Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw0/limma/versions.txt +3 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw0/manifest.json +625 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw0/rbo.csv +51 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw0/repro.json +53 -0
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw0/limma/versions.txt
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R version 4.5.2 (2025-10-31)
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limma 3.66.0
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edgeR 4.8.1
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paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw0/manifest.json
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| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "imperial_eskd",
|
| 4 |
+
"design": "fewshot",
|
| 5 |
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"unit": "fewshot_n5/draw0",
|
| 6 |
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"written_utc": "2026-10-02T06:32:45.055049+00:00",
|
| 7 |
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"command": [
|
| 8 |
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"tools/contrast_extra.py",
|
| 9 |
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"--design",
|
| 10 |
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"fewshot",
|
| 11 |
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"--dataset",
|
| 12 |
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"imperial_eskd",
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| 13 |
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"--draws",
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| 14 |
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"0,1,2,3,4",
|
| 15 |
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"--threads",
|
| 16 |
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"4"
|
| 17 |
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],
|
| 18 |
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"threads": 4,
|
| 19 |
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"donors": [
|
| 20 |
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"C20_1004",
|
| 21 |
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"C20_1404",
|
| 22 |
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"C21_1004",
|
| 23 |
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"C21_1704",
|
| 24 |
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"C21_2504",
|
| 25 |
+
"C23_2204",
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| 26 |
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"C31_1304",
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| 27 |
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"C31_2004",
|
| 28 |
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"C31_2704",
|
| 29 |
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"C33_1401",
|
| 30 |
+
"C33_1601",
|
| 31 |
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"C33_1901",
|
| 32 |
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"C34_1404",
|
| 33 |
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"C34_2104",
|
| 34 |
+
"C34_2504",
|
| 35 |
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"C36_1504",
|
| 36 |
+
"C36_1704",
|
| 37 |
+
"C36_2104",
|
| 38 |
+
"C40_1504",
|
| 39 |
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"C40_2204",
|
| 40 |
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"C40_0105",
|
| 41 |
+
"C42_1504",
|
| 42 |
+
"C42_2204",
|
| 43 |
+
"C42_2704",
|
| 44 |
+
"C60_2504",
|
| 45 |
+
"C63_1704",
|
| 46 |
+
"C63_2404",
|
| 47 |
+
"C63_2904",
|
| 48 |
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"C65_1704",
|
| 49 |
+
"C65_2104",
|
| 50 |
+
"C65_2504",
|
| 51 |
+
"C69_1804",
|
| 52 |
+
"C82_2504",
|
| 53 |
+
"C85_2004",
|
| 54 |
+
"C93_2104",
|
| 55 |
+
"C93_2704",
|
| 56 |
+
"C93_0405",
|
| 57 |
+
"C101_0601",
|
| 58 |
+
"C101_1101",
|
| 59 |
+
"C101_1301",
|
| 60 |
+
"C101_1801",
|
| 61 |
+
"C101_2001",
|
| 62 |
+
"C101_2502",
|
| 63 |
+
"C103_2204",
|
| 64 |
+
"C104_2204",
|
| 65 |
+
"C108_2204",
|
| 66 |
+
"C108_1501",
|
| 67 |
+
"C108_1801",
|
| 68 |
+
"C108_2201",
|
| 69 |
+
"C113_0605",
|
| 70 |
+
"C123_2404",
|
| 71 |
+
"C123_2904",
|
| 72 |
+
"C123_0505",
|
| 73 |
+
"C124_2404",
|
| 74 |
+
"C124_2704",
|
| 75 |
+
"C124_0105",
|
| 76 |
+
"C127_2504",
|
| 77 |
+
"C127_0405",
|
| 78 |
+
"C127_1105",
|
| 79 |
+
"C128_2504",
|
| 80 |
+
"C128_0405",
|
| 81 |
+
"C128_1105",
|
| 82 |
+
"C132_2804",
|
