Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/imperial_eskd/fewshot_draw4_cibersortx/summary.json

@@ -0,0 +1,157 @@
+{
+ "dataset": "imperial_eskd",
+ "comparison": "fewshot",
+ "draw": 4,
+ "gene_mode": "cibersortx",
+ "stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/fewshot_n5/draw4",
+ "lora_arm": "lora5",
+ "n_donors": 143,
+ "contrast": true,
+ "genes_scoring": 5927,
+ "genes_covered_by_Z_all_donors": 5716,
+ "bayesprism": {
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+  "comp_l1_by_variant": {
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+    "Monocyte": 0.3883,
+    "NK cell": 0.1432,
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+   },
+   "final_mrna": {
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+    "NK cell": 0.1043,
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+   },
+   "first_mrna": {
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+    "B cell": 0.074,
+    "Monocyte": 0.4066,
+    "NK cell": 0.1043,
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+    "Other": 0.0411
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+  "partial_r_mean_cp10k": 0.06932961604601938,
+  "logfc_r_mean_cp10k_covered_genes": 0.3762981477946839,
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+  "deg_top50_sum_covered_genes": 38,
+  "per_type_logfc_r": {
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+   "B cell": 0.1295,
+   "Monocyte": 0.6495,
+   "NK cell": 0.1552
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+ },
+ "observed_mean_fraction": {
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+  "B cell": 0.1233,
+  "Monocyte": 0.1757,
+  "NK cell": 0.1631,
+  "DC": 0.0311,
+  "Other": 0.0152
+ },
+ "lora": {
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+  "deg_top50_sum": 113,
+  "partial_r_mean_cp10k": 0.575230848198632
+ },
+ "broadcast": {
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+  "logfc_r_mean_cp10k_covered_genes": 0.5982397217635673,
+  "deg_top50_sum": 76
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+ "other_arms": {
+  "zs_raw": {
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+   "logfc_r_mean_cp10k": 0.6360357252245608,
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+  "zs_pseudo": {
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+ "gates": {
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+  "broadcast_r_equal": true,
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+ "method": "cibersortx",
+ "has_cell_type_expression": true,
+ "n_case": 104,
+ "n_control": 31,
+ "deg_per_type": {
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+    "NK cell": 18,
+    "DC": 3
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+  }
+ },
+ "hires_imputed_genes": {
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+  "fewshot4|B cell": 2731,
+  "fewshot4|Monocyte": 3275,
+  "fewshot4|NK cell": 2279,
+  "fewshot4|DC": 2300,
+  "fewshot4|Other": 586
+ },
+ "tool_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
+ "score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+ "seconds": 2.3
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/imperial_eskd/fewshot_draw4_full/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
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+zero_filled,T cell,pseudobulk_log1p_cpm,3032,0.36283792858447284,0.6213005296240948,0.024343601184641343,0.558530908211453
+zero_filled,B cell,mean_cp10k,3180,0.5331811534151726,0.6315018114438883,0.12073210019840751,0.7455061537927855
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+zero_filled,Monocyte,mean_cp10k,2878,0.724294030195066,0.7121111596726496,0.28172350962838943,0.8910193316083982
+zero_filled,Monocyte,pseudobulk_log1p_cpm,2878,0.7195468707397943,0.7117946294640722,0.2455898788042423,0.9108856326273973
+zero_filled,NK cell,mean_cp10k,2963,0.68252975112406,0.6592751152623284,0.287910149065046,0.8782507039633596
+zero_filled,NK cell,pseudobulk_log1p_cpm,2963,0.5896726242735609,0.5939124968903833,0.1537821713496574,0.9036404646913033
+covered,T cell,mean_cp10k,2845,0.5974764238463087,0.5872779412606964,0.21410158573905058,0.873960338073138
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+covered,B cell,mean_cp10k,2991,0.5441660210620561,0.6081854876623128,0.14241385209812035,0.7779446217961227
+covered,B cell,pseudobulk_log1p_cpm,2991,0.44734595455940396,0.48775033583435773,0.048886913083072546,0.8747644716423846
+covered,Monocyte,mean_cp10k,2705,0.7415692223633567,0.7026340628600335,0.3424044079892318,0.9174913838863457
+covered,Monocyte,pseudobulk_log1p_cpm,2705,0.7332451291385053,0.712027616723319,0.274507089568466,0.9309618788663381
+covered,NK cell,mean_cp10k,2781,0.6994441975255112,0.6382487159511515,0.3721174420829415,0.9037966348853566
+covered,NK cell,pseudobulk_log1p_cpm,2781,0.60552794403426,0.5909826859784537,0.1941789400695454,0.9219635965586289

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/imperial_eskd/fewshot_draw4_full/per_donor.csv

@@ -0,0 +1,144 @@
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/imperial_eskd/fewshot_draw4_full/summary.json

@@ -0,0 +1,147 @@
+{
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+}