695317,0.16991464003865356,0.30294004937456076,0.30294004937456076,0.049927524561120956,0.13541672726558168,0.13541672726558168,0.3013367692059913,0.06078966049846101,0.06078966049846101,0.0009663391850539539,0.4913694745167012,0.4913694745167012,0.0853599613464326
+Abd-S98,adult_sepsis,1.382990608377977,1.382990608377977,1.4555066180609875,1.4555066180609875,0.2839201596806387,0.1608506940874442,0.1608506940874442,0.7477045908183633,0.004939430865283853,0.004939430865283853,0.10958083832335329,0.3510918008656763,0.3510918008656763,0.019560878243512974,0.2947476215174257,0.2947476215174257,0.11037924151696607,0.06863693634090347,0.06863693634090347,0.0015968063872255488,0.11973351632326641,0.11973351632326641,0.011177644710578843
+HC01,adult_HC,0.527886941084301,0.527886941084301,0.7900320189143382,0.7900320189143382,0.117732428978669,0.5974222450591308,0.5974222450591308,0.5901897178806645,0.03622103400686004,0.03622103400686004,0.09938071365378945,0.013051490607195213,0.013051490607195213,0.1862774009633343,0.2063249712998558,0.2063249712998558,0.06772830040302762,0.146522804856515,0.146522804856515,0.028408532389658903,0.0004574541704433345,0.0004574541704433345,0.028015334709525212
+HC05,adult_HC,0.6665253879046482,0.6665253879046482,0.6910095100991974,0.6910095100991974,0.1023927765237021,0.4970238498233619,0.4970238498233619,0.6924604966139954,0.053505781280747435,0.053505781280747435,0.09498871331828443,0.0,0.0,0.08099322799097065,0.4054323949474059,0.4054323949474059,0.10455981941309254,0.044037973948484806,0.044037973948484806,0.01164785553047404,0.0,0.0,0.015349887133182845
+HC07,adult_HC,0.7877815092943281,0.7877815092943281,0.8503110640671505,0.8503110640671505,0.4156635412420166,0.23740567368662838,0.23740567368662838,0.3848348960456584,0.00014500664466961878,0.00014500664466961878,0.03770892784345699,0.040930708417023495,0.040930708417023495,0.21962902568283735,0.5984721639837626,0.5984721639837626,0.3080921320831635,0.12277285075308758,0.12277285075308758,0.019262128006522626,0.0002735965148284235,0.0002735965148284235,0.03047289033836119
+HC09,adult_HC,0.5940037114317488,0.5940037114317488,0.6952731042802547,0.6952731042802547,0.0955875180822484,0.5378406438024892,0.5378406438024892,0.6319487497416821,0.020250189766623992,0.020250189766623992,0.06013639181649101,0.01884820759453287,0.01884820759453287,0.1529241578838603,0.35128428025527736,0.35128428025527736,0.11365984707584212,0.07177667858107643,0.07177667858107643,0.012399256044637322,0.0,0.0,0.028931597437487085
+HC12,adult_HC,0.5648081591353817,0.5648081591353817,0.6606429002775009,0.6606429002775009,0.2195698924731184,0.47328619013075185,0.47328619013075185,0.5456989247311828,0.00887374442051692,0.00887374442051692,0.05725806451612903,0.006708116496658808,0.006708116496658808,0.14623655913978495,0.4331502732445162,0.4331502732445162,0.2196236559139785,0.07774842997908879,0.07774842997908879,0.008870967741935484,0.00023324572846766275,0.00023324572846766275,0.022311827956989248
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw3_cibersortx/summary.json

@@ -0,0 +1,157 @@
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw3_full/contrast.csv

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