| 83 |
+
"C132_0205",
|
| 84 |
+
"C132_1105",
|
| 85 |
+
"C137_3004",
|
| 86 |
+
"C137_2502",
|
| 87 |
+
"C138_3004",
|
| 88 |
+
"C138_2301",
|
| 89 |
+
"C138_3001",
|
| 90 |
+
"C138_0202",
|
| 91 |
+
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paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw0/rbo.csv
ADDED
|
@@ -0,0 +1,51 @@
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| 1 |
+
dataset,design,unit,arm,predictor,celltype,p,rbo_ext_t_desc,rbo_ext_t_asc,rbo_ext_mean_up_down,pred_defined,len_obs,len_pred
|
| 2 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_raw,generated:zs_raw,T cell,0.98,0.24667710104870552,0.2246336779468071,0.23565538949775633,True,5744,4903
|
| 3 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,T cell,0.98,0.1524902095644895,0.19688394882458496,0.17468707919453724,True,5744,5821
|
| 4 |
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imperial_eskd,fewshot,fewshot_n5/draw0,zs_raw,generated:zs_raw,B cell,0.98,0.38262610673531583,0.10764689056227421,0.24513649864879503,True,5637,4287
|
| 5 |
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imperial_eskd,fewshot,fewshot_n5/draw0,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,B cell,0.98,0.13291019878284174,0.13592591364741025,0.13441805621512598,True,5637,5821
|
| 6 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_raw,generated:zs_raw,Monocyte,0.98,0.17675551423884286,0.13539135620574133,0.1560734352222921,True,5602,4973
|
| 7 |
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imperial_eskd,fewshot,fewshot_n5/draw0,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,Monocyte,0.98,0.1592086223413804,0.07280702279407002,0.11600782256772521,True,5602,5821
|
| 8 |
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|
| 9 |
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imperial_eskd,fewshot,fewshot_n5/draw0,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,NK cell,0.98,0.15616267714818086,0.18573698355289173,0.1709498303505363,True,5572,5821
|
| 10 |
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imperial_eskd,fewshot,fewshot_n5/draw0,zs_raw,generated:zs_raw,DC,0.98,0.040464391849213216,0.25247041578085655,0.14646740381503487,True,5407,3995
|
| 11 |
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imperial_eskd,fewshot,fewshot_n5/draw0,zs_raw,broadcast:all_usable_raw.npz@f0a2b659,DC,0.98,0.12671114979626796,0.183665307568173,0.15518822868222049,True,5407,5821
|
| 12 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,generated:zs_pseudo,T cell,0.98,0.2781380299037023,0.167928646065445,0.22303333798457364,True,5744,4766
|
| 13 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,T cell,0.98,0.5283356959857103,0.3773871223217641,0.4528614091537372,True,5744,5846
|
| 14 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,generated:zs_pseudo,B cell,0.98,0.27895937955118305,0.22919368211128746,0.25407653083123527,True,5637,4021
|
| 15 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,B cell,0.98,0.465741915965994,0.17804468588429928,0.3218933009251467,True,5637,5846
|
| 16 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,generated:zs_pseudo,Monocyte,0.98,0.27138206418733385,0.19719722224468691,0.23428964321601037,True,5602,4283
|
| 17 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,Monocyte,0.98,0.36478939282268624,0.18523132694785568,0.27501035988527095,True,5602,5846
|
| 18 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,generated:zs_pseudo,NK cell,0.98,0.32983470547623395,0.28643887472707363,0.3081367901016538,True,5572,4151
|
| 19 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,NK cell,0.98,0.46438727714327255,0.37135940354101593,0.41787334034214424,True,5572,5846
|
| 20 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,generated:zs_pseudo,DC,0.98,0.10127157007232312,0.20173517773824345,0.1515033739052833,True,5407,3608
|
| 21 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_pseudo,broadcast:all_usable_pseudo.npz@df955ec1,DC,0.98,0.387132808260224,0.22402922961811833,0.30558101893917117,True,5407,5846
|
| 22 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,generated:zs_cal,T cell,0.98,0.1433360306822072,0.07390201057845884,0.10861902063033302,True,5744,4760
|
| 23 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,broadcast:test_cal.npz@eacdb3b9,T cell,0.98,0.21576311230367518,0.1644934579453212,0.1901282851244982,True,5744,5821
|
| 24 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,generated:zs_cal,B cell,0.98,0.3176504723301643,0.15629043429601136,0.23697045331308783,True,5637,3969
|
| 25 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,broadcast:test_cal.npz@eacdb3b9,B cell,0.98,0.16284177587371457,0.09616277973144714,0.12950227780258086,True,5637,5821
|
| 26 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,generated:zs_cal,Monocyte,0.98,0.2189643969905438,0.10290847095703322,0.1609364339737885,True,5602,4503
|
| 27 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,broadcast:test_cal.npz@eacdb3b9,Monocyte,0.98,0.17484446250245045,0.12094013510047251,0.14789229880146149,True,5602,5821
|
| 28 |
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imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,generated:zs_cal,NK cell,0.98,0.26542751046006097,0.17519475137396412,0.22031113091701254,True,5572,4115
|
| 29 |
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imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,broadcast:test_cal.npz@eacdb3b9,NK cell,0.98,0.19158208651417008,0.16808006126982714,0.1798310738919986,True,5572,5821
|
| 30 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,generated:zs_cal,DC,0.98,0.18932983907849396,0.17763131246861766,0.1834805757735558,True,5407,3709
|
| 31 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,zs_cal,broadcast:test_cal.npz@eacdb3b9,DC,0.98,0.15459136708876223,0.15902704444749852,0.15680920576813037,True,5407,5821
|
| 32 |
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imperial_eskd,fewshot,fewshot_n5/draw0,lora5,generated:lora5,T cell,0.98,0.1875819175287062,0.21501348557893568,0.20129770155382093,True,5744,4642
|
| 33 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,lora5,broadcast:test_raw.npz@73567205,T cell,0.98,0.1524902095644895,0.19688394882458496,0.17468707919453724,True,5744,5821
|
| 34 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,lora5,generated:lora5,B cell,0.98,0.3344537739138907,0.16944081532184535,0.251947294617868,True,5637,3934
|
| 35 |
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imperial_eskd,fewshot,fewshot_n5/draw0,lora5,broadcast:test_raw.npz@73567205,B cell,0.98,0.13291019878284174,0.13592591364741025,0.13441805621512598,True,5637,5821
|
| 36 |
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imperial_eskd,fewshot,fewshot_n5/draw0,lora5,generated:lora5,Monocyte,0.98,0.2644431159156649,0.20682531294563375,0.2356342144306493,True,5602,4034
|
| 37 |
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imperial_eskd,fewshot,fewshot_n5/draw0,lora5,broadcast:test_raw.npz@73567205,Monocyte,0.98,0.1592086223413804,0.07280702279407002,0.11600782256772521,True,5602,5821
|
| 38 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,lora5,generated:lora5,NK cell,0.98,0.30043558382086655,0.26360685841344217,0.28202122111715433,True,5572,4124
|
| 39 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,lora5,broadcast:test_raw.npz@73567205,NK cell,0.98,0.15616267714818086,0.18573698355289173,0.1709498303505363,True,5572,5821
|
| 40 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,lora5,generated:lora5,DC,0.98,0.0934725817843245,0.34476754051020386,0.21912006114726418,True,5407,3799
|
| 41 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,lora5,broadcast:test_raw.npz@73567205,DC,0.98,0.12671114979626796,0.183665307568173,0.15518822868222049,True,5407,5821
|
| 42 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,T cell,0.98,0.007216595172361618,0.1361654849522098,0.0716910400622857,True,5744,3681
|
| 43 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@73567205,T cell,0.98,0.1524902095644895,0.19688394882458496,0.17468707919453724,True,5744,5821
|
| 44 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,B cell,0.98,0.22774763367951986,0.03768317751087288,0.13271540559519637,True,5637,1802
|
| 45 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@73567205,B cell,0.98,0.13291019878284174,0.13592591364741025,0.13441805621512598,True,5637,5821
|
| 46 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,Monocyte,0.98,0.20822152106296418,0.07334771689074303,0.1407846189768536,True,5602,2288
|
| 47 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@73567205,Monocyte,0.98,0.1592086223413804,0.07280702279407002,0.11600782256772521,True,5602,5821
|
| 48 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,NK cell,0.98,0.19766238615306975,0.0429579053318094,0.12031014574243958,True,5572,2858
|
| 49 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@73567205,NK cell,0.98,0.15616267714818086,0.18573698355289173,0.1709498303505363,True,5572,5821
|
| 50 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,generated:scsemi5,DC,0.98,0.05823956382331293,0.2656453144691262,0.16194243914621956,True,5407,1488
|
| 51 |
+
imperial_eskd,fewshot,fewshot_n5/draw0,scsemi5,broadcast:test_raw.npz@73567205,DC,0.98,0.12671114979626796,0.183665307568173,0.15518822868222049,True,5407,5821
|
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/imperial_eskd/fewshot_n5/draw0/repro.json
ADDED
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| 1 |
+
{
|
| 2 |
+
"arms": {
|
| 3 |
+
"zs_raw": {
|
| 4 |
+
"contrast_max_abs_diff": 8.326672684688674e-17,
|
| 5 |
+
"contrast_all_equal": true,
|
| 6 |
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"n_genes_equal": true,
|
| 7 |
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"welch_lists_equal": true,
|
| 8 |
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"welch_counts_equal": true,
|
| 9 |
+
"pass": true
|
| 10 |
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},
|
| 11 |
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"zs_pseudo": {
|
| 12 |
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"contrast_max_abs_diff": 8.326672684688674e-17,
|
| 13 |
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"contrast_all_equal": true,
|
| 14 |
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"n_genes_equal": true,
|
| 15 |
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"welch_lists_equal": true,
|
| 16 |
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"welch_counts_equal": true,
|
| 17 |
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"pass": true
|
| 18 |
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},
|
| 19 |
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"zs_cal": {
|
| 20 |
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"contrast_max_abs_diff": 5.551115123125783e-17,
|
| 21 |
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"contrast_all_equal": true,
|
| 22 |
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"n_genes_equal": true,
|
| 23 |
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"welch_lists_equal": true,
|
| 24 |
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"welch_counts_equal": true,
|
| 25 |
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"pass": true
|
| 26 |
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},
|
| 27 |
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"lora5": {
|
| 28 |
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"contrast_max_abs_diff": 5.551115123125783e-17,
|
| 29 |
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"contrast_all_equal": true,
|
| 30 |
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"n_genes_equal": true,
|
| 31 |
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"welch_lists_equal": true,
|
| 32 |
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"welch_counts_equal": true,
|
| 33 |
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"pass": true
|
| 34 |
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},
|
| 35 |
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"scsemi5": {
|
| 36 |
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"contrast_max_abs_diff": 9.71445146547012e-17,
|
| 37 |
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"contrast_all_equal": true,
|
| 38 |
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"n_genes_equal": true,
|
| 39 |
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"welch_lists_equal": true,
|
| 40 |
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"welch_counts_equal": true,
|
| 41 |
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"pass": true
|
| 42 |
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}
|
| 43 |
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},
|
| 44 |
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"observed_split_half_full_aggregates": {
|
| 45 |
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"n_equal": true,
|
| 46 |
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"det_equal": true,
|
| 47 |
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"sum_equal_float32": true,
|
| 48 |
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"cp10k_max_abs_diff_float32": 0.0,
|
| 49 |
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"cp10k_equal_float32": true
|
| 50 |
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},
|
| 51 |
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"comparable_with_scorer": true,
|
| 52 |
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"all_pass": true
|
| 53 |
+
}
|